Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

5746820 .. 5749194

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTGACTACCCCTACTCATCAAATTTCTTCTCAGGTCTGTTAAAATTCAACCCTCTTCATCGTCGCCATGAACCACCACCTCAGCCGCCTCCTCATCCTTCACAACCTCCTCCTCCCTATGCTCACAACTTCTTCCTTAACCAAACCCACTCCTTTTACTTCCCCACCGACCAACAAAACCTTAACACTAGGCCTCCTTCCCCCCCTCTCATAGAAGCCCTCCCCCTCCTCAGCCGCCTGAGCCCAACCAACCAGCGCCACGATCCCGAAGATCAACAACAACAACATCTTCATGAAGATCATCACCACTTGAAAGATCAACAAGATGAGGAAGATGGTGACGGTGAAGACGATGAGAGTGTGACTGTTGCACTGCACATAGGGTTGCCAAACCCTAGCGCTTCTGAAATGGCTTCTGTGCTTTCTGCTGCAGGTAATTCTTCCTCGTCAGAGATGAGCAATGATTCTGAAGGGTACCCCATGACTTGCAGGCTGAACAAGGGTCAATACTGGATCCCTACCCCTTCTCAGATTCTCATAGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGTGTTCGAAGGAGCCAGATGCATATGTGGGGGCATGGATCGATCAATATAGAAAAGGGCCTGAATCTTTGAGAGGCACTCAACCAACAGGAATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGTTGCAGGAATAACATCGATCACCCAAGAGCAAAGCCGCTGAAAGACTTCAGAACACTTCAAACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTGGCAAGGCGTTTGCGGTGAAGGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAATGGGCATGCAGCTTATGGATTTAATGGCTTTGAAGAGGAAGATGAACCTGCTTCTGAAGTAGAGCAAGACAATGAGTCCATGCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

355

Amino Acids

40.31

Weight (kDa)

6.43

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	425, 1030
Acc65I	GGTACC	1 cut(s)	477
AccB1I	GGYRCC	1 cut(s)	477
AciI	CCGC	4 cut(s)	89, 238, 767, 857
AclWI	GGATC	4 cut(s)	260, 511, 524, 650
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	3 cut(s)	492, 763, 1050
AfaI	GTAC	1 cut(s)	479
AfeI	AGCGCT	1 cut(s)	403
AgsI	TTSAA	5 cut(s)	52, 316, 586, 791, 1007
AhdI	GACNNNNNGTC	1 cut(s)	1048
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	2 cut(s)	901, 986
AluI	AGCT	2 cut(s)	901, 986
AlwI	GGATC	4 cut(s)	260, 511, 524, 650
Aor51HI	AGCGCT	1 cut(s)	403
AoxI	GGCC	2 cut(s)	194, 662
ApeKI	GCWGC	3 cut(s)	431, 983, 1057
ApoI	RAATTY	2 cut(s)	25, 47
Asp700I	GAANNNNTTC	1 cut(s)	776
Asp718I	GGTACC	1 cut(s)	477
AspLEI	GCGC	2 cut(s)	261, 404
AspS9I	GGNCC	2 cut(s)	545, 662
AsuHPI	GGTGA	5 cut(s)	299, 353, 359, 743, 871
AsuII	TTCGAA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	357
BbvCI	CCTCAGC	2 cut(s)	84, 233
BbvI	GCAGC	2 cut(s)	418, 995
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	729
BfaI	CTAG	2 cut(s)	192, 399
BfmI	CTRYAG	1 cut(s)	432
BfoI	RGCGCY	2 cut(s)	262, 405
BfuAI	ACCTGC	2 cut(s)	425, 1030
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	6 cut(s)	89, 238, 432, 767, 984, 1058
BlsI	GCNGC	6 cut(s)	90, 239, 433, 768, 985, 1059
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	1 cut(s)	545
BmeRI	GACNNNNNGTC	1 cut(s)	1048
BmgT120I	GGNCC	2 cut(s)	545, 662
BmiI	GGNNCC	3 cut(s)	479, 518, 618
BmrFI	CCNGG	1 cut(s)	729
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	547
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
Bpu10I	CCTNAGC	4 cut(s)	84, 233, 242, 701
Bpu14I	TTCGAA	1 cut(s)	611
Bsa29I	ATCGAT	2 cut(s)	645, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bse1I	ACTGG	2 cut(s)	518, 553
Bse3DI	GCAATG	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	729
BseCI	ATCGAT	2 cut(s)	645, 747
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	469
BseMII	CTCAG	5 cut(s)	48, 98, 233, 247, 545
BseNI	ACTGG	2 cut(s)	518, 553
BseRI	GAGGAG	4 cut(s)	84, 102, 105, 221
BseXI	GCAGC	2 cut(s)	418, 995
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	2 cut(s)	196, 664
BshNI	GGYRCC	1 cut(s)	477
BshVI	ATCGAT	2 cut(s)	645, 747
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	2 cut(s)	196, 664
Bsp119I	TTCGAA	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	4 cut(s)	89, 238, 767, 857
BspANI	GGCC	2 cut(s)	196, 664
BspCNI	CTCAG	5 cut(s)	47, 97, 234, 246, 544
BspDI	ATCGAT	2 cut(s)	645, 747
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	479, 518, 618
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	2 cut(s)	425, 1030
BspPI	GGATC	4 cut(s)	260, 511, 524, 650
BspT104I	TTCGAA	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	518, 553
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	347, 370
Bst6I	CTCTTC	2 cut(s)	63, 1002
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	494, 899, 981
BstDEI	CTNAG	6 cut(s)	34, 84, 233, 242, 531, 701
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	2 cut(s)	262, 405
BstHHI	GCGC	2 cut(s)	261, 404
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 570, 720, 918
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	2 cut(s)	604, 983
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	418, 995
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	2 cut(s)	516, 941
BstYI	RGATCY	2 cut(s)	516, 941
Bsu15I	ATCGAT	2 cut(s)	645, 747
BsuRI	GGCC	2 cut(s)	196, 664
BsuTUI	ATCGAT	2 cut(s)	645, 747
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	2 cut(s)	374, 611
BtsIMutI	CAGTG	2 cut(s)	374, 611
BveI	ACCTGC	2 cut(s)	425, 1030
Cac8I	GCNNGC	3 cut(s)	494, 899, 981
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	2 cut(s)	261, 404
Cfr13I	GGNCC	2 cut(s)	545, 662
ClaI	ATCGAT	2 cut(s)	645, 747
CsiI	ACCWGGT	1 cut(s)	727
Csp6I	GTAC	1 cut(s)	478
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	6 cut(s)	34, 84, 233, 242, 531, 701
DriI	GACNNNNNGTC	1 cut(s)	1048
Eam1104I	CTCTTC	2 cut(s)	63, 1002
Eam1105I	GACNNNNNGTC	1 cut(s)	1048
EarI	CTCTTC	2 cut(s)	63, 1002
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	545
Eco47III	AGCGCT	1 cut(s)	403
Eco57I	CTGAAG	3 cut(s)	492, 763, 1050
EcoO109I	RGGNCCY	2 cut(s)	545, 662
EcoRII	CCWGG	1 cut(s)	727
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	89, 238, 432, 767, 984, 1058
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	6 cut(s)	89, 238, 432, 767, 984, 1058
FspBI	CTAG	2 cut(s)	192, 399
GlaI	GCGC	2 cut(s)	260, 403
GluI	GCNGC	6 cut(s)	89, 238, 432, 767, 984, 1058
HaeII	RGCGCY	2 cut(s)	262, 405
HaeIII	GGCC	2 cut(s)	196, 664
HhaI	GCGC	2 cut(s)	261, 404
Hin6I	GCGC	2 cut(s)	259, 402
HinP1I	GCGC	2 cut(s)	259, 402
HindIII	AAGCTT	1 cut(s)	899
HinfI	GANTC	5 cut(s)	467, 535, 668, 816, 1049
HphI	GGTGA	5 cut(s)	299, 353, 359, 743, 871
Hpy188I	TCNGA	7 cut(s)	409, 454, 472, 534, 782, 925, 1030
Hpy188III	TCNNGA	2 cut(s)	269, 296
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	7 cut(s)	111, 210, 467, 537, 592, 607, 856
HpyCH4III	ACNGT	2 cut(s)	347, 370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 570, 720, 918
HpyF3I	CTNAG	6 cut(s)	34, 84, 233, 242, 531, 701
HspAI	GCGC	2 cut(s)	259, 402
KpnI	GGTACC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	2 cut(s)	418, 995
LweI	GCATC	1 cut(s)	613
MabI	ACCWGGT	1 cut(s)	727
MaeI	CTAG	2 cut(s)	192, 399
MaeIII	GTNAC	2 cut(s)	341, 364
MflI	RGATCY	2 cut(s)	516, 941
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	4 cut(s)	25, 47, 439, 889
MlyI	GAGTC	1 cut(s)	1058
Mph1103I	ATGCAT	1 cut(s)	628
MroXI	GAANNNNTTC	1 cut(s)	776
MseI	TTAA	6 cut(s)	44, 141, 186, 930, 948, 996
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	769
MspR9I	CCNGG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	243, 570, 720, 918
NdeI	CATATG	1 cut(s)	628
NlaIV	GGNNCC	3 cut(s)	479, 518, 618
NmuCI	GTSAC	2 cut(s)	341, 364
NsiI	ATGCAT	1 cut(s)	628
NspI	RCATGY	2 cut(s)	604, 983
NspV	TTCGAA	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	983
PagI	TCATGA	1 cut(s)	295
PceI	AGGCCT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	776
PfeI	GAWTC	4 cut(s)	467, 535, 668, 816
PkrI	GCNGC	6 cut(s)	90, 239, 433, 768, 985, 1059
PleI	GAGTC	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	1057
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	3 cut(s)	479, 518, 618
PspPI	GGNCC	2 cut(s)	545, 662
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	516, 941
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	6 cut(s)	44, 141, 186, 930, 948, 996
SatI	GCNGC	6 cut(s)	89, 238, 432, 767, 984, 1058
Sau96I	GGNCC	2 cut(s)	545, 662
SchI	GAGTC	1 cut(s)	1058
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	248
SexAI	ACCWGGT	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	611
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	1 cut(s)	294
SphI	GCATGC	1 cut(s)	983
Sse9I	AATT	4 cut(s)	25, 47, 439, 889
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	4 cut(s)	89, 238, 767, 857
SspMI	CTAG	2 cut(s)	192, 399
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	347, 370
TaqI	TCGA	3 cut(s)	611, 645, 747
TasI	AATT	4 cut(s)	25, 47, 439, 889
TauI	GCSGC	3 cut(s)	91, 240, 769
TfiI	GAWTC	4 cut(s)	467, 535, 668, 816
Tru1I	TTAA	6 cut(s)	44, 141, 186, 930, 948, 996
Tru9I	TTAA	6 cut(s)	44, 141, 186, 930, 948, 996
TscAI	CASTG	2 cut(s)	381, 611
TseFI	GTSAC	2 cut(s)	341, 364
TseI	GCWGC	3 cut(s)	431, 983, 1057
Tsp45I	GTSAC	2 cut(s)	341, 364
TspDTI	ATGAA	6 cut(s)	50, 87, 284, 312, 817, 1032
TspRI	CASTG	2 cut(s)	381, 611
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	2 cut(s)	604, 983
XmnI	GAANNNNTTC	1 cut(s)	776
XspI	CTAG	2 cut(s)	192, 399
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.