Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008439

Physical Location & Seq

Genomic Coordinates Forward (+)

21218751 .. 21220485

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGATGGAAACAAAGACGATGCGTTGAAGTGCTTGAAAATCTGCAAAAGTGCTATGGAAGCTGGAGATCGACCTCGCGCTTTGAAATTCCTGGCTAAAGCTCGTCGTCTTGATCCAAATCTCCCGATCGATGATCTCGTATCTGAGCTTAACAACAACAAATCAGACGAACCAGGATCTGCAAAATCGCCTGGATCTGCAGCAGCAAAGGATTCTTCCAATTCTTCAGATCGGCCTTCTTTACGTCAACGTGGATCGTCAACAACGTCATCGTCTTCTTCGATGTCCTACACTGAAGAACAGATCTCAATCGTGAGAAAGATAAAATCTAAAAAGGATTATTACGAGATCTTAGGTCTTGAATCCAACTGTTCAGTGGATGATGTGAGAAAAGCTTACCGGAAACTCTCATTGAAAGTTCATCCAGATAAGAATCAAGCTCCTGGTTCAGAAGAAGCTTTCAAATCCGTCTCCAAGGCATTTCAATGCTTGAGCAATGACGAAGCTAGGAAAAAATACGATGTAAGTGGCTCCGATGAACCAATCTATCAACCACGTCGATCTGCTAGAAGTAATGGATTCAATGGTGGATACTATTACGAAGACGAATTCGATCCCAACGAGATTTTCCGAAGCTTCTTCGGTGGAGGAGGATTCGGTGGTGGAGGAATGCCTCCTGCGACTGCTCAATTCCGATCATTTAATTTCGGAGCTACTCGTCAGAGAACAGCTAATAACAATCAAGCACCTGATGCAGGTTTCAATGCTCGTATACTTCTCCAGCTTCTTCCTGTTGTCTTCATACTTCTGCTCAACTTCATGCCTTCTTCTCAACCAGTTTACCAACTCTCTGCAACTTATCCTTACCAGTACAAGTTCACTACACAGAAAGGTGTCAATTACTTTGTGAAATCGTCTAAATTCGAGCAGGATTATCCACGAGATAGCAACGATCGACACACGCTGGAAGAACAAGTTGAGAGAGATTATGTGTCTATACTTAGTCAGAATTGTAGGTATGAGATGCAGAGGAAACAATGGGGATTTGTTCGTGAAACGCCTCATTGTGACATGATGAGGAGATTTGATACAGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

367

Amino Acids

41.32

Weight (kDa)

8.92

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	113 - 174	4e-23	DnaJ domain
DUF1977	PF09320	275 - 346	1.6e-10	Domain of unknown function (DUF1977)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57340 AT3G57340
fragaria_vesca	FvH4_1g03490 FvH4_1g03490
malus_domestica	MD02G1033900.v1.1 MD15G1174700.v1.1
prunus_persica	Prupe.7G241200_v2.0.a1 Prupe.7G241200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088701
rosa_laevigata	RLG00000015977
rosa_multiflora	Rmu_co7978266.1_g000001 Rmu_sc0006835.1_g000007 Rmu_sc0015442.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152390
rosa_rugosa	Rorug01G0486000.1 Rorug01G0486100 Rorug01G0486200
rosa_samantha	Rh2AG041500 Rh2BG040200 Rh2CG041100 Rh2DG040600 Rh5CG346200
rosa_wichuraiana	Rw2G003290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	772
AccII	CGCG	1 cut(s)	78
AclWI	GGATC	5 cut(s)	107, 184, 202, 262, 608
AcsI	RAATTY	3 cut(s)	86, 608, 920
AcuI	CTGAAG	2 cut(s)	210, 315
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	1 cut(s)	755
AgsI	TTSAA	9 cut(s)	28, 37, 85, 362, 415, 463, 485, 583, 763
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	4 cut(s)	90, 172, 190, 442
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	5 cut(s)	107, 184, 202, 262, 608
AlwNI	CAGNNNCTG	2 cut(s)	179, 1097
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	200, 203, 1094, 1097
ApoI	RAATTY	3 cut(s)	86, 608, 920
AspLEI	GCGC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	939
BbsI	GAAGAC	3 cut(s)	267, 609, 790
BbvI	GCAGC	4 cut(s)	212, 215, 1081, 1084
BciT130I	CCWGG	4 cut(s)	92, 174, 192, 444
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	507, 567
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	584
BglII	AGATCT	2 cut(s)	303, 348
BisI	GCNGC	4 cut(s)	201, 204, 1095, 1098
BlsI	GCNGC	4 cut(s)	202, 205, 1096, 1099
Bme1390I	CCNGG	4 cut(s)	92, 174, 192, 444
BmgBI	CACGTC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	4 cut(s)	92, 174, 192, 444
BmsI	GCATC	3 cut(s)	10, 742, 1014
BpiI	GAAGAC	3 cut(s)	267, 609, 790
BpmI	CTGGAG	2 cut(s)	84, 764
BpuEI	CTTGAG	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	3 cut(s)	117, 308, 432
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	836, 868
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	3 cut(s)	117, 308, 432
BseBI	CCWGG	4 cut(s)	92, 174, 192, 444
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	3 cut(s)	10, 385, 421
BseJI	GATNNNNATC	3 cut(s)	117, 308, 432
BseLI	CCNNNNNNNGG	1 cut(s)	755
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	836, 868
BseRI	GAGGAG	2 cut(s)	663, 1093
BseXI	GCAGC	4 cut(s)	212, 215, 1081, 1084
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	129, 955
BshFI	GGCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	2 cut(s)	129, 955
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	755
BsmAI	GTCTC	1 cut(s)	475
BsmBI	CGTCTC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	532
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	5 cut(s)	107, 184, 202, 262, 608
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	836, 868
BssECI	CCNNGG	1 cut(s)	474
BssNAI	GTATAC	1 cut(s)	773
BssSI	CACGAG	1 cut(s)	939
BssT1I	CCWWGG	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	773
Bst2BI	CACGAG	1 cut(s)	939
Bst2UI	CCWGG	4 cut(s)	92, 174, 192, 444
Bst4CI	ACNGT	1 cut(s)	371
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstDEI	CTNAG	3 cut(s)	144, 352, 1001
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	10, 385, 421
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	475
BstMCI	CGRYCG	2 cut(s)	129, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 752
BstNI	CCWGG	4 cut(s)	92, 174, 192, 444
BstSCI	CCNGG	4 cut(s)	90, 172, 190, 442
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	212, 215, 1081, 1084
BstV2I	GAAGAC	3 cut(s)	267, 609, 790
BstX2I	RGATCY	4 cut(s)	176, 194, 303, 348
BstYI	RGATCY	4 cut(s)	176, 194, 303, 348
BstZ17I	GTATAC	1 cut(s)	773
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	10, 385, 421
BtsIMutI	CAGTG	2 cut(s)	291, 381
BveI	ACCTGC	1 cut(s)	746
CaiI	CAGNNNCTG	2 cut(s)	179, 1097
CfoI	GCGC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	2 cut(s)	820, 1072
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	3 cut(s)	144, 352, 1001
Eco130I	CCWWGG	1 cut(s)	474
Eco57I	CTGAAG	2 cut(s)	210, 315
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	608
EcoRII	CCWGG	4 cut(s)	90, 172, 190, 442
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	2 cut(s)	823, 1075
FaiI	YATR	8 cut(s)	56, 773, 803, 821, 990, 998, 1020, 1073
FatI	CATG	2 cut(s)	819, 1071
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	4 cut(s)	201, 204, 1095, 1098
FokI	GGATG	3 cut(s)	17, 392, 408
Fsp4HI	GCNGC	4 cut(s)	201, 204, 1095, 1098
FspBI	CTAG	2 cut(s)	507, 567
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	4 cut(s)	201, 204, 1095, 1098
GsuI	CTGGAG	2 cut(s)	84, 764
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	823, 1075
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	2 cut(s)	248, 261
HindII	GTYRAC	2 cut(s)	248, 261
HindIII	AAGCTT	3 cut(s)	393, 456, 634
HinfI	GANTC	5 cut(s)	212, 362, 433, 579, 654
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	5 cut(s)	248, 261, 773, 841, 879
Hpy188III	TCNNGA	6 cut(s)	110, 124, 313, 359, 425, 1052
Hpy8I	GTNNAC	5 cut(s)	248, 261, 773, 841, 879
Hpy99I	CGWCG	2 cut(s)	108, 561
HpyAV	CCTTC	2 cut(s)	246, 834
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	4 cut(s)	244, 250, 266, 556
HpyCH4V	TGCA	6 cut(s)	45, 182, 200, 755, 854, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 752
HpyF3I	CTNAG	3 cut(s)	144, 352, 1001
HpySE526I	ACGT	4 cut(s)	244, 250, 266, 556
Hsp92II	CATG	2 cut(s)	823, 1075
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	445, 536, 710
Lsp1109I	GCAGC	4 cut(s)	212, 215, 1081, 1084
LweI	GCATC	3 cut(s)	10, 742, 1014
MaeI	CTAG	2 cut(s)	507, 567
MaeII	ACGT	4 cut(s)	244, 250, 266, 556
MaeIII	GTNAC	1 cut(s)	1067
MflI	RGATCY	4 cut(s)	176, 194, 303, 348
MluCI	AATT	8 cut(s)	86, 220, 608, 689, 703, 898, 920, 1009
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	8 cut(s)	84, 641, 644, 659, 684, 1023, 1071, 1071
MseI	TTAA	2 cut(s)	150, 702
MslI	CAYNNNNRTG	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	1094
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	4 cut(s)	92, 174, 192, 444
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	4 cut(s)	92, 174, 192, 444
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	59, 752
NlaIII	CATG	2 cut(s)	823, 1075
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	1067
PcsI	WCGNNNNNNNCGW	4 cut(s)	135, 263, 278, 618
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	5 cut(s)	212, 362, 433, 579, 654
PkrI	GCNGC	4 cut(s)	202, 205, 1096, 1099
Ple19I	CGATCG	2 cut(s)	129, 955
Psp6I	CCWGG	4 cut(s)	90, 172, 190, 442
PspGI	CCWGG	4 cut(s)	90, 172, 190, 442
PspN4I	GGNNCC	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	2 cut(s)	179, 1097
PsuI	RGATCY	4 cut(s)	176, 194, 303, 348
PvuI	CGATCG	2 cut(s)	129, 955
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	150, 702
SatI	GCNGC	4 cut(s)	201, 204, 1095, 1098
ScrFI	CCNGG	4 cut(s)	92, 174, 192, 444
SfaNI	GCATC	3 cut(s)	10, 742, 1014
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	8 cut(s)	86, 220, 608, 689, 703, 898, 920, 1009
SspMI	CTAG	2 cut(s)	507, 567
StyD4I	CCNGG	4 cut(s)	90, 172, 190, 442
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	4 cut(s)	247, 253, 269, 559
TaqI	TCGA	7 cut(s)	70, 129, 281, 559, 612, 924, 955
TasI	AATT	8 cut(s)	86, 220, 608, 689, 703, 898, 920, 1009
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	5 cut(s)	212, 362, 433, 579, 654
Tru1I	TTAA	2 cut(s)	150, 702
Tru9I	TTAA	2 cut(s)	150, 702
TscAI	CASTG	2 cut(s)	298, 381
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	4 cut(s)	200, 203, 1094, 1097
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	4 cut(s)	410, 552, 790, 808
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	298, 381
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	3 cut(s)	86, 608, 920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	772
XspI	CTAG	2 cut(s)	507, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.