Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042054.1

Orthogroup ID

OG0005134

Physical Location & Seq

Genomic Coordinates Forward (+)

879 .. 1325

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgtggtcaagtttagctgtcgatgttcttttgggaaacttgattggtttggcactgttgtatcatgcagaatctgtttgcatattggttctcaaattttccagtgacgttaccaatgagttgttgcgctctggttgtgtgtggttgatgggagtccctgcaggtttcaagttaaacacggaattagcaggagttcttgggatgatttctctaactgctatccagatttggtctaccatttggatctttttgggttttcacttcctttatgtcattagaggacttgccatatccgggatcatttttgggttgactatacctgctgctttgatcatagacttgattgcactagtaacattacatgtgtctactcttcattggttgatatctcttttgtattcaactcagatacaggcattagcagctttgtggcgccttttcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0019538 GO:0019637 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0071704 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Gpi1

Protein Analysis

148

Amino Acids

16.27

Weight (kDa)

6.89

Isoelectric Point (pI)

18.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57170 AT3G57170
fragaria_vesca	FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900 FvH4_6g24900
malus_domestica	MD07G1151600.v1.1 MD12G1089200.v1.1 MD14G1081800.v1.1
prunus_persica	Prupe.4G274500_v2.0.a1 Prupe.5G000500_v2.0.a1
pyrus_communis	pycom07g15000 pycom12g07440 pycom14g07110
rosa_chinensis	RchiOBHm_Chr2g0124601
rosa_laevigata	RLG00000018807
rosa_multiflora	Rmu_sc0042054.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119850
rosa_rugosa	Rorug02G0251500 Rorug02G0251500
rosa_samantha	Rh2AG310200 Rh2BG318700 Rh2CG297100 Rh2CG302000 Rh2DG333900
rosa_wichuraiana	Rw2G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	152, 328
AccB1I	GGYRCC	1 cut(s)	432
AccI	GTMKAC	2 cut(s)	233, 368
AclWI	GGATC	2 cut(s)	251, 305
AcsI	RAATTY	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	169, 402
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	2 cut(s)	17, 425
AluI	AGCT	2 cut(s)	17, 425
AlwI	GGATC	2 cut(s)	251, 305
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	323, 422
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	129, 435
AsuC2I	CCSGG	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BanI	GGYRCC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	310, 434
BccI	CCATC	1 cut(s)	142
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	436
BfuAI	ACCTGC	2 cut(s)	152, 328
BisI	GCNGC	2 cut(s)	324, 423
BlsI	GCNGC	2 cut(s)	325, 424
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	310, 434
BshNI	GGYRCC	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	243, 297, 330
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	434
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	152, 328
BspPI	GGATC	2 cut(s)	251, 305
BspT107I	GGYRCC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	243, 297, 330
BssNI	GRCGYC	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	433
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	2 cut(s)	129, 435
BstKTI	GATC	3 cut(s)	246, 300, 333
BstMBI	GATC	3 cut(s)	243, 297, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	310, 434
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	53, 109
BveI	ACCTGC	2 cut(s)	152, 328
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	129, 435
CviAII	CATG	2 cut(s)	65, 362
CviJI	RGCY	2 cut(s)	17, 425
CviKI_1	RGCY	2 cut(s)	17, 425
DdeI	CTNAG	1 cut(s)	405
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	3 cut(s)	245, 299, 332
DpnII	GATC	3 cut(s)	243, 297, 330
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	387
EcoRV	GATATC	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
FaeI	CATG	2 cut(s)	68, 365
FaiI	YATR	7 cut(s)	66, 83, 270, 290, 317, 335, 363
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	64, 361
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	2 cut(s)	233, 368
Fnu4HI	GCNGC	2 cut(s)	324, 423
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	2 cut(s)	324, 423
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	2 cut(s)	128, 434
GluI	GCNGC	2 cut(s)	324, 423
HaeII	RGCGCY	1 cut(s)	436
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	2 cut(s)	129, 435
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	2 cut(s)	68, 365
Hin6I	GCGC	2 cut(s)	127, 433
HinP1I	GCGC	2 cut(s)	127, 433
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	2 cut(s)	71, 153
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	3 cut(s)	234, 312, 369
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	234, 312, 369
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	4 cut(s)	68, 81, 161, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	68, 365
HspAI	GCGC	2 cut(s)	127, 433
KasI	GGCGCC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	243, 297, 330
Lsp1109I	GCAGC	2 cut(s)	310, 434
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	3 cut(s)	104, 109, 352
MalI	GATC	3 cut(s)	245, 299, 332
MboI	GATC	3 cut(s)	243, 297, 330
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	2 cut(s)	95, 182
Mly113I	GGCGCC	1 cut(s)	433
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	422
NarI	GGCGCC	1 cut(s)	433
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	3 cut(s)	243, 297, 330
NlaIII	CATG	2 cut(s)	68, 365
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	365
PciI	ACATGT	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	325, 424
PleI	GAGTC	1 cut(s)	161
PluTI	GGCGCC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	161
PscI	ACATGT	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	324, 423
Sau3AI	GATC	3 cut(s)	243, 297, 330
SbfI	CCTGCAGG	1 cut(s)	163
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	295
SdaI	CCTGCAGG	1 cut(s)	163
SetI	ASST	6 cut(s)	19, 111, 166, 322, 427, 446
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	349
Sse8387I	CCTGCAGG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	95, 182
SspDI	GGCGCC	1 cut(s)	432
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	95, 182
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	60, 109
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	323, 422
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	60, 109
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	233, 368
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.