Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Forward (+)

22916010 .. 22918370

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTGAGTACCCCTACTCATCAAATTTCTTCACAGGTCTCTTCAAATTCAACCCTCGTCTTCATCACCATCACCACCATGAATACCCTTTGATTTCAAACCCTCCTCCTCCGCAACCACAACCTCAACCTCAACCTCAACCTCCCTATGCTCACAACTTCTTCAATATCAACTACAGTCAGAACCACAACCAAGAAGCCCTCCCACTCCTTAACAGCTTAAGCCCAACAAAGCATCATGAAGACGAAGAACAAGAGCATCATCACCATCATGAGTACTACTCCTGTAGTACTGATCAAATGGATGTAGATGACAAGATCAGCAAACCGTACAACAAAGAAGACCATGGGGAAGATGATGAGGCTAGTGTGACTGTTGCACTGCACATAGGACTCCCGAGCCCTAGTGCAGCTGAAATGGCATCTGTGCTTTCTGCAGCTTCTTCTTCCTCAGAAATCAGCACAACTCATGACAAAGATCATGTTATTGGAGATCATGGTGATGATTTAACTGGGTACCCCATGAACAGATCATCGCTCAACAAGGGTCAGTATTGGATCCCAACTCCGTCACAGATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTCTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCCGAGTCTCTAAGAGGAACTCAACCAACAGGCATGCTTAGGCTTCCTTGCTACTGTTGCACACCAGGTTGCAGGAACAACATCGATCACCCGAGAGCGAAGCCCCTGAAAGACTTTAGAACCCTCCAAACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGAAAATGTGGCAAGGCATTTGCAGTGAGAGGAGATTGGAGAACCCACGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGGTCTCTCAAAGATCATATCAAGGCTTTTGGGAATGGGCATGCAGCTTATGGAATTGATGGGTTTGAAGAAGATGATGAGCCTGCATCTGAAGTTGAGCAAGATAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

358

Amino Acids

40.9

Weight (kDa)

6.48

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	246 - 280	1.2e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	283 - 307	7.1e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	516
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	3 cut(s)	553, 566, 676
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	1 cut(s)	1074
AfaI	GTAC	5 cut(s)	11, 278, 292, 332, 518
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	7 cut(s)	46, 52, 99, 166, 619, 628, 1031
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	5 cut(s)	219, 413, 440, 925, 1010
AluI	AGCT	5 cut(s)	219, 413, 440, 925, 1010
Alw26I	GTCTC	3 cut(s)	44, 699, 972
AlwI	GGATC	3 cut(s)	553, 566, 676
Ama87I	CYCGRG	3 cut(s)	397, 689, 778
AoxI	GGCC	1 cut(s)	686
ApaI	GGGCCC	1 cut(s)	690
ApeKI	GCWGC	3 cut(s)	410, 437, 1007
ApoI	RAATTY	2 cut(s)	25, 47
Asp718I	GGTACC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	587, 686, 687
AsuHPI	GGTGA	5 cut(s)	59, 65, 257, 512, 767
AvaI	CYCGRG	3 cut(s)	397, 689, 778
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	516
BanII	GRGCYC	2 cut(s)	404, 690
BauI	CACGAG	1 cut(s)	905
BbsI	GAAGAC	3 cut(s)	53, 249, 348
BbvI	GCAGC	3 cut(s)	422, 449, 1019
BccI	CCATC	3 cut(s)	78, 276, 1016
BciT130I	CCWGG	1 cut(s)	753
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	44, 699, 972
BfaI	CTAG	2 cut(s)	366, 405
BfmI	CTRYAG	3 cut(s)	175, 286, 435
BfrI	CTTAAG	1 cut(s)	220
BisI	GCNGC	3 cut(s)	411, 438, 1008
BlsI	GCNGC	3 cut(s)	412, 439, 1009
BmcAI	AGTACT	2 cut(s)	278, 292
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	3 cut(s)	397, 689, 778
BmgT120I	GGNCC	3 cut(s)	587, 686, 687
BmiI	GGNNCC	3 cut(s)	518, 560, 688
BmrFI	CCNGG	1 cut(s)	753
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	5 cut(s)	244, 268, 431, 639, 1058
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	3 cut(s)	53, 249, 348
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu10I	CCTNAGC	1 cut(s)	725
Bsa29I	ATCGAT	1 cut(s)	771
BsaI	GGTCTC	2 cut(s)	44, 972
BsaJI	CCNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	753
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	3 cut(s)	96, 99, 903
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	422, 449, 1019
BsgI	GTGCAG	3 cut(s)	368, 429, 877
BshFI	GGCC	1 cut(s)	688
BshNI	GGYRCC	1 cut(s)	516
BshVI	ATCGAT	1 cut(s)	771
BsiHKCI	CYCGRG	3 cut(s)	397, 689, 778
BsmAI	GTCTC	3 cut(s)	44, 699, 972
BsnI	GGCC	1 cut(s)	688
Bso31I	GGTCTC	2 cut(s)	44, 972
BsoBI	CYCGRG	3 cut(s)	397, 689, 778
Bsp120I	GGGCCC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	404, 690
Bsp143I	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	688
BspCNI	CTCAG	1 cut(s)	464
BspDI	ATCGAT	1 cut(s)	771
BspHI	TCATGA	3 cut(s)	238, 271, 469
BspLI	GGNNCC	3 cut(s)	518, 560, 688
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	3 cut(s)	553, 566, 676
BspT107I	GGYRCC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	220
BspTNI	GGTCTC	2 cut(s)	44, 972
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
BssSI	CACGAG	1 cut(s)	905
BssT1I	CCWWGG	1 cut(s)	346
Bst2BI	CACGAG	1 cut(s)	905
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	179, 330, 376, 743
Bst6I	CTCTTC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	220
BstC8I	GCNNGC	4 cut(s)	722, 923, 1005, 1047
BstDEI	CTNAG	4 cut(s)	6, 451, 698, 725
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	9 cut(s)	298, 321, 481, 496, 533, 561, 671, 775, 979
BstMAI	GTCTC	3 cut(s)	44, 699, 972
BstMBI	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 612, 744, 942
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	3 cut(s)	646, 724, 1007
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	3 cut(s)	175, 286, 435
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	3 cut(s)	422, 449, 1019
BstV2I	GAAGAC	3 cut(s)	53, 249, 348
BstX2I	RGATCY	2 cut(s)	558, 668
BstYI	RGATCY	2 cut(s)	558, 668
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	688
BsuTUI	ATCGAT	1 cut(s)	771
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	2 cut(s)	380, 888
BtsIMutI	CAGTG	2 cut(s)	380, 888
Cac8I	GCNNGC	4 cut(s)	722, 923, 1005, 1047
CciI	TCATGA	3 cut(s)	238, 271, 469
Cfr13I	GGNCC	3 cut(s)	587, 686, 687
ClaI	ATCGAT	1 cut(s)	771
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	5 cut(s)	10, 277, 291, 331, 517
CviQI	GTAC	5 cut(s)	10, 277, 291, 331, 517
DdeI	CTNAG	4 cut(s)	6, 451, 698, 725
DpnI	GATC	9 cut(s)	297, 320, 480, 495, 532, 560, 670, 774, 978
DpnII	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	2 cut(s)	404, 690
Eco31I	GGTCTC	2 cut(s)	44, 972
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	1 cut(s)	1074
Eco88I	CYCGRG	3 cut(s)	397, 689, 778
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	404, 690
ErhI	CCWWGG	1 cut(s)	346
FauNDI	CATATG	1 cut(s)	654
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	411, 438, 1008
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	404, 690
Fsp4HI	GCNGC	3 cut(s)	411, 438, 1008
FspBI	CTAG	2 cut(s)	366, 405
GluI	GCNGC	3 cut(s)	411, 438, 1008
HaeIII	GGCC	1 cut(s)	688
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	4 cut(s)	393, 577, 692, 840
HphI	GGTGA	5 cut(s)	59, 65, 257, 512, 767
Hpy188I	TCNGA	4 cut(s)	183, 454, 949, 1054
Hpy188III	TCNNGA	5 cut(s)	239, 272, 397, 470, 619
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	4 cut(s)	179, 330, 376, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 612, 744, 942
HpyF3I	CTNAG	4 cut(s)	6, 451, 698, 725
KpnI	GGTACC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
Lsp1109I	GCAGC	3 cut(s)	422, 449, 1019
LweI	GCATC	5 cut(s)	244, 268, 431, 639, 1058
MabI	ACCWGGT	1 cut(s)	751
MaeI	CTAG	2 cut(s)	366, 405
MaeIII	GTNAC	2 cut(s)	370, 570
MalI	GATC	9 cut(s)	297, 320, 480, 495, 532, 560, 670, 774, 978
MboI	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
MflI	RGATCY	2 cut(s)	558, 668
MhlI	GDGCHC	2 cut(s)	404, 690
MluCI	AATT	5 cut(s)	25, 47, 596, 913, 1017
MlyI	GAGTC	2 cut(s)	387, 701
Mph1103I	ATGCAT	1 cut(s)	654
MseI	TTAA	5 cut(s)	213, 221, 509, 954, 1075
MslI	CAYNNNNRTG	4 cut(s)	78, 270, 501, 647
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	753
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	419, 612, 744, 942
NcoI	CCATGG	1 cut(s)	346
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
NlaIV	GGNNCC	3 cut(s)	518, 560, 688
NmuCI	GTSAC	2 cut(s)	370, 570
NsiI	ATGCAT	1 cut(s)	654
NspI	RCATGY	3 cut(s)	646, 724, 1007
PaeI	GCATGC	2 cut(s)	724, 1007
PagI	TCATGA	3 cut(s)	238, 271, 469
PfeI	GAWTC	2 cut(s)	577, 840
PkrI	GCNGC	3 cut(s)	412, 439, 1009
PleI	GAGTC	2 cut(s)	387, 700
PpsI	GAGTC	2 cut(s)	387, 700
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	518, 560, 688
PspOMI	GGGCCC	1 cut(s)	686
PspPI	GGNCC	3 cut(s)	587, 686, 687
PstI	CTGCAG	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	558, 668
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	5 cut(s)	11, 278, 292, 332, 518
RsaNI	GTAC	5 cut(s)	10, 277, 291, 331, 517
RseI	CAYNNNNRTG	4 cut(s)	78, 270, 501, 647
SaqAI	TTAA	5 cut(s)	213, 221, 509, 954, 1075
SatI	GCNGC	3 cut(s)	411, 438, 1008
Sau3AI	GATC	9 cut(s)	295, 318, 478, 493, 530, 558, 668, 772, 976
Sau96I	GGNCC	3 cut(s)	587, 686, 687
ScaI	AGTACT	2 cut(s)	278, 292
SchI	GAGTC	2 cut(s)	387, 701
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	2 cut(s)	404, 690
SexAI	ACCWGGT	1 cut(s)	751
SfaNI	GCATC	5 cut(s)	244, 268, 431, 639, 1058
SfcI	CTRYAG	3 cut(s)	175, 286, 435
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	4 cut(s)	78, 270, 501, 647
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SphI	GCATGC	2 cut(s)	724, 1007
Sse9I	AATT	5 cut(s)	25, 47, 596, 913, 1017
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	366, 405
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	4 cut(s)	179, 330, 376, 743
TaqI	TCGA	1 cut(s)	771
TasI	AATT	5 cut(s)	25, 47, 596, 913, 1017
TatI	WGTACW	2 cut(s)	276, 290
TfiI	GAWTC	2 cut(s)	577, 840
Tru1I	TTAA	5 cut(s)	213, 221, 509, 954, 1075
Tru9I	TTAA	5 cut(s)	213, 221, 509, 954, 1075
TscAI	CASTG	2 cut(s)	387, 888
TseFI	GTSAC	2 cut(s)	370, 570
TseI	GCWGC	3 cut(s)	410, 437, 1007
Tsp45I	GTSAC	2 cut(s)	370, 570
TspDTI	ATGAA	5 cut(s)	53, 96, 255, 539, 841
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	387, 888
Vha464I	CTTAAG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	3 cut(s)	646, 724, 1007
XspI	CTAG	2 cut(s)	366, 405
ZrmI	AGTACT	2 cut(s)	278, 292
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.