Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

7797116 .. 7799624

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1066400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTGACTACCCCTACTCATCAAATTTCTTCTCAGGTCTGTTAAAATTCAACCCTCTTCATCGTCACCATGAACCACCACCTCAGCCGCCTCCTCATCCTTCACAACCTCCTCCTCCATATGCTCACAACTTCTTCCTCAACCAAACCCACTCCTTTTATTTCCTCACCGACCAACAAAACCTTAACACCAGGCCTCCTTCCCCTCCTCTCAGAGAAGCCCTCCCCCTCCTCAGCCGCCTGAGCCCAACCAACCAGCACTACGATCCCGAAGATCAACAACAACAACATCTTCATGAAGATCATCACCACTTTAAAGATCAACAAGATGAGGAAGATGGTGACGGTGAAGACGATGAGAGTGTGACTGTTGCACTGCACATAGGGTTGCCAAACCCTAGCGATTCTGAAATGGCTTCTGTGCTTTCTGCTGCTGCTAATTCTTCCTCGTCAGAGATGAGCAATGATTCTGCAGGGTACCCCATGACTTGCAGGCTGAACAAGGGTCAGTACTGGATCCCTACCCCTTCTCAGATTCTCATAGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAAGGGCCTGAATCTTTGAGAGGCACTCAACCAACAGGAATGCTTAGGCTTCCTTGCTATTGTTGTACACCAGGTTGCAGGAATAACATCGATCACCCAAGAGCAAAGCCGCTGAAAGACTTCAGAACACTTCAAACACATTACAAGAGGAAACATGGAATCAAGCATTTCATGTGTAGAAAATGTGGCAAGGCGTTTGCGGTGAGGGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATTAAGGCTTTTGGGAATGGGCATGCAGCTTATGGATTTAATGGCTTTGAAGAGGAAGATGAACCTGCTTCTGAAGTAGAGCAAGACAATGAGTCCATGCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

349

Amino Acids

39.83

Weight (kDa)

6.63

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	232 - 266	1.1e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	270 - 293	3.1e-11	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1012
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AciI	CCGC	4 cut(s)	89, 238, 749, 839
AclWI	GGATC	4 cut(s)	260, 511, 524, 634
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	2 cut(s)	745, 1032
AfaI	GTAC	3 cut(s)	479, 512, 706
AgsI	TTSAA	4 cut(s)	52, 586, 773, 989
AhdI	GACNNNNNGTC	1 cut(s)	1030
AjnI	CCWGG	2 cut(s)	191, 709
AluBI	AGCT	2 cut(s)	883, 968
AluI	AGCT	2 cut(s)	883, 968
AlwI	GGATC	4 cut(s)	260, 511, 524, 634
AoxI	GGCC	2 cut(s)	194, 644
ApeKI	GCWGC	4 cut(s)	431, 434, 965, 1039
ApoI	RAATTY	2 cut(s)	25, 47
Asp700I	GAANNNNTTC	1 cut(s)	758
Asp718I	GGTACC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	545, 644
AsuHPI	GGTGA	7 cut(s)	59, 160, 299, 353, 359, 725, 853
AvaII	GGWCC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	84, 233
BbvI	GCAGC	3 cut(s)	418, 421, 977
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	193, 711
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	1012
BglII	AGATCT	1 cut(s)	923
BisI	GCNGC	7 cut(s)	89, 238, 432, 435, 749, 966, 1040
BlsI	GCNGC	7 cut(s)	90, 239, 433, 436, 750, 967, 1041
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	193, 711
Bme18I	GGWCC	1 cut(s)	545
BmeRI	GACNNNNNGTC	1 cut(s)	1030
BmgT120I	GGNCC	2 cut(s)	545, 644
BmiI	GGNNCC	2 cut(s)	479, 518
BmrFI	CCNGG	2 cut(s)	193, 711
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	4 cut(s)	207, 239, 649, 681
Bpu10I	CCTNAGC	4 cut(s)	84, 233, 242, 683
Bsa29I	ATCGAT	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	2 cut(s)	518, 553
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	193, 711
BseCI	ATCGAT	1 cut(s)	729
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	6 cut(s)	48, 98, 226, 233, 247, 545
BseNI	ACTGG	2 cut(s)	518, 553
BseRI	GAGGAG	5 cut(s)	84, 102, 105, 198, 221
BseXI	GCAGC	3 cut(s)	418, 421, 977
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	196, 646
BshNI	GGYRCC	1 cut(s)	477
BshVI	ATCGAT	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	196, 646
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	704
Bsp143I	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
BspACI	CCGC	4 cut(s)	89, 238, 749, 839
BspANI	GGCC	2 cut(s)	196, 646
BspCNI	CTCAG	6 cut(s)	47, 97, 225, 234, 246, 544
BspDI	ATCGAT	1 cut(s)	729
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	479, 518
BspMAI	CTGCAG	1 cut(s)	475
BspMI	ACCTGC	1 cut(s)	1012
BspPI	GGATC	4 cut(s)	260, 511, 524, 634
BspT107I	GGYRCC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	518, 553
BssMI	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
Bst2UI	CCWGG	2 cut(s)	193, 711
Bst4CI	ACNGT	2 cut(s)	347, 370
Bst6I	CTCTTC	2 cut(s)	63, 984
BstAUI	TGTACA	1 cut(s)	704
BstC8I	GCNNGC	3 cut(s)	494, 881, 963
BstDEI	CTNAG	7 cut(s)	34, 84, 212, 233, 242, 531, 683
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	9 cut(s)	268, 277, 304, 322, 519, 629, 733, 926, 937
BstMBI	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 570, 900
BstNI	CCWGG	2 cut(s)	193, 711
BstNSI	RCATGY	2 cut(s)	604, 965
BstSCI	CCNGG	2 cut(s)	191, 709
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	418, 421, 977
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	3 cut(s)	516, 626, 923
BstYI	RGATCY	3 cut(s)	516, 626, 923
Bsu15I	ATCGAT	1 cut(s)	729
BsuRI	GGCC	2 cut(s)	196, 646
BsuTUI	ATCGAT	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	3 cut(s)	494, 881, 963
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	545, 644
ClaI	ATCGAT	1 cut(s)	729
CsiI	ACCWGGT	1 cut(s)	709
Csp6I	GTAC	3 cut(s)	478, 511, 705
CviQI	GTAC	3 cut(s)	478, 511, 705
DdeI	CTNAG	7 cut(s)	34, 84, 212, 233, 242, 531, 683
DpnI	GATC	9 cut(s)	267, 276, 303, 321, 518, 628, 732, 925, 936
DpnII	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
DraI	TTTAAA	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	1030
Eam1104I	CTCTTC	2 cut(s)	63, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	1030
EarI	CTCTTC	2 cut(s)	63, 984
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	745, 1032
EcoO109I	RGGNCCY	2 cut(s)	545, 644
EcoRII	CCWGG	2 cut(s)	191, 709
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	248
FauNDI	CATATG	2 cut(s)	121, 612
Fnu4HI	GCNGC	7 cut(s)	89, 238, 432, 435, 749, 966, 1040
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	7 cut(s)	89, 238, 432, 435, 749, 966, 1040
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	7 cut(s)	89, 238, 432, 435, 749, 966, 1040
HaeIII	GGCC	2 cut(s)	196, 646
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	6 cut(s)	404, 467, 535, 650, 798, 1031
HphI	GGTGA	7 cut(s)	59, 160, 299, 353, 359, 725, 853
Hpy166II	GTNNAC	1 cut(s)	707
Hpy188I	TCNGA	7 cut(s)	215, 409, 454, 534, 764, 907, 1012
Hpy188III	TCNNGA	2 cut(s)	269, 296
Hpy8I	GTNNAC	1 cut(s)	707
HpyAV	CCTTC	4 cut(s)	111, 210, 537, 592
HpyCH4III	ACNGT	2 cut(s)	347, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 570, 900
HpyF3I	CTNAG	7 cut(s)	34, 84, 212, 233, 242, 531, 683
KpnI	GGTACC	1 cut(s)	481
Kzo9I	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
Lsp1109I	GCAGC	3 cut(s)	418, 421, 977
LweI	GCATC	1 cut(s)	597
MabI	ACCWGGT	1 cut(s)	709
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	65, 341, 364
MalI	GATC	9 cut(s)	267, 276, 303, 321, 518, 628, 732, 925, 936
MboI	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
MflI	RGATCY	3 cut(s)	516, 626, 923
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	4 cut(s)	25, 47, 439, 871
MlyI	GAGTC	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	7 cut(s)	44, 186, 315, 912, 930, 942, 978
MslI	CAYNNNNRTG	2 cut(s)	294, 605
MspA1I	CMGCKG	1 cut(s)	751
MspR9I	CCNGG	2 cut(s)	193, 711
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	193, 711
MwoI	GCNNNNNNNGC	3 cut(s)	243, 570, 900
NdeI	CATATG	2 cut(s)	121, 612
NdeII	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
NlaIV	GGNNCC	2 cut(s)	479, 518
NmuCI	GTSAC	3 cut(s)	65, 341, 364
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	2 cut(s)	604, 965
PaeI	GCATGC	1 cut(s)	965
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	5 cut(s)	404, 467, 535, 650, 798
PkrI	GCNGC	7 cut(s)	90, 239, 433, 436, 750, 967, 1041
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	191, 709
PspGI	CCWGG	2 cut(s)	191, 709
PspN4I	GGNNCC	2 cut(s)	479, 518
PspPI	GGNCC	2 cut(s)	545, 644
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	3 cut(s)	516, 626, 923
RsaI	GTAC	3 cut(s)	479, 512, 706
RsaNI	GTAC	3 cut(s)	478, 511, 705
RseI	CAYNNNNRTG	2 cut(s)	294, 605
SaqAI	TTAA	7 cut(s)	44, 186, 315, 912, 930, 942, 978
SatI	GCNGC	7 cut(s)	89, 238, 432, 435, 749, 966, 1040
Sau3AI	GATC	9 cut(s)	265, 274, 301, 319, 516, 626, 730, 923, 934
Sau96I	GGNCC	2 cut(s)	545, 644
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	2 cut(s)	193, 711
SduI	GDGCHC	1 cut(s)	248
SexAI	ACCWGGT	1 cut(s)	709
SfaNI	GCATC	1 cut(s)	597
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	294, 605
SphI	GCATGC	1 cut(s)	965
Sse9I	AATT	4 cut(s)	25, 47, 439, 871
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	4 cut(s)	89, 238, 749, 839
SspMI	CTAG	1 cut(s)	399
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	191, 709
TaaI	ACNGT	2 cut(s)	347, 370
TaqI	TCGA	1 cut(s)	729
TasI	AATT	4 cut(s)	25, 47, 439, 871
TatI	WGTACW	2 cut(s)	510, 704
TauI	GCSGC	3 cut(s)	91, 240, 751
TfiI	GAWTC	5 cut(s)	404, 467, 535, 650, 798
Tru1I	TTAA	7 cut(s)	44, 186, 315, 912, 930, 942, 978
Tru9I	TTAA	7 cut(s)	44, 186, 315, 912, 930, 942, 978
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	3 cut(s)	65, 341, 364
TseI	GCWGC	4 cut(s)	431, 434, 965, 1039
Tsp45I	GTSAC	3 cut(s)	65, 341, 364
TspDTI	ATGAA	6 cut(s)	50, 87, 284, 312, 799, 1014
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	2 cut(s)	604, 965
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	1 cut(s)	399
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.