Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Forward (+)

21370757 .. 21373591

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACTGATCCTTATTCCAATTTCTTCACAGACTGGTTCAAGTCTAATCCTTTTCACCATTACCCTAATTCCTCCACTAACCCCTCTCCTCATCCTCTTCCTCCTGTTACTCCTCCCTCTTCCTTCTTCTTCTTCCCTCAATCCGGAGACCTCCGCCGTCCACCGCCGCCACCAACTCCTCCTCCTTCTCCTCCTCTCCGAGAAGCCCTCCCTCTCCTCAGCCTCAGCCCCGCCAACAAACAACAAGACCACCATCACAACCATGACCACCTTATTCAAGAACCACCTTCAACCTCCATGGATGTCGACTACGATCATCACCATCAAGATGATCATCATAACCTCGATGACGATGACCATGACGTCACCGTTGCTCTTCACATAGGCCTTCCAAGCCCTAGTGCTCAAGAGATGGCCTCTTTGCTCATGATGTCTTCTTCTTCCTCTTCCTCGAGGACCACTCATCATCACGAGGACATGAATCACAAGAAAGACCTCGACCATGAGTACAGCCACGGAGCTGTCGGAGGAGGAGAAGATGACGATGAAGATTCAGTCGGCGGAGACGGCGGCTGTAGAATCAGCAGACTCAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGTCCTGTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCTGAATCTCTAAGGGGAACACAACCAACAGGAATGCTAAGGCTTCCGTGCTATTGCTGCGCCCCAGGCTGTCGCAACAACATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAACATGGGATCAAACCTTTCATGTGTAGGAAATGTGGAAAGGCTTTCGCAGTCCGAGGGGACTGGAGAACACATGAGAAGAATTGTGGCAAACTTTGGTATTGCATATGTGGATCTGATTTCAAGCACAAGAGATCTCTCAAAGATCACATCAAGGCTTTTGGGAATGGTCATGGAGCCTACGGAATTGATGGGTTTGATGAAGAAGATGAGCCTGCCTCTGAGGTAGAACAATTAGACAATGATCATGAGTCAATGCAGTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

383

Amino Acids

43.34

Weight (kDa)

6.38

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	263 - 297	4.4e-19	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	300 - 324	7.8e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	366
AbsI	CCTCGAGG	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	6 cut(s)	154, 164, 167, 231, 561, 570
AclWI	GGATC	6 cut(s)	2, 604, 617, 727, 899, 1003
AcuI	CTGAAG	1 cut(s)	838
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	143, 832
AgsI	TTSAA	7 cut(s)	40, 278, 291, 670, 679, 866, 1006
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	1 cut(s)	521
AluI	AGCT	1 cut(s)	521
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	141, 558
AlwI	GGATC	6 cut(s)	2, 604, 617, 727, 899, 1003
Ama87I	CYCGRG	1 cut(s)	451
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	3 cut(s)	385, 414, 637
ApeKI	GCWGC	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	3 cut(s)	456, 638, 737
AsuHPI	GGTGA	3 cut(s)	47, 311, 358
AvaI	CYCGRG	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	456, 737
BamHI	GGATCC	1 cut(s)	609
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	406
BbvCI	CCTCAGC	2 cut(s)	218, 224
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	5 cut(s)	261, 330, 406, 834, 1067
BceAI	ACGGC	2 cut(s)	141, 583
BciT130I	CCWGG	1 cut(s)	804
BclI	TGATCA	2 cut(s)	331, 1126
BcoDI	GTCTC	2 cut(s)	141, 558
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	574
BglII	AGATCT	1 cut(s)	1016
BisI	GCNGC	3 cut(s)	167, 571, 796
BlsI	GCNGC	3 cut(s)	168, 572, 797
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	2 cut(s)	456, 737
BmeT110I	CYCGRG	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	456, 638, 737
BmiI	GGNNCC	2 cut(s)	611, 1060
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	8 cut(s)	192, 224, 401, 433, 445, 477, 1085, 1117
BpmI	CTGGAG	1 cut(s)	967
Bpu10I	CCTNAGC	3 cut(s)	218, 224, 776
BpuEI	CTTGAG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	5 cut(s)	297, 514, 802, 830, 937
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 832
Bse1I	ACTGG	2 cut(s)	38, 950
Bse8I	GATNNNNATC	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	5 cut(s)	297, 514, 802, 830, 937
BseGI	GGATG	3 cut(s)	91, 307, 826
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	143, 832
BseMII	CTCAG	5 cut(s)	232, 238, 638, 659, 1095
BseNI	ACTGG	2 cut(s)	38, 950
BseRI	GAGGAG	9 cut(s)	78, 102, 168, 171, 180, 183, 206, 543, 546
BseXI	GCAGC	1 cut(s)	782
BshFI	GGCC	3 cut(s)	387, 416, 639
BsiHKAI	GWGCWC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	726, 956
BslI	CCNNNNNNNGG	2 cut(s)	143, 832
BsmAI	GTCTC	2 cut(s)	141, 558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	2 cut(s)	726, 956
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	387, 416, 639
Bso31I	GGTCTC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp13I	TCCGGA	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	6 cut(s)	154, 164, 167, 231, 561, 570
BspANI	GGCC	3 cut(s)	387, 416, 639
BspCNI	CTCAG	5 cut(s)	231, 237, 637, 658, 1096
BspEI	TCCGGA	1 cut(s)	143
BspHI	TCATGA	2 cut(s)	426, 1129
BspLI	GGNNCC	2 cut(s)	611, 1060
BspPI	GGATC	6 cut(s)	2, 604, 617, 727, 899, 1003
BspQI	GCTCTTC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	38, 950
BssECI	CCNNGG	5 cut(s)	297, 514, 802, 830, 937
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	297, 830
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	4 cut(s)	102, 124, 381, 451
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	1098
BstDEI	CTNAG	7 cut(s)	218, 224, 624, 645, 749, 776, 1104
BstDSI	CCRYGG	2 cut(s)	297, 514
BstF5I	GGATG	3 cut(s)	91, 307, 826
BstHHI	GCGC	1 cut(s)	800
BstMAI	GTCTC	2 cut(s)	141, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	393, 567, 795, 804
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	3 cut(s)	609, 995, 1016
BstYI	RGATCY	3 cut(s)	609, 995, 1016
BsuRI	GGCC	3 cut(s)	387, 416, 639
BtgI	CCRYGG	2 cut(s)	297, 514
BtsCI	GGATG	3 cut(s)	91, 307, 826
Cac8I	GCNNGC	1 cut(s)	1098
CciI	TCATGA	2 cut(s)	426, 1129
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	456, 638, 737
Csp6I	GTAC	1 cut(s)	508
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	7 cut(s)	218, 224, 624, 645, 749, 776, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	4 cut(s)	102, 124, 381, 451
EarI	CTCTTC	4 cut(s)	102, 124, 381, 451
EciI	GGCGGA	2 cut(s)	143, 576
Eco130I	CCWWGG	2 cut(s)	297, 830
Eco147I	AGGCCT	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	456, 737
Eco57I	CTGAAG	1 cut(s)	838
Eco88I	CYCGRG	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	2 cut(s)	297, 830
EcoT22I	ATGCAT	1 cut(s)	705
ErhI	CCWWGG	2 cut(s)	297, 830
Esp3I	CGTCTC	1 cut(s)	558
FaqI	GGGAC	2 cut(s)	726, 956
FauI	CCCGC	1 cut(s)	238
FauNDI	CATATG	2 cut(s)	705, 989
FbaI	TGATCA	2 cut(s)	331, 1126
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	167, 571, 796
FokI	GGATG	3 cut(s)	78, 314, 813
Fsp4HI	GCNGC	3 cut(s)	167, 571, 796
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	3 cut(s)	167, 571, 796
GsuI	CTGGAG	1 cut(s)	967
HaeIII	GGCC	3 cut(s)	387, 416, 639
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	800
Hin1I	GRCGYC	1 cut(s)	363
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	7 cut(s)	481, 551, 579, 588, 628, 743, 1133
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	3 cut(s)	47, 311, 358
Hpy166II	GTNNAC	2 cut(s)	161, 307
Hpy188I	TCNGA	7 cut(s)	200, 527, 627, 857, 938, 1000, 1105
Hpy188III	TCNNGA	7 cut(s)	144, 278, 326, 407, 427, 470, 1130
Hpy8I	GTNNAC	2 cut(s)	161, 307
HpyAV	CCTTC	7 cut(s)	133, 195, 297, 398, 630, 685, 872
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	4 cut(s)	697, 703, 987, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	393, 567, 795, 804
HpyF3I	CTNAG	7 cut(s)	218, 224, 624, 645, 749, 776, 1104
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	363
HspAI	GCGC	1 cut(s)	798
Kpn2I	TCCGGA	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	331, 1126
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	518, 1058
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	1 cut(s)	690
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	106, 364
MflI	RGATCY	3 cut(s)	609, 995, 1016
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	5 cut(s)	19, 67, 964, 1068, 1115
MlyI	GAGTC	2 cut(s)	582, 1142
MmeI	TCCRAC	1 cut(s)	505
Mph1103I	ATGCAT	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	143
MslI	CAYNNNNRTG	3 cut(s)	261, 327, 698
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	804
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	4 cut(s)	393, 567, 795, 804
NcoI	CCATGG	1 cut(s)	297
NdeI	CATATG	2 cut(s)	705, 989
NlaIV	GGNNCC	2 cut(s)	611, 1060
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	451
PagI	TCATGA	2 cut(s)	426, 1129
PceI	AGGCCT	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	5 cut(s)	481, 551, 579, 628, 743
PkrI	GCNGC	3 cut(s)	168, 572, 797
PleI	GAGTC	2 cut(s)	582, 1141
PpsI	GAGTC	2 cut(s)	582, 1141
PpuMI	RGGWCCY	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	611, 1060
PspPI	GGNCC	3 cut(s)	456, 638, 737
PspPPI	RGGWCCY	1 cut(s)	737
PspXI	VCTCGAGB	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	609, 995, 1016
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	3 cut(s)	261, 327, 698
SalI	GTCGAC	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	381
SatI	GCNGC	3 cut(s)	167, 571, 796
Sau96I	GGNCC	3 cut(s)	456, 638, 737
SchI	GAGTC	2 cut(s)	582, 1142
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	574
Sfr274I	CTCGAG	1 cut(s)	451
SinI	GGWCC	2 cut(s)	456, 737
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	3 cut(s)	261, 327, 698
SmlI	CTYRAG	2 cut(s)	405, 451
SmoI	CTYRAG	2 cut(s)	405, 451
Sse9I	AATT	5 cut(s)	19, 67, 964, 1068, 1115
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	6 cut(s)	154, 164, 167, 231, 561, 570
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	2 cut(s)	297, 830
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	4 cut(s)	306, 345, 452, 498
TasI	AATT	5 cut(s)	19, 67, 964, 1068, 1115
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	2 cut(s)	169, 573
TfiI	GAWTC	5 cut(s)	481, 551, 579, 628, 743
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	795
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	494, 561, 892, 1098
TspGWI	ACGGA	3 cut(s)	531, 774, 1080
VpaK11BI	GGWCC	2 cut(s)	456, 737
XceI	RCATGY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	399
ZraI	GACGTC	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.