Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Forward (+)

10625301 .. 10628049

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGACTACCCCTACTCATCAAATTTCTTCCCAGGTCTCTTCAAATTCAACCCTCTTTATCAACGTCACCATGAACAGCCTCCAAACCCTCCTCCTCCTCCTCCTCCTCATCCTTATGCCCACAACTTTTTCCTCAACCAGTCTCACTCTTTTTACTGCACCACCCAACAAACTGTTACCTCTAGGCCCCCTTCCCCTCCTCTCAGAGAAGCCCTCCCTCTCCTCAGCCGCTTAAGCCCAACAAACCAACAACAACAACATCATCTCCTTCATGAAAATCAACAAGATCATCATCAGTATAAAGATCAAGATGAGGAAGAAGAAGATGATGATGATGAGAGTGTGACTGTTGCACTTCACATAGGGTTGCCTAGCCCTAGTGCTGCTGAGATGGCCTCTGTGCTGTCTGCTGCTGCGGTTGCTTCTTCCTCCTCAGAGATTAGTAGTCATCATCATGAAAAATTAGATCATGGGGGAGATAATGATTCTGCAGGGTACCCCATGAGCTGCAGGCTCAACAAGGGTCAGTATTGGATCCCCACCCCTTCCCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCTGAATCTCTGAGGGGCACTCAACCAACAGGCATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGTTGCAGGAACAACATCGATCACCCTAGAGCAAAGCCGCTAAAAGACTTCAGAACCCTTCAAACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGTAGAAAGTGTGGCAAGGCATTTGCAGTGAGGGGGGATTGGAGAACCCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGGTCCCTTAAAGATCATATCAAGGCCTTTGGGAATGGGCATGCAGCTTATGGCATTGATGGCTTTGAAGAAGAAGATGATCCTGCTTCTGAAGTGGAGCAAGATAATGACTCCATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

355

Amino Acids

40.3

Weight (kDa)

6.77

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	498
AciI	CCGC	3 cut(s)	232, 419, 770
AclWI	GGATC	4 cut(s)	532, 545, 655, 1016
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	2 cut(s)	766, 1053
AfaI	GTAC	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	46, 52, 607, 794, 1010
AjnI	CCWGG	2 cut(s)	34, 730
AluBI	AGCT	3 cut(s)	510, 904, 989
AluI	AGCT	3 cut(s)	510, 904, 989
Alw26I	GTCTC	2 cut(s)	44, 150
AlwI	GGATC	4 cut(s)	532, 545, 655, 1016
AoxI	GGCC	4 cut(s)	188, 396, 665, 966
ApeKI	GCWGC	5 cut(s)	386, 413, 416, 510, 986
ApoI	RAATTY	2 cut(s)	25, 47
Asp718I	GGTACC	1 cut(s)	498
AspS9I	GGNCC	4 cut(s)	189, 566, 665, 945
AsuHPI	GGTGA	2 cut(s)	62, 746
AvaII	GGWCC	2 cut(s)	566, 945
BaeGI	GKGCMC	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	537
BanI	GGYRCC	1 cut(s)	498
BbvCI	CCTCAGC	1 cut(s)	227
BbvI	GCAGC	5 cut(s)	373, 400, 403, 497, 998
BccI	CCATC	2 cut(s)	388, 995
BciT130I	CCWGG	2 cut(s)	36, 732
BcoDI	GTCTC	2 cut(s)	44, 150
BfaI	CTAG	4 cut(s)	186, 375, 381, 759
BfmI	CTRYAG	2 cut(s)	492, 511
BfrI	CTTAAG	1 cut(s)	235
BisI	GCNGC	7 cut(s)	232, 387, 414, 417, 511, 770, 987
BlsI	GCNGC	7 cut(s)	233, 388, 415, 418, 512, 771, 988
Bme1390I	CCNGG	2 cut(s)	36, 732
Bme18I	GGWCC	2 cut(s)	566, 945
BmgT120I	GGNCC	4 cut(s)	189, 566, 665, 945
BmiI	GGNNCC	4 cut(s)	191, 500, 539, 947
BmrFI	CCNGG	2 cut(s)	36, 732
BmsI	GCATC	1 cut(s)	618
BplI	GAGNNNNNCTC	6 cut(s)	201, 233, 383, 415, 670, 702
Bpu10I	CCTNAGC	2 cut(s)	227, 704
Bsa29I	ATCGAT	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bse1I	ACTGG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	36, 732
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	294
BseMII	CTCAG	7 cut(s)	220, 241, 381, 450, 587, 665, 668
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	9 cut(s)	84, 87, 90, 93, 96, 99, 192, 215, 424
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	5 cut(s)	373, 400, 403, 497, 998
BsgI	GTGCAG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	190, 398, 667, 968
BshNI	GGYRCC	1 cut(s)	498
BshVI	ATCGAT	1 cut(s)	750
BslFI	GGGAC	1 cut(s)	931
BsmAI	GTCTC	2 cut(s)	44, 150
BsmFI	GGGAC	1 cut(s)	931
BsnI	GGCC	4 cut(s)	190, 398, 667, 968
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	686
Bsp143I	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
BspACI	CCGC	3 cut(s)	232, 419, 770
BspANI	GGCC	4 cut(s)	190, 398, 667, 968
BspCNI	CTCAG	7 cut(s)	219, 240, 382, 449, 586, 664, 669
BspDI	ATCGAT	1 cut(s)	750
BspHI	TCATGA	2 cut(s)	274, 457
BspLI	GGNNCC	4 cut(s)	191, 500, 539, 947
BspMAI	CTGCAG	2 cut(s)	496, 515
BspPI	GGATC	4 cut(s)	532, 545, 655, 1016
BspT107I	GGYRCC	1 cut(s)	498
BspTI	CTTAAG	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
Bst2UI	CCWGG	2 cut(s)	36, 732
Bst4CI	ACNGT	2 cut(s)	178, 352
Bst6I	CTCTTC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	515, 701, 984
BstDEI	CTNAG	8 cut(s)	206, 227, 390, 436, 573, 651, 677, 704
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	8 cut(s)	292, 310, 472, 540, 650, 754, 958, 1024
BstMAI	GTCTC	2 cut(s)	44, 150
BstMBI	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
BstMWI	GCNNNNNNNGC	7 cut(s)	237, 395, 422, 591, 723, 921, 1002
BstNI	CCWGG	2 cut(s)	36, 732
BstNSI	RCATGY	3 cut(s)	625, 703, 986
BstSCI	CCNGG	2 cut(s)	34, 730
BstSFI	CTRYAG	2 cut(s)	492, 511
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	5 cut(s)	373, 400, 403, 497, 998
BstX2I	RGATCY	2 cut(s)	537, 647
BstYI	RGATCY	2 cut(s)	537, 647
Bsu15I	ATCGAT	1 cut(s)	750
BsuRI	GGCC	4 cut(s)	190, 398, 667, 968
BsuTUI	ATCGAT	1 cut(s)	750
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	3 cut(s)	515, 701, 984
CciI	TCATGA	2 cut(s)	274, 457
Cfr13I	GGNCC	4 cut(s)	189, 566, 665, 945
ClaI	ATCGAT	1 cut(s)	750
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	1 cut(s)	499
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	8 cut(s)	206, 227, 390, 436, 573, 651, 677, 704
DpnI	GATC	8 cut(s)	291, 309, 471, 539, 649, 753, 957, 1023
DpnII	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	566, 945
Eco57I	CTGAAG	2 cut(s)	766, 1053
EcoO109I	RGGNCCY	3 cut(s)	189, 665, 945
EcoRII	CCWGG	2 cut(s)	34, 730
EcoT22I	ATGCAT	1 cut(s)	633
FaqI	GGGAC	1 cut(s)	931
FauNDI	CATATG	1 cut(s)	633
Fnu4HI	GCNGC	7 cut(s)	232, 387, 414, 417, 511, 770, 987
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	7 cut(s)	232, 387, 414, 417, 511, 770, 987
FspBI	CTAG	4 cut(s)	186, 375, 381, 759
GluI	GCNGC	7 cut(s)	232, 387, 414, 417, 511, 770, 987
HaeIII	GGCC	4 cut(s)	190, 398, 667, 968
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	5 cut(s)	488, 556, 671, 819, 1052
HphI	GGTGA	2 cut(s)	62, 746
Hpy188I	TCNGA	6 cut(s)	209, 439, 678, 785, 928, 1033
Hpy188III	TCNNGA	3 cut(s)	275, 311, 458
HpyAV	CCTTC	5 cut(s)	204, 281, 558, 613, 800
HpyCH4III	ACNGT	2 cut(s)	178, 352
HpyCH4IV	ACGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	7 cut(s)	237, 395, 422, 591, 723, 921, 1002
HpyF3I	CTNAG	8 cut(s)	206, 227, 390, 436, 573, 651, 677, 704
HpySE526I	ACGT	1 cut(s)	67
KpnI	GGTACC	1 cut(s)	502
Kzo9I	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
LmnI	GCTCC	1 cut(s)	1039
Lsp1109I	GCAGC	5 cut(s)	373, 400, 403, 497, 998
LweI	GCATC	1 cut(s)	618
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	4 cut(s)	186, 375, 381, 759
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	68, 178, 346
MalI	GATC	8 cut(s)	291, 309, 471, 539, 649, 753, 957, 1023
MboI	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
MflI	RGATCY	2 cut(s)	537, 647
MhlI	GDGCHC	1 cut(s)	686
MluCI	AATT	4 cut(s)	25, 47, 464, 892
MlyI	GAGTC	1 cut(s)	1046
Mph1103I	ATGCAT	1 cut(s)	633
MseI	TTAA	3 cut(s)	236, 933, 951
MslI	CAYNNNNRTG	3 cut(s)	117, 456, 626
MspCI	CTTAAG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	36, 732
MvaI	CCWGG	2 cut(s)	36, 732
MwoI	GCNNNNNNNGC	7 cut(s)	237, 395, 422, 591, 723, 921, 1002
NdeI	CATATG	1 cut(s)	633
NdeII	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
NlaIV	GGNNCC	4 cut(s)	191, 500, 539, 947
NmuCI	GTSAC	2 cut(s)	68, 346
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	3 cut(s)	625, 703, 986
PaeI	GCATGC	2 cut(s)	703, 986
PagI	TCATGA	2 cut(s)	274, 457
PceI	AGGCCT	1 cut(s)	968
PfeI	GAWTC	4 cut(s)	488, 556, 671, 819
PkrI	GCNGC	7 cut(s)	233, 388, 415, 418, 512, 771, 988
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PpuMI	RGGWCCY	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	34, 730
PspGI	CCWGG	2 cut(s)	34, 730
PspN4I	GGNNCC	4 cut(s)	191, 500, 539, 947
PspPI	GGNCC	4 cut(s)	189, 566, 665, 945
PspPPI	RGGWCCY	1 cut(s)	945
PstI	CTGCAG	2 cut(s)	496, 515
PsuI	RGATCY	2 cut(s)	537, 647
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	3 cut(s)	117, 456, 626
SaqAI	TTAA	3 cut(s)	236, 933, 951
SatI	GCNGC	7 cut(s)	232, 387, 414, 417, 511, 770, 987
Sau3AI	GATC	8 cut(s)	289, 307, 469, 537, 647, 751, 955, 1021
Sau96I	GGNCC	4 cut(s)	189, 566, 665, 945
SchI	GAGTC	1 cut(s)	1046
ScrFI	CCNGG	2 cut(s)	36, 732
SduI	GDGCHC	1 cut(s)	686
SetI	ASST	9 cut(s)	40, 70, 185, 512, 605, 736, 906, 947, 991
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	1 cut(s)	618
SfcI	CTRYAG	2 cut(s)	492, 511
SinI	GGWCC	2 cut(s)	566, 945
SmiMI	CAYNNNNRTG	3 cut(s)	117, 456, 626
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SphI	GCATGC	2 cut(s)	703, 986
Sse9I	AATT	4 cut(s)	25, 47, 464, 892
SseBI	AGGCCT	1 cut(s)	968
SsiI	CCGC	3 cut(s)	232, 419, 770
SspMI	CTAG	4 cut(s)	186, 375, 381, 759
StuI	AGGCCT	1 cut(s)	968
StyD4I	CCNGG	2 cut(s)	34, 730
TaaI	ACNGT	2 cut(s)	178, 352
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	750
TasI	AATT	4 cut(s)	25, 47, 464, 892
TauI	GCSGC	2 cut(s)	234, 772
TfiI	GAWTC	4 cut(s)	488, 556, 671, 819
Tru1I	TTAA	3 cut(s)	236, 933, 951
Tru9I	TTAA	3 cut(s)	236, 933, 951
TscAI	CASTG	1 cut(s)	867
TseFI	GTSAC	2 cut(s)	68, 346
TseI	GCWGC	5 cut(s)	386, 413, 416, 510, 986
Tsp45I	GTSAC	2 cut(s)	68, 346
TspDTI	ATGAA	5 cut(s)	90, 263, 291, 474, 820
TspRI	CASTG	1 cut(s)	867
Vha464I	CTTAAG	1 cut(s)	235
VpaK11BI	GGWCC	2 cut(s)	566, 945
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	3 cut(s)	625, 703, 986
XcmI	CCANNNNNNNNNTGG	1 cut(s)	560
XspI	CTAG	4 cut(s)	186, 375, 381, 759
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.