RchiOBHm_Chr2g0088701

Chaperone protein dnaJ 49-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
3158662 .. 3161242
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46400

Sequence Viewer

Length: 1077 bp
ATGGACGGAAACAAAGACGACGCCTTGAAATGTTTTAGAATTGGGAAAGAAGCTTTGGACGGTGGAGATCGGCCCCGCGCCATAAAATTCTTGGCCAAAGCTCGCCGGCTCGATCCGTCGTTACCGATCGACGATCTGTTATCATCGGTTGAGACAGACTCCGACCCTCCGCCGCCTTCAGATGGCGCCAAAACCGCCGACGGGCCTTCCGGGGCGGGTTTGGGTATGCCTCCGCTCCGTCAAAGGACTAGAGCTACCGGGTCGGGTTCCGGGTCCGGGACCGGGTCGTCTGGGTACACGGAGGAGCAGGTTACGATTGTGAGGCAATTGAAGAAGAAGAAGGATTATTATGAGATATTGGGGGTGGAGAGGAGTTGTAGTGTTGAAGACGTTCGAAAAGCTTATAGGAAGCTCTCTTTGAAGGTTCATCCCGATAAGAACAAGGCCCCCGGAGCTGAGGAAGCCTTCAAGTTGGTTTCGAAGGCGTTTCAGTGTCTGAGTAATCAAGAGAGTAGGACGAAGTATGATGTTTCGGGCTCGGATGAGCCGGTTTACGAGAGGAGGCGTGCTCCTAGGCATGCCGGGAATGGGTTCTTCTATGATGGTGGTGATGTTGATGCGGATGAGATATTTAGGAACTTTTTCGGAGGAATGGCTCCGGCAACTACACAGTTCCGGGGGTTCAGTTTCGGGCAAGGGATGGGACCGAGGCCTGCTGAGTATGGTTCGGGTGGGTTCAATGCTCGGACTCTAATTCAGTTGCTGCCTGTGCTGCTTATTTTGCTTCTCAACTTCATGCCGTCTTCGGAGCCTGTTTACTCACTTTCGAGGTCTTATCCTTATGAGTACCGGTTTGCCACGGAAAAGGGTGTGAATTTTTATGTCAAGTCAACCAAGTTTGAGCAAGATTACCCGTCAGGTAGCTTGGACCGTGCCAGACTTGATCAGCAGGTTGAGAGAGATTATTTCAGTGTTCTATCACAGAATTGCCGGCTAGAATTGCAGCGTCGCCAGTGGGGATTTGTACGCGAAACACCACATTGTGACATGTTGAAGCAGTTTGAGGCGGCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

39.85

Weight (kDa)

8.63

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 115 - 176 4e-24 DnaJ domain
DUF1977 PF09320 267 - 338 3.2e-09 Domain of unknown function (DUF1977)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 2 cut(s) 298, 940
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 2 cut(s) 78, 1029
AciI CCGC 8 cut(s) 76, 170, 173, 195, 215, 233, 620, 1067
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 86, 874
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 21, 186
AdeI CACNNNGTG 1 cut(s) 1043
AfaI GTAC 3 cut(s) 296, 848, 1026
AfiI CCNNNNNNNGG 5 cut(s) 182, 201, 276, 282, 588
AflIII ACRYGT 1 cut(s) 1047
AgeI ACCGGT 1 cut(s) 849
AgsI TTSAA 7 cut(s) 28, 331, 386, 421, 469, 739, 1054
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 7 cut(s) 53, 101, 254, 401, 412, 455, 924
AluI AGCT 7 cut(s) 53, 101, 254, 401, 412, 455, 924
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 2 cut(s) 496, 763
AoxI GGCC 5 cut(s) 71, 93, 203, 444, 710
ApeKI GCWGC 3 cut(s) 763, 772, 1003
ApoI RAATTY 2 cut(s) 86, 874
AsiGI ACCGGT 1 cut(s) 849
Asp700I GAANNNNTTC 3 cut(s) 390, 590, 641
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 2 cut(s) 80, 188
AspS9I GGNCC 7 cut(s) 72, 203, 273, 279, 445, 704, 928
AsuC2I CCSGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
AsuHPI GGTGA 1 cut(s) 620
AsuII TTCGAA 2 cut(s) 394, 479
AvaII GGWCC 4 cut(s) 273, 279, 704, 928
AvrII CCTAGG 1 cut(s) 572
BalI TGGCCA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 2 cut(s) 393, 795
Bbv12I GWGCWC 1 cut(s) 571
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 750, 759, 1015
BccI CCATC 3 cut(s) 176, 596, 694
BceAI ACGGC 1 cut(s) 784
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 3 cut(s) 249, 573, 995
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 2 cut(s) 298, 940
BisI GCNGC 5 cut(s) 173, 764, 773, 1004, 1068
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 5 cut(s) 174, 765, 774, 1005, 1069
Bme1390I CCNGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
Bme18I GGWCC 4 cut(s) 273, 279, 704, 928
BmgT120I GGNCC 7 cut(s) 72, 203, 273, 279, 445, 704, 928
BmiI GGNNCC 9 cut(s) 74, 187, 268, 274, 280, 447, 657, 705, 810
BmrFI CCNGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
BmsI GCATC 1 cut(s) 607
BpiI GAAGAC 2 cut(s) 393, 795
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 553, 585
Bpu10I CCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 2 cut(s) 394, 479
BpuMI CCSGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
BsaHI GRCGYC 2 cut(s) 21, 186
BsaJI CCNNGG 6 cut(s) 210, 448, 572, 676, 707, 858
BsaWI WCCGGW 1 cut(s) 849
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 201, 276, 282, 588
Bse118I RCCGGY 4 cut(s) 105, 547, 849, 990
Bse1I ACTGG 1 cut(s) 1012
BseDI CCNNGG 6 cut(s) 210, 448, 572, 676, 707, 858
BseGI GGATG 4 cut(s) 427, 547, 628, 705
BseLI CCNNNNNNNGG 5 cut(s) 182, 201, 276, 282, 588
BseMII CTCAG 3 cut(s) 447, 488, 708
BseNI ACTGG 1 cut(s) 1012
BseRI GAGGAG 3 cut(s) 317, 385, 574
BseXI GCAGC 3 cut(s) 750, 759, 1015
Bsh1236I CGCG 2 cut(s) 78, 1029
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 5 cut(s) 73, 95, 205, 446, 712
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 849
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 571
BslFI GGGAC 2 cut(s) 292, 717
BslI CCNNNNNNNGG 5 cut(s) 182, 201, 276, 282, 588
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 292, 717
BsnI GGCC 5 cut(s) 73, 95, 205, 446, 712
Bsp119I TTCGAA 2 cut(s) 394, 479
Bsp1286I GDGCHC 2 cut(s) 539, 571
Bsp143I GATC 5 cut(s) 67, 112, 126, 133, 943
BspACI CCGC 8 cut(s) 76, 170, 173, 195, 215, 233, 620, 1067
BspANI GGCC 5 cut(s) 73, 95, 205, 446, 712
BspCNI CTCAG 3 cut(s) 448, 489, 709
BspFNI CGCG 2 cut(s) 78, 1029
BspLI GGNNCC 9 cut(s) 74, 187, 268, 274, 280, 447, 657, 705, 810
BspMI ACCTGC 2 cut(s) 298, 940
BspPI GGATC 1 cut(s) 107
BspT104I TTCGAA 2 cut(s) 394, 479
BspT107I GGYRCC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 235
BsrFI RCCGGY 4 cut(s) 105, 547, 849, 990
BsrI ACTGG 1 cut(s) 1012
BssAI RCCGGY 4 cut(s) 105, 547, 849, 990
BssECI CCNNGG 6 cut(s) 210, 448, 572, 676, 707, 858
BssMI GATC 5 cut(s) 67, 112, 126, 133, 943
BssNI GRCGYC 2 cut(s) 21, 186
BssT1I CCWWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 62, 672, 932
BstACI GRCGYC 2 cut(s) 21, 186
BstBI TTCGAA 2 cut(s) 394, 479
BstC8I GCNNGC 6 cut(s) 103, 107, 567, 579, 714, 992
BstDEI CTNAG 3 cut(s) 456, 497, 717
BstDSI CCRYGG 1 cut(s) 858
BstF5I GGATG 4 cut(s) 427, 547, 628, 705
BstFNI CGCG 2 cut(s) 78, 1029
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 80, 188
BstKTI GATC 5 cut(s) 70, 115, 129, 136, 946
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 5 cut(s) 67, 112, 126, 133, 943
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 7 cut(s) 194, 452, 461, 769, 772, 781, 1000
BstNSI RCATGY 2 cut(s) 581, 1051
BstSCI CCNGG 8 cut(s) 209, 257, 269, 275, 281, 448, 581, 675
BstUI CGCG 2 cut(s) 78, 1029
BstV1I GCAGC 3 cut(s) 750, 759, 1015
BstV2I GAAGAC 2 cut(s) 393, 795
BsuRI GGCC 5 cut(s) 73, 95, 205, 446, 712
BtgI CCRYGG 1 cut(s) 858
BtsCI GGATG 4 cut(s) 427, 547, 628, 705
BtsIMutI CAGTG 3 cut(s) 497, 976, 1019
BveI ACCTGC 2 cut(s) 298, 940
Cac8I GCNNGC 6 cut(s) 103, 107, 567, 579, 714, 992
CaiI CAGNNNCTG 2 cut(s) 496, 763
CfoI GCGC 2 cut(s) 80, 188
Cfr10I RCCGGY 4 cut(s) 105, 547, 849, 990
Cfr13I GGNCC 7 cut(s) 72, 203, 273, 279, 445, 704, 928
CseI GACGC 2 cut(s) 29, 995
Csp6I GTAC 3 cut(s) 295, 847, 1025
CspAI ACCGGT 1 cut(s) 849
CviAII CATG 3 cut(s) 578, 796, 1048
CviQI GTAC 3 cut(s) 295, 847, 1025
DdeI CTNAG 3 cut(s) 456, 497, 717
DinI GGCGCC 1 cut(s) 187
DpnI GATC 5 cut(s) 69, 114, 128, 135, 945
DpnII GATC 5 cut(s) 67, 112, 126, 133, 943
DraIII CACNNNGTG 1 cut(s) 1043
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 93
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 712
Eco24I GRGCYC 1 cut(s) 539
Eco47I GGWCC 4 cut(s) 273, 279, 704, 928
Eco57I CTGAAG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 539
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 3 cut(s) 581, 799, 1051
FaqI GGGAC 2 cut(s) 292, 717
FatI CATG 3 cut(s) 577, 795, 1047
FauI CCCGC 2 cut(s) 83, 208
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 5 cut(s) 173, 764, 773, 1004, 1068
FokI GGATG 4 cut(s) 414, 554, 635, 712
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 5 cut(s) 173, 764, 773, 1004, 1068
FspBI CTAG 3 cut(s) 249, 573, 995
GlaI GCGC 2 cut(s) 79, 187
GluI GCNGC 5 cut(s) 173, 764, 773, 1004, 1068
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 5 cut(s) 73, 95, 205, 446, 712
HgaI GACGC 2 cut(s) 29, 995
HhaI GCGC 2 cut(s) 80, 188
Hin1I GRCGYC 2 cut(s) 21, 186
Hin1II CATG 3 cut(s) 581, 799, 1051
Hin6I GCGC 2 cut(s) 78, 186
HinP1I GCGC 2 cut(s) 78, 186
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HindIII AAGCTT 2 cut(s) 51, 399
HinfI GANTC 2 cut(s) 158, 748
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 4 cut(s) 297, 553, 817, 891
Hpy188I TCNGA 7 cut(s) 163, 181, 498, 541, 647, 747, 808
Hpy188III TCNNGA 2 cut(s) 431, 506
Hpy8I GTNNAC 4 cut(s) 297, 553, 817, 891
Hpy99I CGWCG 5 cut(s) 23, 121, 134, 203, 1011
HpyAV CCTTC 6 cut(s) 186, 216, 334, 415, 475, 475
HpyCH4III ACNGT 3 cut(s) 62, 672, 932
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 1003
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 452, 461, 769, 772, 781, 1000
HpyF3I CTNAG 3 cut(s) 456, 497, 717
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 2 cut(s) 21, 186
Hsp92II CATG 3 cut(s) 581, 799, 1051
HspAI GCGC 2 cut(s) 78, 186
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 2 cut(s) 105, 990
KroNI GCCGGC 2 cut(s) 107, 992
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 5 cut(s) 67, 112, 126, 133, 943
LmnI GCTCC 6 cut(s) 240, 304, 452, 574, 661, 808
Lsp1109I GCAGC 3 cut(s) 750, 759, 1015
LweI GCATC 1 cut(s) 607
MaeI CTAG 3 cut(s) 249, 573, 995
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 120, 310, 1043
MalI GATC 5 cut(s) 69, 114, 128, 135, 945
MbiI CCGCTC 1 cut(s) 235
MboI GATC 5 cut(s) 67, 112, 126, 133, 943
MboII GAAGA 6 cut(s) 343, 346, 349, 398, 586, 795
MfeI CAATTG 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 539, 571
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 7 cut(s) 39, 86, 326, 753, 874, 985, 998
MluNI TGGCCA 1 cut(s) 95
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 152, 742
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 105, 990
MroXI GAANNNNTTC 3 cut(s) 390, 590, 641
MscI TGGCCA 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
MunI CAATTG 1 cut(s) 326
MvnI CGCG 2 cut(s) 78, 1029
MwoI GCNNNNNNNGC 7 cut(s) 194, 452, 461, 769, 772, 781, 1000
NaeI GCCGGC 2 cut(s) 107, 992
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
NdeII GATC 5 cut(s) 67, 112, 126, 133, 943
NgoMIV GCCGGC 2 cut(s) 105, 990
NlaIII CATG 3 cut(s) 581, 799, 1051
NlaIV GGNNCC 9 cut(s) 74, 187, 268, 274, 280, 447, 657, 705, 810
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 2 cut(s) 581, 1051
NspV TTCGAA 2 cut(s) 394, 479
PaeI GCATGC 1 cut(s) 581
PceI AGGCCT 1 cut(s) 712
PciI ACATGT 1 cut(s) 1047
PdiI GCCGGC 2 cut(s) 107, 992
PdmI GAANNNNTTC 3 cut(s) 390, 590, 641
PflFI GACNNNGTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 849
PkrI GCNGC 5 cut(s) 174, 765, 774, 1005, 1069
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 2 cut(s) 152, 742
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 152, 742
PscI ACATGT 1 cut(s) 1047
PspN4I GGNNCC 9 cut(s) 74, 187, 268, 274, 280, 447, 657, 705, 810
PspPI GGNCC 7 cut(s) 72, 203, 273, 279, 445, 704, 928
PstNI CAGNNNCTG 2 cut(s) 496, 763
PsyI GACNNNGTC 1 cut(s) 283
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 3 cut(s) 296, 848, 1026
RsaNI GTAC 3 cut(s) 295, 847, 1025
SatI GCNGC 5 cut(s) 173, 764, 773, 1004, 1068
Sau3AI GATC 5 cut(s) 67, 112, 126, 133, 943
Sau96I GGNCC 7 cut(s) 72, 203, 273, 279, 445, 704, 928
SchI GAGTC 2 cut(s) 152, 742
ScrFI CCNGG 8 cut(s) 211, 259, 271, 277, 283, 450, 583, 677
SduI GDGCHC 2 cut(s) 539, 571
SfaNI GCATC 1 cut(s) 607
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 2 cut(s) 394, 479
SinI GGWCC 4 cut(s) 273, 279, 704, 928
SphI GCATGC 1 cut(s) 581
Sse9I AATT 7 cut(s) 39, 86, 326, 753, 874, 985, 998
SseBI AGGCCT 1 cut(s) 712
SsiI CCGC 8 cut(s) 76, 170, 173, 195, 215, 233, 620, 1067
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 3 cut(s) 249, 573, 995
StuI AGGCCT 1 cut(s) 712
StyD4I CCNGG 8 cut(s) 209, 257, 269, 275, 281, 448, 581, 675
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 62, 672, 932
TaiI ACGT 1 cut(s) 393
TaqI TCGA 5 cut(s) 111, 129, 394, 479, 827
TaqII GACCGA 1 cut(s) 721
TasI AATT 7 cut(s) 39, 86, 326, 753, 874, 985, 998
TauI GCSGC 2 cut(s) 175, 1070
TscAI CASTG 3 cut(s) 497, 976, 1019
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 3 cut(s) 763, 772, 1003
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 2 cut(s) 416, 784
TspGWI ACGGA 5 cut(s) 21, 105, 227, 314, 875
TspRI CASTG 3 cut(s) 497, 976, 1019
Tth111I GACNNNGTC 1 cut(s) 283
VpaK11BI GGWCC 4 cut(s) 273, 279, 704, 928
XapI RAATTY 2 cut(s) 86, 874
XceI RCATGY 2 cut(s) 581, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 572
XmnI GAANNNNTTC 3 cut(s) 390, 590, 641
XspI CTAG 3 cut(s) 249, 573, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.