Rw2G003290

Chaperone protein dnaJ 49-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
3074034 .. 3076213
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G003290.1

Sequence Viewer

Length: 1065 bp
ATGGACGGAAACAAAGATGACGCCTTGAAATGTTTTAGAATTGGGAAAGAAGCTTTGGACGGTGGAGATCGGCCCCGCGCCCTAAAATTCTTGGCCAAAGCTCGCCGGCTCGATCCGTCGTTACCGATCGACGATCTGTTATCGTCGGTTGAGAAAGAATCCGACCCTCCGCCGCCTTCAGATGGCGCCAAAACCGCCGACGGGCCTTCCGGGGCGGGTTTGGGTATGCCTCCACTCCGTCAAAGGACTAGAGCTACCGGGTCCGGGACCGGGTCGTCTGGGTACACGGAGGAGCAGGTTACGATTGTGAGGCAATTGAAGAAGAAGAAGGATTATTATGAGATATTGGGGGTGGAGAGGAGTTGTAGTGTTGAGGACGTTCGAAAAGCTTATAGGAAGCTCTCTTTGAAGGTTCATCCCGATAAGAACAAGGCCCCCGGAGCTGAGGAAGCCTTCAAGTTGGTTTCGAAGGCGTTTCAGTGTCTGAGCAATGAAGAGAGTAGGAGGAAGTATGATGTTTCGGGCTCGGATGAGCCGGTTTACGAGAGGAGGCGTGCTCCTAGGCATGCCGGGAATGGGTTCTTCTATGATGGTGGTGATGTTGATGCGGATGAGATATTTAGGAACTTTTTCGGAGGAATGGCTCCGGCAACTACACAGTTCCGGGGGTTCAGTTTCGGGCAAGGGATGGGACCGAGGCCTGCTGAGTATGGTTCGGGTGGGTTCAATGCTCGGACTCTAATTCAGTTGCTGCCTGTGCTGCTTATTTTGCTTCTCAACTTCATGCCGTCTTCAGAGCCTGTTTACTCACTTTCGAGGTCTTATCCTTATGAGCACCGGTTTGCCACGGAAAAGGGCGTGAATTTTTATGTGAAGTCAACCAAGTTTGAGCAAGATTACCCGTCAGGTAGCTTGGACCGTGCCAGACTTGATCAGCAGGTTGAGAGAGATTATTTCAGTGTTCTATCGCAGAATTGCCGGCTAGAATTGCAGCGTCGCCAGTGGGGATTTGTACGCGAAACACCACATTGTGACATGTTGAATCAGTTTAAGGCGGCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

354

Amino Acids

39.59

Weight (kDa)

8.91

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 111 - 172 1e-24 DnaJ domain
DUF1977 PF09320 263 - 334 1.2e-09 Domain of unknown function (DUF1977)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
Acc36I ACCTGC 2 cut(s) 286, 928
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 2 cut(s) 78, 1017
AciI CCGC 8 cut(s) 76, 170, 173, 195, 215, 608, 1055, 1058
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 86, 862
AcuI CTGAAG 2 cut(s) 162, 777
AcyI GRCGYC 2 cut(s) 21, 186
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 2 cut(s) 284, 1014
AfiI CCNNNNNNNGG 5 cut(s) 182, 201, 264, 270, 576
AflIII ACRYGT 1 cut(s) 1035
AgeI ACCGGT 1 cut(s) 837
AgsI TTSAA 6 cut(s) 28, 319, 409, 457, 727, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 7 cut(s) 53, 101, 254, 389, 400, 443, 912
AluI AGCT 7 cut(s) 53, 101, 254, 389, 400, 443, 912
Alw21I GWGCWC 2 cut(s) 559, 837
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 3 cut(s) 484, 751, 800
AoxI GGCC 5 cut(s) 71, 93, 203, 432, 698
ApeKI GCWGC 3 cut(s) 751, 760, 991
ApoI RAATTY 2 cut(s) 86, 862
AsiGI ACCGGT 1 cut(s) 837
Asp700I GAANNNNTTC 2 cut(s) 578, 629
AspA2I CCTAGG 1 cut(s) 560
AspLEI GCGC 2 cut(s) 80, 188
AspS9I GGNCC 7 cut(s) 72, 203, 261, 267, 433, 692, 916
AsuC2I CCSGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 2 cut(s) 382, 467
AvaII GGWCC 4 cut(s) 261, 267, 692, 916
AvrII CCTAGG 1 cut(s) 560
BalI TGGCCA 1 cut(s) 95
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 2 cut(s) 559, 837
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 738, 747, 1003
BccI CCATC 3 cut(s) 176, 584, 682
BceAI ACGGC 1 cut(s) 772
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
BfaI CTAG 3 cut(s) 249, 561, 983
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 2 cut(s) 286, 928
BisI GCNGC 6 cut(s) 173, 752, 761, 992, 1056, 1059
BlnI CCTAGG 1 cut(s) 560
BlsI GCNGC 6 cut(s) 174, 753, 762, 993, 1057, 1060
Bme1390I CCNGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
Bme18I GGWCC 4 cut(s) 261, 267, 692, 916
BmgT120I GGNCC 7 cut(s) 72, 203, 261, 267, 433, 692, 916
BmiI GGNNCC 7 cut(s) 74, 187, 262, 268, 435, 645, 693
BmrFI CCNGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
BmsI GCATC 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 2 cut(s) 541, 573
Bpu10I CCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 2 cut(s) 382, 467
BpuMI CCSGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
BsaHI GRCGYC 2 cut(s) 21, 186
BsaJI CCNNGG 6 cut(s) 210, 436, 560, 664, 695, 846
BsaWI WCCGGW 1 cut(s) 837
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 5 cut(s) 182, 201, 264, 270, 576
Bse118I RCCGGY 4 cut(s) 105, 535, 837, 978
Bse1I ACTGG 1 cut(s) 1000
Bse3DI GCAATG 1 cut(s) 496
BseDI CCNNGG 6 cut(s) 210, 436, 560, 664, 695, 846
BseGI GGATG 4 cut(s) 415, 535, 616, 693
BseLI CCNNNNNNNGG 5 cut(s) 182, 201, 264, 270, 576
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 3 cut(s) 435, 476, 696
BseNI ACTGG 1 cut(s) 1000
BseRI GAGGAG 3 cut(s) 305, 373, 562
BseXI GCAGC 3 cut(s) 738, 747, 1003
Bsh1236I CGCG 2 cut(s) 78, 1017
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 5 cut(s) 73, 95, 205, 434, 700
BshNI GGYRCC 1 cut(s) 185
BshTI ACCGGT 1 cut(s) 837
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 2 cut(s) 559, 837
BslFI GGGAC 2 cut(s) 280, 705
BslI CCNNNNNNNGG 5 cut(s) 182, 201, 264, 270, 576
BsmFI GGGAC 2 cut(s) 280, 705
BsnI GGCC 5 cut(s) 73, 95, 205, 434, 700
Bsp119I TTCGAA 2 cut(s) 382, 467
Bsp1286I GDGCHC 3 cut(s) 527, 559, 837
Bsp143I GATC 5 cut(s) 67, 112, 126, 133, 931
BspACI CCGC 8 cut(s) 76, 170, 173, 195, 215, 608, 1055, 1058
BspANI GGCC 5 cut(s) 73, 95, 205, 434, 700
BspCNI CTCAG 3 cut(s) 436, 477, 697
BspFNI CGCG 2 cut(s) 78, 1017
BspLI GGNNCC 7 cut(s) 74, 187, 262, 268, 435, 645, 693
BspMI ACCTGC 2 cut(s) 286, 928
BspPI GGATC 1 cut(s) 107
BspT104I TTCGAA 2 cut(s) 382, 467
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 496
BsrFI RCCGGY 4 cut(s) 105, 535, 837, 978
BsrI ACTGG 1 cut(s) 1000
BssAI RCCGGY 4 cut(s) 105, 535, 837, 978
BssECI CCNNGG 6 cut(s) 210, 436, 560, 664, 695, 846
BssMI GATC 5 cut(s) 67, 112, 126, 133, 931
BssNI GRCGYC 2 cut(s) 21, 186
BssT1I CCWWGG 1 cut(s) 560
Bst4CI ACNGT 3 cut(s) 62, 660, 920
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 2 cut(s) 21, 186
BstBI TTCGAA 2 cut(s) 382, 467
BstC8I GCNNGC 6 cut(s) 103, 107, 555, 567, 702, 980
BstDEI CTNAG 3 cut(s) 444, 485, 705
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 4 cut(s) 415, 535, 616, 693
BstFNI CGCG 2 cut(s) 78, 1017
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 80, 188
BstKTI GATC 5 cut(s) 70, 115, 129, 136, 934
BstMBI GATC 5 cut(s) 67, 112, 126, 133, 931
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 7 cut(s) 194, 440, 449, 757, 760, 769, 988
BstNSI RCATGY 2 cut(s) 569, 1039
BstSCI CCNGG 7 cut(s) 209, 257, 263, 269, 436, 569, 663
BstUI CGCG 2 cut(s) 78, 1017
BstV1I GCAGC 3 cut(s) 738, 747, 1003
BstV2I GAAGAC 1 cut(s) 783
BsuRI GGCC 5 cut(s) 73, 95, 205, 434, 700
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 4 cut(s) 415, 535, 616, 693
BtsIMutI CAGTG 3 cut(s) 485, 964, 1007
BveI ACCTGC 2 cut(s) 286, 928
Cac8I GCNNGC 6 cut(s) 103, 107, 555, 567, 702, 980
CaiI CAGNNNCTG 3 cut(s) 484, 751, 800
CfoI GCGC 2 cut(s) 80, 188
Cfr10I RCCGGY 4 cut(s) 105, 535, 837, 978
Cfr13I GGNCC 7 cut(s) 72, 203, 261, 267, 433, 692, 916
CseI GACGC 2 cut(s) 29, 983
Csp6I GTAC 2 cut(s) 283, 1013
CspAI ACCGGT 1 cut(s) 837
CviAII CATG 3 cut(s) 566, 784, 1036
CviQI GTAC 2 cut(s) 283, 1013
DdeI CTNAG 3 cut(s) 444, 485, 705
DinI GGCGCC 1 cut(s) 187
DpnI GATC 5 cut(s) 69, 114, 128, 135, 933
DpnII GATC 5 cut(s) 67, 112, 126, 133, 931
DraIII CACNNNGTG 1 cut(s) 1031
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 560
Eco147I AGGCCT 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 4 cut(s) 261, 267, 692, 916
Eco57I CTGAAG 2 cut(s) 162, 777
EcoO109I RGGNCCY 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 560
EcoT38I GRGCYC 1 cut(s) 527
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 3 cut(s) 569, 787, 1039
FaqI GGGAC 2 cut(s) 280, 705
FatI CATG 3 cut(s) 565, 783, 1035
FauI CCCGC 2 cut(s) 83, 208
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 6 cut(s) 173, 752, 761, 992, 1056, 1059
FokI GGATG 4 cut(s) 402, 542, 623, 700
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 6 cut(s) 173, 752, 761, 992, 1056, 1059
FspBI CTAG 3 cut(s) 249, 561, 983
GlaI GCGC 2 cut(s) 79, 187
GluI GCNGC 6 cut(s) 173, 752, 761, 992, 1056, 1059
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 5 cut(s) 73, 95, 205, 434, 700
HgaI GACGC 2 cut(s) 29, 983
HhaI GCGC 2 cut(s) 80, 188
Hin1I GRCGYC 2 cut(s) 21, 186
Hin1II CATG 3 cut(s) 569, 787, 1039
Hin6I GCGC 2 cut(s) 78, 186
HinP1I GCGC 2 cut(s) 78, 186
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 2 cut(s) 51, 387
HinfI GANTC 3 cut(s) 158, 736, 1042
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 4 cut(s) 285, 541, 805, 879
Hpy188I TCNGA 7 cut(s) 163, 181, 486, 529, 635, 735, 796
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 4 cut(s) 285, 541, 805, 879
Hpy99I CGWCG 5 cut(s) 121, 134, 148, 203, 999
HpyAV CCTTC 6 cut(s) 186, 216, 322, 403, 463, 463
HpyCH4III ACNGT 3 cut(s) 62, 660, 920
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 1 cut(s) 991
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 440, 449, 757, 760, 769, 988
HpyF3I CTNAG 3 cut(s) 444, 485, 705
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 2 cut(s) 21, 186
Hsp92II CATG 3 cut(s) 569, 787, 1039
HspAI GCGC 2 cut(s) 78, 186
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 2 cut(s) 105, 978
KroNI GCCGGC 2 cut(s) 107, 980
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 5 cut(s) 67, 112, 126, 133, 931
LmnI GCTCC 4 cut(s) 292, 440, 562, 649
Lsp1109I GCAGC 3 cut(s) 738, 747, 1003
LweI GCATC 1 cut(s) 595
MaeI CTAG 3 cut(s) 249, 561, 983
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 3 cut(s) 120, 298, 1031
MalI GATC 5 cut(s) 69, 114, 128, 135, 933
MboI GATC 5 cut(s) 67, 112, 126, 133, 931
MboII GAAGA 6 cut(s) 331, 334, 337, 506, 574, 783
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 3 cut(s) 527, 559, 837
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 7 cut(s) 39, 86, 314, 741, 862, 973, 986
MluNI TGGCCA 1 cut(s) 95
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 730
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 105, 978
MroXI GAANNNNTTC 2 cut(s) 578, 629
MscI TGGCCA 1 cut(s) 95
MseI TTAA 1 cut(s) 1050
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
MunI CAATTG 1 cut(s) 314
MvnI CGCG 2 cut(s) 78, 1017
MwoI GCNNNNNNNGC 7 cut(s) 194, 440, 449, 757, 760, 769, 988
NaeI GCCGGC 2 cut(s) 107, 980
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
NdeII GATC 5 cut(s) 67, 112, 126, 133, 931
NgoMIV GCCGGC 2 cut(s) 105, 978
NlaIII CATG 3 cut(s) 569, 787, 1039
NlaIV GGNNCC 7 cut(s) 74, 187, 262, 268, 435, 645, 693
NmuCI GTSAC 1 cut(s) 1031
NspI RCATGY 2 cut(s) 569, 1039
NspV TTCGAA 2 cut(s) 382, 467
PaeI GCATGC 1 cut(s) 569
PceI AGGCCT 1 cut(s) 700
PciI ACATGT 1 cut(s) 1035
PdiI GCCGGC 2 cut(s) 107, 980
PdmI GAANNNNTTC 2 cut(s) 578, 629
PfeI GAWTC 2 cut(s) 158, 1042
PflFI GACNNNGTC 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 837
PkrI GCNGC 6 cut(s) 174, 753, 762, 993, 1057, 1060
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 1 cut(s) 730
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 730
PscI ACATGT 1 cut(s) 1035
PspN4I GGNNCC 7 cut(s) 74, 187, 262, 268, 435, 645, 693
PspPI GGNCC 7 cut(s) 72, 203, 261, 267, 433, 692, 916
PstNI CAGNNNCTG 3 cut(s) 484, 751, 800
PsyI GACNNNGTC 1 cut(s) 271
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 2 cut(s) 284, 1014
RsaNI GTAC 2 cut(s) 283, 1013
SaqAI TTAA 1 cut(s) 1050
SatI GCNGC 6 cut(s) 173, 752, 761, 992, 1056, 1059
Sau3AI GATC 5 cut(s) 67, 112, 126, 133, 931
Sau96I GGNCC 7 cut(s) 72, 203, 261, 267, 433, 692, 916
SchI GAGTC 1 cut(s) 730
ScrFI CCNGG 7 cut(s) 211, 259, 265, 271, 438, 571, 665
SduI GDGCHC 3 cut(s) 527, 559, 837
SfaNI GCATC 1 cut(s) 595
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 2 cut(s) 382, 467
SinI GGWCC 4 cut(s) 261, 267, 692, 916
SphI GCATGC 1 cut(s) 569
Sse9I AATT 7 cut(s) 39, 86, 314, 741, 862, 973, 986
SseBI AGGCCT 1 cut(s) 700
SsiI CCGC 8 cut(s) 76, 170, 173, 195, 215, 608, 1055, 1058
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 3 cut(s) 249, 561, 983
StuI AGGCCT 1 cut(s) 700
StyD4I CCNGG 7 cut(s) 209, 257, 263, 269, 436, 569, 663
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 3 cut(s) 62, 660, 920
TaiI ACGT 1 cut(s) 381
TaqI TCGA 5 cut(s) 111, 129, 382, 467, 815
TaqII GACCGA 1 cut(s) 709
TasI AATT 7 cut(s) 39, 86, 314, 741, 862, 973, 986
TauI GCSGC 3 cut(s) 175, 1058, 1061
TfiI GAWTC 2 cut(s) 158, 1042
Tru1I TTAA 1 cut(s) 1050
Tru9I TTAA 1 cut(s) 1050
TscAI CASTG 3 cut(s) 485, 964, 1007
TseFI GTSAC 1 cut(s) 1031
TseI GCWGC 3 cut(s) 751, 760, 991
Tsp45I GTSAC 1 cut(s) 1031
TspDTI ATGAA 3 cut(s) 404, 507, 772
TspGWI ACGGA 5 cut(s) 21, 105, 227, 302, 863
TspRI CASTG 3 cut(s) 485, 964, 1007
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 4 cut(s) 261, 267, 692, 916
XapI RAATTY 2 cut(s) 86, 862
XceI RCATGY 2 cut(s) 569, 1039
XmaJI CCTAGG 1 cut(s) 560
XmnI GAANNNNTTC 2 cut(s) 578, 629
XspI CTAG 3 cut(s) 249, 561, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.