FvH4_1g03490

Chaperone protein dnaJ 49-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
1912229 .. 1914867
2639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03490.t2

Sequence Viewer

Length: 1089 bp
ATGGACGGCAACAAAGACGACGCTTTGAAATGCTTCAGAATCGGGAAGGAAGCTTTGGACGGCGGAGATCGCACACGCGCCTTGAAATTCTTAGCCAAAGCTCGCCGGCTCGATCCGTCCCTACCGATCGACGATCTGTTATCGTCGGTGGAGAAAGACTCCGATCCTCCGCCGCCTGATGGCGCCAAAACCGCCGACGCGCCGGCCGGGTCGGGTCTGGGTATGCCTCCGCTCCGTCAAAGGAAAGCTACCGGGTCGGGGTCCGGGTCCGGGTCCGGGTTGTCGGCGAGTGGGTACACGGCGGAGCAGGTGACGATTGTGAAAGAATTGAAGAAGAAGAAGGATTACTATGAGATTTTGGGAGTGGAGAGGAGTTGTAGTGTGGAAGATGTTCGAAAAGCTTATAGGAAGCTATCTTTGAAGGTTCATCCGGATAAGAACAAGGCCCCCGGTGCCGAGGAGGCTTTTAAATCGGTTTCGAAGGCGTTTCAGTGTCTGAGCAATGCGGAGAATAGGAAGAAGTATGATGTTTCGGGGTCGGATGAGCCGGTTTACGAGAGGAGGCGTGCTCCTAGGCACGGCGGAGGGAATGGGTTTTTCTATGAGGGAGGTGATGTTGATGCGGATGAGATTTTTAGGAACTTCTTTTTCGGGGGAGGAATGGCTCCGGCAACTACACAGTTCCGGGGGTTCAGTTTCGGGCAAGGAATGGGGGCAGCGAGGCCTGCTGAGTATGGCTCTGGTGGGTTCAATGCTAGGACTCTAATTCAGTTGCTGCCTGTGTTGCTTATTTTGCTTCTCAACTTCATGCCGTCTTCAGAGCCTGTTTACTCATTGTCGAGGAATCATCCTTATGAGTACCGGTTTACTACGGAAAGGGGTGTGAATTTTTATGTCAAGTCAACCAAGTTTGAGCAAGATTACCCGTCAGGTAGCTTAGACCGTGCTAGGCTTGATCAGCAGGTTGAGAGAGATTATTTCAGTGTTCTGTCGCAGAACTGTCGGCTAGAATTGCAGCGTCGCCAGTGGGGATTTGTACGTGAAACACCACATTGTGACATGTTGAAGCAGTTTGAGGCGGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

40.1

Weight (kDa)

8.89

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 115 - 176 2.1e-24 DnaJ domain
DUF1977 PF09320 271 - 342 6.5e-10 Domain of unknown function (DUF1977)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 2 cut(s) 298, 952
AccB1I GGYRCC 2 cut(s) 182, 452
AccBSI CCGCTC 1 cut(s) 232
AccII CGCG 2 cut(s) 78, 200
AccIII TCCGGA 1 cut(s) 430
AclWI GGATC 2 cut(s) 107, 158
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 86, 886
AcuI CTGAAG 2 cut(s) 19, 801
AcyI GRCGYC 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 1055
AfaI GTAC 3 cut(s) 296, 860, 1038
AfiI CCNNNNNNNGG 5 cut(s) 179, 258, 270, 276, 578
AflIII ACRYGT 1 cut(s) 1059
AgeI ACCGGT 1 cut(s) 861
AgsI TTSAA 6 cut(s) 28, 85, 331, 421, 751, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 6 cut(s) 53, 101, 248, 401, 412, 936
AluI AGCT 6 cut(s) 53, 101, 248, 401, 412, 936
Alw21I GWGCWC 1 cut(s) 571
AlwI GGATC 2 cut(s) 107, 158
AlwNI CAGNNNCTG 3 cut(s) 496, 775, 824
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 3 cut(s) 204, 444, 722
ApeKI GCWGC 3 cut(s) 716, 775, 1015
ApoI RAATTY 2 cut(s) 86, 886
AsiGI ACCGGT 1 cut(s) 861
Asp700I GAANNNNTTC 2 cut(s) 32, 390
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 3 cut(s) 80, 185, 202
AspS9I GGNCC 4 cut(s) 261, 267, 273, 445
AsuC2I CCSGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
AsuHPI GGTGA 2 cut(s) 322, 623
AsuII TTCGAA 2 cut(s) 394, 479
AvaII GGWCC 3 cut(s) 261, 267, 273
AvrII CCTAGG 1 cut(s) 572
BanI GGYRCC 2 cut(s) 182, 452
BarI GAAGNNNNNNTAC 2 cut(s) 329, 361
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 3 cut(s) 728, 762, 1027
BccI CCATC 1 cut(s) 173
BceAI ACGGC 5 cut(s) 22, 76, 315, 595, 796
BcgI CGANNNNNNTGC 2 cut(s) 983, 1017
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
BfaI CTAG 4 cut(s) 573, 756, 948, 1007
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 2 cut(s) 298, 952
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 5 cut(s) 173, 717, 776, 1016, 1080
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 5 cut(s) 174, 718, 777, 1017, 1081
Bme1390I CCNGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
Bme18I GGWCC 3 cut(s) 261, 267, 273
BmgT120I GGNCC 4 cut(s) 261, 267, 273, 445
BmiI GGNNCC 7 cut(s) 184, 262, 268, 274, 447, 454, 666
BmrFI CCNGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
BmsI GCATC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 807
BplI GAGNNNNNCTC 6 cut(s) 143, 175, 553, 585, 722, 754
Bpu14I TTCGAA 2 cut(s) 394, 479
BpuMI CCSGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
BsaAI YACGTR 1 cut(s) 1040
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 448, 456, 572, 685
BsaWI WCCGGW 2 cut(s) 430, 861
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 600, 630
Bsc4I CCNNNNNNNGG 5 cut(s) 179, 258, 270, 276, 578
Bse118I RCCGGY 4 cut(s) 105, 202, 547, 861
Bse1I ACTGG 1 cut(s) 1024
Bse3DI GCAATG 1 cut(s) 508
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 448, 456, 572, 685
BseGI GGATG 4 cut(s) 427, 547, 631, 847
BseLI CCNNNNNNNGG 5 cut(s) 179, 258, 270, 276, 578
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 488, 720
BseNI ACTGG 1 cut(s) 1024
BseRI GAGGAG 3 cut(s) 385, 473, 574
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 3 cut(s) 728, 762, 1027
Bsh1236I CGCG 2 cut(s) 78, 200
Bsh1285I CGRYCG 2 cut(s) 129, 207
BshFI GGCC 3 cut(s) 206, 446, 724
BshNI GGYRCC 2 cut(s) 182, 452
BshTI ACCGGT 1 cut(s) 861
BsiEI CGRYCG 2 cut(s) 129, 207
BsiHKAI GWGCWC 1 cut(s) 571
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 5 cut(s) 179, 258, 270, 276, 578
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 206, 446, 724
Bsp119I TTCGAA 2 cut(s) 394, 479
Bsp1286I GDGCHC 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 6 cut(s) 67, 112, 126, 133, 163, 955
BspANI GGCC 3 cut(s) 206, 446, 724
BspCNI CTCAG 2 cut(s) 489, 721
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 2 cut(s) 78, 200
BspLI GGNNCC 7 cut(s) 184, 262, 268, 274, 447, 454, 666
BspMI ACCTGC 2 cut(s) 298, 952
BspPI GGATC 2 cut(s) 107, 158
BspT104I TTCGAA 2 cut(s) 394, 479
BspT107I GGYRCC 2 cut(s) 182, 452
BsrBI CCGCTC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 4 cut(s) 105, 202, 547, 861
BsrI ACTGG 1 cut(s) 1024
BssAI RCCGGY 4 cut(s) 105, 202, 547, 861
BssECI CCNNGG 4 cut(s) 448, 456, 572, 685
BssMI GATC 6 cut(s) 67, 112, 126, 133, 163, 955
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 681, 944, 1001
BstACI GRCGYC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 1040
BstBI TTCGAA 2 cut(s) 394, 479
BstC8I GCNNGC 5 cut(s) 103, 107, 204, 567, 726
BstDEI CTNAG 4 cut(s) 91, 497, 729, 937
BstF5I GGATG 4 cut(s) 427, 547, 631, 847
BstFNI CGCG 2 cut(s) 78, 200
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 3 cut(s) 80, 185, 202
BstKTI GATC 6 cut(s) 70, 115, 129, 136, 166, 958
BstMBI GATC 6 cut(s) 67, 112, 126, 133, 163, 955
BstMCI CGRYCG 2 cut(s) 129, 207
BstMWI GCNNNNNNNGC 9 cut(s) 69, 191, 452, 461, 725, 784, 793, 958, 1012
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 7 cut(s) 206, 251, 263, 269, 275, 448, 684
BstUI CGCG 2 cut(s) 78, 200
BstV1I GCAGC 3 cut(s) 728, 762, 1027
BstV2I GAAGAC 1 cut(s) 807
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 3 cut(s) 206, 446, 724
BtsCI GGATG 4 cut(s) 427, 547, 631, 847
BtsIMutI CAGTG 3 cut(s) 497, 988, 1031
BveI ACCTGC 2 cut(s) 298, 952
Cac8I GCNNGC 5 cut(s) 103, 107, 204, 567, 726
CaiI CAGNNNCTG 3 cut(s) 496, 775, 824
CfoI GCGC 3 cut(s) 80, 185, 202
Cfr10I RCCGGY 4 cut(s) 105, 202, 547, 861
Cfr13I GGNCC 4 cut(s) 261, 267, 273, 445
CseI GACGC 3 cut(s) 29, 206, 1007
Csp6I GTAC 3 cut(s) 295, 859, 1037
CspAI ACCGGT 1 cut(s) 861
CviAII CATG 2 cut(s) 808, 1060
CviQI GTAC 3 cut(s) 295, 859, 1037
DdeI CTNAG 4 cut(s) 91, 497, 729, 937
DinI GGCGCC 1 cut(s) 184
DpnI GATC 6 cut(s) 69, 114, 128, 135, 165, 957
DpnII GATC 6 cut(s) 67, 112, 126, 133, 163, 955
DraI TTTAAA 1 cut(s) 469
DraIII CACNNNGTG 1 cut(s) 1055
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
EciI GGCGGA 4 cut(s) 78, 159, 317, 597
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 572
Eco147I AGGCCT 1 cut(s) 724
Eco47I GGWCC 3 cut(s) 261, 267, 273
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 19, 801
EcoO109I RGGNCCY 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 572
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 2 cut(s) 811, 1063
FaqI GGGAC 1 cut(s) 103
FatI CATG 2 cut(s) 807, 1059
FbaI TGATCA 1 cut(s) 955
Fnu4HI GCNGC 5 cut(s) 173, 717, 776, 1016, 1080
FokI GGATG 4 cut(s) 414, 554, 638, 834
Fsp4HI GCNGC 5 cut(s) 173, 717, 776, 1016, 1080
FspBI CTAG 4 cut(s) 573, 756, 948, 1007
GlaI GCGC 3 cut(s) 79, 184, 201
GluI GCNGC 5 cut(s) 173, 717, 776, 1016, 1080
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 206, 446, 724
HgaI GACGC 3 cut(s) 29, 206, 1007
HhaI GCGC 3 cut(s) 80, 185, 202
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 811, 1063
Hin6I GCGC 3 cut(s) 78, 183, 200
HinP1I GCGC 3 cut(s) 78, 183, 200
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 2 cut(s) 51, 399
HinfI GANTC 4 cut(s) 39, 158, 760, 844
HphI GGTGA 2 cut(s) 322, 623
Hpy166II GTNNAC 5 cut(s) 297, 553, 829, 867, 903
Hpy188I TCNGA 5 cut(s) 38, 163, 498, 541, 820
Hpy188III TCNNGA 2 cut(s) 43, 431
Hpy8I GTNNAC 5 cut(s) 297, 553, 829, 867, 903
Hpy99I CGWCG 5 cut(s) 23, 134, 148, 200, 1023
HpyAV CCTTC 4 cut(s) 40, 334, 415, 475
HpyCH4III ACNGT 3 cut(s) 681, 944, 1001
HpyCH4IV ACGT 1 cut(s) 1039
HpyCH4V TGCA 1 cut(s) 1015
HpyF10VI GCNNNNNNNGC 9 cut(s) 69, 191, 452, 461, 725, 784, 793, 958, 1012
HpyF3I CTNAG 4 cut(s) 91, 497, 729, 937
HpySE526I ACGT 1 cut(s) 1039
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 811, 1063
HspAI GCGC 3 cut(s) 78, 183, 200
KasI GGCGCC 1 cut(s) 182
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 2 cut(s) 105, 202
KroNI GCCGGC 2 cut(s) 107, 204
Ksp22I TGATCA 1 cut(s) 955
Kzo9I GATC 6 cut(s) 67, 112, 126, 133, 163, 955
LmnI GCTCC 4 cut(s) 237, 304, 574, 670
Lsp1109I GCAGC 3 cut(s) 728, 762, 1027
LweI GCATC 1 cut(s) 610
MaeI CTAG 4 cut(s) 573, 756, 948, 1007
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 2 cut(s) 310, 1055
MalI GATC 6 cut(s) 69, 114, 128, 135, 165, 957
MbiI CCGCTC 1 cut(s) 232
MboI GATC 6 cut(s) 67, 112, 126, 133, 163, 955
MboII GAAGA 6 cut(s) 343, 346, 349, 398, 529, 807
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 5 cut(s) 86, 326, 765, 886, 1010
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 2 cut(s) 152, 754
MmeI TCCRAC 1 cut(s) 519
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 2 cut(s) 105, 202
MroXI GAANNNNTTC 2 cut(s) 32, 390
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 852
MspR9I CCNGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
MvnI CGCG 2 cut(s) 78, 200
MwoI GCNNNNNNNGC 9 cut(s) 69, 191, 452, 461, 725, 784, 793, 958, 1012
NaeI GCCGGC 2 cut(s) 107, 204
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
NdeII GATC 6 cut(s) 67, 112, 126, 133, 163, 955
NgoMIV GCCGGC 2 cut(s) 105, 202
NlaIII CATG 2 cut(s) 811, 1063
NlaIV GGNNCC 7 cut(s) 184, 262, 268, 274, 447, 454, 666
NmeAIII GCCGAG 1 cut(s) 481
NmuCI GTSAC 2 cut(s) 310, 1055
NspI RCATGY 1 cut(s) 1063
NspV TTCGAA 2 cut(s) 394, 479
PaqCI CACCTGC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 724
PciI ACATGT 1 cut(s) 1059
PdiI GCCGGC 2 cut(s) 107, 204
PdmI GAANNNNTTC 2 cut(s) 32, 390
PfeI GAWTC 2 cut(s) 39, 844
PinAI ACCGGT 1 cut(s) 861
PkrI GCNGC 5 cut(s) 174, 718, 777, 1017, 1081
Ple19I CGATCG 1 cut(s) 129
PleI GAGTC 2 cut(s) 152, 754
PluTI GGCGCC 1 cut(s) 186
PpsI GAGTC 2 cut(s) 152, 754
Ppu21I YACGTR 1 cut(s) 1040
PscI ACATGT 1 cut(s) 1059
PspN4I GGNNCC 7 cut(s) 184, 262, 268, 274, 447, 454, 666
PspPI GGNCC 4 cut(s) 261, 267, 273, 445
PstNI CAGNNNCTG 3 cut(s) 496, 775, 824
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 3 cut(s) 296, 860, 1038
RsaNI GTAC 3 cut(s) 295, 859, 1037
RseI CAYNNNNRTG 1 cut(s) 852
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 5 cut(s) 173, 717, 776, 1016, 1080
Sau3AI GATC 6 cut(s) 67, 112, 126, 133, 163, 955
Sau96I GGNCC 4 cut(s) 261, 267, 273, 445
SchI GAGTC 2 cut(s) 152, 754
ScrFI CCNGG 7 cut(s) 208, 253, 265, 271, 277, 450, 686
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 1 cut(s) 610
SfoI GGCGCC 1 cut(s) 184
SfuI TTCGAA 2 cut(s) 394, 479
SinI GGWCC 3 cut(s) 261, 267, 273
SmiMI CAYNNNNRTG 1 cut(s) 852
Sse9I AATT 5 cut(s) 86, 326, 765, 886, 1010
SseBI AGGCCT 1 cut(s) 724
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 4 cut(s) 573, 756, 948, 1007
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 7 cut(s) 206, 251, 263, 269, 275, 448, 684
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 681, 944, 1001
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 5 cut(s) 111, 129, 394, 479, 839
TasI AATT 5 cut(s) 86, 326, 765, 886, 1010
TauI GCSGC 2 cut(s) 175, 1082
TfiI GAWTC 2 cut(s) 39, 844
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 3 cut(s) 497, 988, 1031
TseFI GTSAC 2 cut(s) 310, 1055
TseI GCWGC 3 cut(s) 716, 775, 1015
Tsp45I GTSAC 2 cut(s) 310, 1055
TspDTI ATGAA 2 cut(s) 416, 796
TspGWI ACGGA 3 cut(s) 105, 224, 887
TspRI CASTG 3 cut(s) 497, 988, 1031
VpaK11BI GGWCC 3 cut(s) 261, 267, 273
XapI RAATTY 2 cut(s) 86, 886
XceI RCATGY 1 cut(s) 1063
XmaJI CCTAGG 1 cut(s) 572
XmnI GAANNNNTTC 2 cut(s) 32, 390
XspI CTAG 4 cut(s) 573, 756, 948, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.