Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7978266.1

Orthogroup ID

OG0008439

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 263

Gene Structure 262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7978266.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 262 bp

atggacggaaacaaagacgacgccttgaaatgttttagaattgggaaagaagctttggacggtggagatcggccccgcgccctaaaattcttggccaaagctcgccggctcgatccgtcgttaccgatcgacgatctgttatcgtcggttgagaaagaatccgaccctccgccgccttcagatggcgccaaaaccgccgacgggccttccggggcgggtttgggtatgcctccgctccgtcaaaggactagagctaccgggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF1977 DnaJ

Protein Analysis

87

Amino Acids

9.18

Weight (kDa)

7.87

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57340 AT3G57340
fragaria_vesca	FvH4_1g03490 FvH4_1g03490
malus_domestica	MD02G1033900.v1.1 MD15G1174700.v1.1
prunus_persica	Prupe.7G241200_v2.0.a1 Prupe.7G241200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0088701
rosa_laevigata	RLG00000015977
rosa_multiflora	Rmu_co7978266.1_g000001 Rmu_sc0006835.1_g000007 Rmu_sc0015442.1_g000016
rosa_roxburghii	Rroxscaffold_2G00152390
rosa_rugosa	Rorug01G0486000.1 Rorug01G0486100 Rorug01G0486200
rosa_samantha	Rh2AG041500 Rh2BG040200 Rh2CG041100 Rh2DG040600 Rh5CG346200
rosa_wichuraiana	Rw2G003290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	78
AciI	CCGC	6 cut(s)	76, 170, 173, 195, 215, 233
AclWI	GGATC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	21, 186
AfiI	CCNNNNNNNGG	2 cut(s)	182, 201
AgsI	TTSAA	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	3 cut(s)	53, 101, 254
AluI	AGCT	3 cut(s)	53, 101, 254
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	3 cut(s)	71, 93, 203
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	2 cut(s)	80, 188
AspS9I	GGNCC	2 cut(s)	72, 203
AsuC2I	CCSGG	2 cut(s)	211, 259
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	185
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	2 cut(s)	211, 259
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	2 cut(s)	211, 259
BmgT120I	GGNCC	2 cut(s)	72, 203
BmiI	GGNNCC	2 cut(s)	74, 187
BmrFI	CCNGG	2 cut(s)	211, 259
BpuMI	CCSGG	2 cut(s)	211, 259
BsaHI	GRCGYC	2 cut(s)	21, 186
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 201
Bse118I	RCCGGY	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	182, 201
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	3 cut(s)	73, 95, 205
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	106, 210, 258
BslI	CCNNNNNNNGG	2 cut(s)	182, 201
BsnI	GGCC	3 cut(s)	73, 95, 205
Bsp143I	GATC	4 cut(s)	67, 112, 126, 133
BspACI	CCGC	6 cut(s)	76, 170, 173, 195, 215, 233
BspANI	GGCC	3 cut(s)	73, 95, 205
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	74, 187
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	67, 112, 126, 133
BssNI	GRCGYC	2 cut(s)	21, 186
Bst4CI	ACNGT	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	21, 186
BstC8I	GCNNGC	2 cut(s)	103, 107
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	80, 188
BstKTI	GATC	4 cut(s)	70, 115, 129, 136
BstMBI	GATC	4 cut(s)	67, 112, 126, 133
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	209, 257
BstUI	CGCG	1 cut(s)	78
BsuRI	GGCC	3 cut(s)	73, 95, 205
Cac8I	GCNNGC	2 cut(s)	103, 107
CfoI	GCGC	2 cut(s)	80, 188
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	72, 203
CseI	GACGC	1 cut(s)	29
CviJI	RGCY	7 cut(s)	53, 73, 95, 101, 109, 205, 254
CviKI_1	RGCY	7 cut(s)	53, 73, 95, 101, 109, 205, 254
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	4 cut(s)	69, 114, 128, 135
DpnII	GATC	4 cut(s)	67, 112, 126, 133
EaeI	YGGCCR	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	162
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaiI	YATR	1 cut(s)	227
FauI	CCCGC	2 cut(s)	83, 208
Fnu4HI	GCNGC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	2 cut(s)	79, 187
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	3 cut(s)	73, 95, 205
HapII	CCGG	3 cut(s)	106, 210, 258
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	80, 188
Hin1I	GRCGYC	2 cut(s)	21, 186
Hin6I	GCGC	2 cut(s)	78, 186
HinP1I	GCGC	2 cut(s)	78, 186
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	3 cut(s)	106, 210, 258
Hpy188I	TCNGA	2 cut(s)	163, 181
Hpy99I	CGWCG	5 cut(s)	23, 121, 134, 148, 203
HpyAV	CCTTC	2 cut(s)	186, 216
HpyCH4III	ACNGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92I	GRCGYC	2 cut(s)	21, 186
HspAI	GCGC	2 cut(s)	78, 186
KasI	GGCGCC	1 cut(s)	185
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	67, 112, 126, 133
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	2 cut(s)	119, 223
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	120
MalI	GATC	4 cut(s)	69, 114, 128, 135
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	4 cut(s)	67, 112, 126, 133
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	39, 86
MluNI	TGGCCA	1 cut(s)	95
Mly113I	GGCGCC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	177, 240
Mox20I	TGGCCA	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	3 cut(s)	106, 210, 258
MspR9I	CCNGG	2 cut(s)	211, 259
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	194
NaeI	GCCGGC	1 cut(s)	107
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	2 cut(s)	211, 259
NdeII	GATC	4 cut(s)	67, 112, 126, 133
NgoMIV	GCCGGC	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	74, 187
PdiI	GCCGGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	174
Ple19I	CGATCG	1 cut(s)	129
PluTI	GGCGCC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	74, 187
PspPI	GGNCC	2 cut(s)	72, 203
PvuI	CGATCG	1 cut(s)	129
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	4 cut(s)	67, 112, 126, 133
Sau96I	GGNCC	2 cut(s)	72, 203
ScrFI	CCNGG	2 cut(s)	211, 259
SetI	ASST	3 cut(s)	55, 103, 256
SfoI	GGCGCC	1 cut(s)	187
Sse9I	AATT	2 cut(s)	39, 86
SsiI	CCGC	6 cut(s)	76, 170, 173, 195, 215, 233
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	209, 257
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	111, 129
TasI	AATT	2 cut(s)	39, 86
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	158
TspGWI	ACGGA	3 cut(s)	21, 105, 227
XapI	RAATTY	1 cut(s)	86
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.