Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008439

Physical Location & Seq

Genomic Coordinates Forward (+)

57233549 .. 57237949

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0486200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTAGCGGGCAAGTTTCGCATGAATTACAAGTTGAAGTGTCTGCAAGCCAAGCATGGCATCTGTATGACACTCTTGCGCTCGCTAGGTTCGTGGAACAAACTCTCACCGATGTAATTGAAAAAATTGAAGTCGAACAAGGCGATGGAGAACTAGCTAGGCACCATTCTCGAAGTAACATCTGCACCAGAGTTCAATTGGCTTGTAAAGGAATGGAGGAAACTATTGGAGATGATGAAGAACTCAAAGTGGGAATGCAAGTACACTCTAATGATGAGGCTTACAATTTATATAATACCTATGCTTTGAGAAAGGGTTTTAGTGTTCGTAAAGGACATGTTCGAAGAGATTCATCAAATAACATCTGCCAACGAGAATTTCTATGTTCAAAGGAGGGGTTTGCAAGAGACGAGGATGAATTTCAACCAAACAAACACAGGAAGGATGGTAATGGCTACATCAGTGCGGCGGAGCTGGCCCACTCCATGGCCAAGCTTGGCCACGCGCGCACGGTGGAGGAGCTGATTGGGATGATGGAGGAGGCCGATACGGATGGAGATGGCCAAATCGATTTTCAGGAGTTTGCAAGGGCCATTACATCGGCGGCGGTCCATAATCGTTGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

209

Amino Acids

23.56

Weight (kDa)

5.19

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	97 - 146	5e-09	FAR1 DNA-binding domain
EF-hand_7	PF13499	146 - 199	1.9e-10	EF-hand domain pair
EF-hand_8	PF13833	151 - 197	2.7e-07	EF-hand domain pair
EF-hand_1	PF00036	175 - 201	9.9e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57340 AT3G57340
fragaria_vesca	FvH4_1g03490 FvH4_1g03490
malus_domestica	MD02G1033900.v1.1 MD15G1174700.v1.1
prunus_persica	Prupe.7G241200_v2.0.a1 Prupe.7G241200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088701
rosa_laevigata	RLG00000015977
rosa_multiflora	Rmu_co7978266.1_g000001 Rmu_sc0006835.1_g000007 Rmu_sc0015442.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152390
rosa_rugosa	Rorug01G0486000.1 Rorug01G0486100 Rorug01G0486200
rosa_samantha	Rh2AG041500 Rh2BG040200 Rh2CG041100 Rh2DG040600 Rh5CG346200
rosa_wichuraiana	Rw2G003290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	2 cut(s)	506, 508
AciI	CCGC	5 cut(s)	9, 467, 470, 605, 608
AcoI	YGGCCR	3 cut(s)	489, 499, 562
AcsI	RAATTY	2 cut(s)	377, 419
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	6 cut(s)	38, 122, 131, 197, 390, 425
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 558, 590
AluBI	AGCT	4 cut(s)	158, 475, 496, 523
AluI	AGCT	4 cut(s)	158, 475, 496, 523
Alw26I	GTCTC	1 cut(s)	402
AoxI	GGCC	6 cut(s)	477, 489, 499, 543, 562, 591
ApoI	RAATTY	2 cut(s)	377, 419
Asp700I	GAANNNNTTC	1 cut(s)	349
AspLEI	GCGC	3 cut(s)	82, 508, 510
AspS9I	GGNCC	3 cut(s)	478, 591, 610
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	610
BalI	TGGCCA	3 cut(s)	491, 501, 564
BanI	GGYRCC	1 cut(s)	162
BccI	CCATC	5 cut(s)	140, 440, 529, 548, 554
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	3 cut(s)	87, 155, 159
BisI	GCNGC	2 cut(s)	468, 606
BlsI	GCNGC	2 cut(s)	469, 607
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	3 cut(s)	478, 591, 610
BmiI	GGNNCC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	4 cut(s)	421, 451, 537, 559
BseLI	CCNNNNNNNGG	1 cut(s)	487
BsePI	GCGCGC	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	533, 554
BsgI	GTGCAG	1 cut(s)	169
Bsh1236I	CGCG	2 cut(s)	506, 508
BshFI	GGCC	6 cut(s)	479, 491, 501, 545, 564, 593
BshNI	GGYRCC	1 cut(s)	162
BshVI	ATCGAT	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	402
BsmBI	CGTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	6 cut(s)	479, 491, 501, 545, 564, 593
Bsp119I	TTCGAA	1 cut(s)	343
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	5 cut(s)	9, 467, 470, 605, 608
BspANI	GGCC	6 cut(s)	479, 491, 501, 545, 564, 593
BspDI	ATCGAT	1 cut(s)	570
BspFNI	CGCG	2 cut(s)	506, 508
BspLI	GGNNCC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	486
BssHII	GCGCGC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	340
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	5 cut(s)	11, 49, 84, 477, 508
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	4 cut(s)	421, 451, 537, 559
BstFNI	CGCG	2 cut(s)	506, 508
BstHHI	GCGC	3 cut(s)	82, 508, 510
BstMAI	GTCTC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 53, 476, 507
BstNSI	RCATGY	1 cut(s)	341
BstUI	CGCG	2 cut(s)	506, 508
Bsu15I	ATCGAT	1 cut(s)	570
BsuRI	GGCC	6 cut(s)	479, 491, 501, 545, 564, 593
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	421, 451, 537, 559
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	5 cut(s)	11, 49, 84, 477, 508
CfoI	GCGC	3 cut(s)	82, 508, 510
Cfr13I	GGNCC	3 cut(s)	478, 591, 610
ClaI	ATCGAT	1 cut(s)	570
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	5 cut(s)	23, 57, 338, 487, 627
CviQI	GTAC	1 cut(s)	263
EaeI	YGGCCR	3 cut(s)	489, 499, 562
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	402
FaeI	CATG	5 cut(s)	26, 60, 341, 490, 630
FatI	CATG	5 cut(s)	22, 56, 337, 486, 626
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	2 cut(s)	468, 606
FokI	GGATG	4 cut(s)	428, 458, 544, 566
Fsp4HI	GCNGC	2 cut(s)	468, 606
FspBI	CTAG	3 cut(s)	87, 155, 159
GlaI	GCGC	3 cut(s)	81, 507, 509
GluI	GCNGC	2 cut(s)	468, 606
HaeIII	GGCC	6 cut(s)	479, 491, 501, 545, 564, 593
HhaI	GCGC	3 cut(s)	82, 508, 510
Hin1II	CATG	5 cut(s)	26, 60, 341, 490, 630
Hin6I	GCGC	3 cut(s)	80, 506, 508
HinP1I	GCGC	3 cut(s)	80, 506, 508
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	171, 578
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	5 cut(s)	47, 186, 259, 404, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 53, 476, 507
Hsp92II	CATG	5 cut(s)	26, 60, 341, 490, 630
HspAI	GCGC	3 cut(s)	80, 506, 508
LmnI	GCTCC	2 cut(s)	472, 520
LpnPI	CCDG	4 cut(s)	202, 424, 461, 563
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	87, 155, 159
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	2 cut(s)	251, 357
MfeI	CAATTG	1 cut(s)	197
MlsI	TGGCCA	3 cut(s)	491, 501, 564
MluCI	AATT	7 cut(s)	26, 117, 126, 197, 286, 377, 419
MluNI	TGGCCA	3 cut(s)	491, 501, 564
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	7 cut(s)	211, 271, 388, 406, 511, 532, 535
Mox20I	TGGCCA	3 cut(s)	491, 501, 564
MroXI	GAANNNNTTC	1 cut(s)	349
MscI	TGGCCA	3 cut(s)	491, 501, 564
MslI	CAYNNNNRTG	2 cut(s)	66, 270
Msp20I	TGGCCA	3 cut(s)	491, 501, 564
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	261
MvnI	CGCG	2 cut(s)	506, 508
MwoI	GCNNNNNNNGC	4 cut(s)	19, 53, 476, 507
NcoI	CCATGG	1 cut(s)	486
NlaIII	CATG	5 cut(s)	26, 60, 341, 490, 630
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	343
PauI	GCGCGC	1 cut(s)	506
PciI	ACATGT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 141
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	469, 607
PscI	ACATGT	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	478, 591, 610
PteI	GCGCGC	1 cut(s)	506
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	2 cut(s)	66, 270
SatI	GCNGC	2 cut(s)	468, 606
Sau96I	GGNCC	3 cut(s)	478, 591, 610
SetI	ASST	6 cut(s)	92, 160, 302, 477, 498, 525
SfaNI	GCATC	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	2 cut(s)	66, 270
Sse9I	AATT	7 cut(s)	26, 117, 126, 197, 286, 377, 419
SsiI	CCGC	5 cut(s)	9, 467, 470, 605, 608
SspMI	CTAG	3 cut(s)	87, 155, 159
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	4 cut(s)	135, 172, 343, 570
TasI	AATT	7 cut(s)	26, 117, 126, 197, 286, 377, 419
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	470, 608
TfiI	GAWTC	1 cut(s)	350
TscAI	CASTG	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	39, 252, 342, 432
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	2 cut(s)	377, 419
XceI	RCATGY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	3 cut(s)	87, 155, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.