Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00841

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

83885 .. 86229

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGAGTACCCCTACTCATCAAATTTCTGCACAGGTCTCTTCAAATTCAACCCTCTTCTTCATCACCATCACCACCATGAATACCCTTTGATTTCAAACCCTCCTCCTCCTCCGCAACCACAACCTCAACCTCAACCTCCCTATGCTCACAACTTCTTCAATATCAACTACAATCAGAACCACAACCAGTACTCTTCTTTTTACTCCAGCCAAACCACTCATCATCAACCCCCTTCTCCACCTCTCAGAGAAGCCCTCCCACTCCTTAACCGCTTCAGCCCAACAAAGCATCATGAAGACGAAGAACAAGAGCATCATCACCATCATGAGTACTACTCCTGTAGTACTGATCAAATGGATGTAGATGACAAGATCAGCAAACCGTACAACAAAGAAGACCATGGGGAAGATGATGAGGCTAGTGTGACTGTTGCACTGCACATAGGACTCCCGAGCCCTAGTGCAGCTGAAATGGCATCTGTGCTTTCTGCAGCTTCTTCTTCCTCAGAAATCAGCACAACTCATGACAAAGATCATGTTATTGGAGATCATGGTGATGATTCAACTGGGTACCCCATGAACAGATCGTCGCTCAACAAGGGTCAGTATTGGATCCCAACTCCGTCACAGATTCTCATTGGTCCTACTCAATTCTCTTGCCCTGTCTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCCGAGTCTCTAAGAGGAACTCAACCTACAGGCATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGTTGCAGGAACAACATCGATCACCCGAGAGCGAAGCCCCTGAAAGACTTTAGAACCCTTCAAACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGAAAATGTGGCAAGGCATTTGCAGTGAGAGGAGATTGGAGAACCCACGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGGTCTCTCAAAGATCATATCAAGGCTTTTGGGAATGGGCATGCAGCTTATGGAATTGATGGATTTGAAGAAGATGATGAGCCTGCATCTGAAGTTGAGCAAGATAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

377

Amino Acids

43.09

Weight (kDa)

6.59

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	265 - 299	1.3e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	302 - 326	7.6e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AciI	CCGC	2 cut(s)	116, 274
AclWI	GGATC	3 cut(s)	610, 623, 733
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	2 cut(s)	262, 1131
AfaI	GTAC	6 cut(s)	11, 194, 335, 349, 389, 575
AgsI	TTSAA	9 cut(s)	46, 52, 99, 163, 567, 676, 685, 872, 1088
AjnI	CCWGG	1 cut(s)	808
AluBI	AGCT	4 cut(s)	470, 497, 982, 1067
AluI	AGCT	4 cut(s)	470, 497, 982, 1067
Alw26I	GTCTC	3 cut(s)	44, 756, 1029
AlwI	GGATC	3 cut(s)	610, 623, 733
Ama87I	CYCGRG	3 cut(s)	454, 746, 835
AoxI	GGCC	1 cut(s)	743
ApaI	GGGCCC	1 cut(s)	747
ApeKI	GCWGC	3 cut(s)	467, 494, 1064
ApoI	RAATTY	2 cut(s)	25, 47
Asp718I	GGTACC	1 cut(s)	573
AspS9I	GGNCC	3 cut(s)	644, 743, 744
AsuHPI	GGTGA	5 cut(s)	59, 65, 314, 569, 824
AvaI	CYCGRG	3 cut(s)	454, 746, 835
AvaII	GGWCC	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	747
BamHI	GGATCC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	2 cut(s)	461, 747
BauI	CACGAG	1 cut(s)	962
BbsI	GAAGAC	2 cut(s)	306, 405
BbvI	GCAGC	3 cut(s)	479, 506, 1076
BccI	CCATC	3 cut(s)	78, 333, 1073
BciT130I	CCWGG	1 cut(s)	810
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	3 cut(s)	44, 756, 1029
BfaI	CTAG	2 cut(s)	423, 462
BfmI	CTRYAG	3 cut(s)	343, 492, 771
BisI	GCNGC	3 cut(s)	468, 495, 1065
BlsI	GCNGC	3 cut(s)	469, 496, 1066
BmcAI	AGTACT	3 cut(s)	194, 335, 349
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	644
BmeT110I	CYCGRG	3 cut(s)	454, 746, 835
BmgT120I	GGNCC	3 cut(s)	644, 743, 744
BmiI	GGNNCC	3 cut(s)	575, 617, 745
BmrFI	CCNGG	1 cut(s)	810
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	5 cut(s)	301, 325, 488, 696, 1115
BmuI	ACTGGG	1 cut(s)	579
BpiI	GAAGAC	2 cut(s)	306, 405
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 323, 355
BpmI	CTGGAG	1 cut(s)	193
Bpu10I	CCTNAGC	1 cut(s)	782
Bsa29I	ATCGAT	1 cut(s)	828
BsaI	GGTCTC	2 cut(s)	44, 1029
BsaJI	CCNNGG	1 cut(s)	403
Bse1I	ACTGG	2 cut(s)	190, 574
BseBI	CCWGG	1 cut(s)	810
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	367
BseMII	CTCAG	2 cut(s)	262, 522
BseNI	ACTGG	2 cut(s)	190, 574
BseRI	GAGGAG	4 cut(s)	96, 99, 102, 960
BseSI	GKGCMC	1 cut(s)	747
BseXI	GCAGC	3 cut(s)	479, 506, 1076
BsgI	GTGCAG	4 cut(s)	16, 425, 486, 934
BshFI	GGCC	1 cut(s)	745
BshNI	GGYRCC	1 cut(s)	573
BshVI	ATCGAT	1 cut(s)	828
BsiHKCI	CYCGRG	3 cut(s)	454, 746, 835
BsmAI	GTCTC	3 cut(s)	44, 756, 1029
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	2 cut(s)	44, 1029
BsoBI	CYCGRG	3 cut(s)	454, 746, 835
Bsp120I	GGGCCC	1 cut(s)	743
Bsp1286I	GDGCHC	2 cut(s)	461, 747
Bsp143I	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	2 cut(s)	116, 274
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	261, 521
BspDI	ATCGAT	1 cut(s)	828
BspHI	TCATGA	3 cut(s)	295, 328, 526
BspLI	GGNNCC	3 cut(s)	575, 617, 745
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	3 cut(s)	610, 623, 733
BspT107I	GGYRCC	1 cut(s)	573
BspTNI	GGTCTC	2 cut(s)	44, 1029
BsrI	ACTGG	2 cut(s)	190, 574
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
BssSI	CACGAG	1 cut(s)	962
BssT1I	CCWWGG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	962
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	2 cut(s)	387, 433
Bst6I	CTCTTC	3 cut(s)	47, 63, 202
BstC8I	GCNNGC	4 cut(s)	779, 980, 1062, 1104
BstDEI	CTNAG	5 cut(s)	6, 248, 508, 755, 782
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	9 cut(s)	355, 378, 538, 553, 590, 618, 728, 832, 1036
BstMAI	GTCTC	3 cut(s)	44, 756, 1029
BstMBI	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 669, 801, 999
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	3 cut(s)	703, 781, 1064
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	3 cut(s)	343, 492, 771
BstSLI	GKGCMC	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	479, 506, 1076
BstV2I	GAAGAC	2 cut(s)	306, 405
BstX2I	RGATCY	2 cut(s)	615, 725
BstYI	RGATCY	2 cut(s)	615, 725
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	828
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	2 cut(s)	437, 945
BtsIMutI	CAGTG	2 cut(s)	437, 945
Cac8I	GCNNGC	4 cut(s)	779, 980, 1062, 1104
CciI	TCATGA	3 cut(s)	295, 328, 526
Cfr13I	GGNCC	3 cut(s)	644, 743, 744
ClaI	ATCGAT	1 cut(s)	828
CsiI	ACCWGGT	1 cut(s)	808
Csp6I	GTAC	6 cut(s)	10, 193, 334, 348, 388, 574
CviQI	GTAC	6 cut(s)	10, 193, 334, 348, 388, 574
DdeI	CTNAG	5 cut(s)	6, 248, 508, 755, 782
DpnI	GATC	9 cut(s)	354, 377, 537, 552, 589, 617, 727, 831, 1035
DpnII	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
Eam1104I	CTCTTC	3 cut(s)	47, 63, 202
EarI	CTCTTC	3 cut(s)	47, 63, 202
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	2 cut(s)	461, 747
Eco31I	GGTCTC	2 cut(s)	44, 1029
Eco47I	GGWCC	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	262, 1131
Eco88I	CYCGRG	3 cut(s)	454, 746, 835
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	711
EcoT38I	GRGCYC	2 cut(s)	461, 747
ErhI	CCWWGG	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	468, 495, 1065
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	2 cut(s)	461, 747
Fsp4HI	GCNGC	3 cut(s)	468, 495, 1065
FspBI	CTAG	2 cut(s)	423, 462
GluI	GCNGC	3 cut(s)	468, 495, 1065
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	5 cut(s)	450, 563, 634, 749, 897
HphI	GGTGA	5 cut(s)	59, 65, 314, 569, 824
Hpy188I	TCNGA	5 cut(s)	180, 251, 511, 1006, 1111
Hpy188III	TCNNGA	5 cut(s)	296, 329, 454, 527, 676
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	246, 691, 878
HpyCH4III	ACNGT	2 cut(s)	387, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 669, 801, 999
HpyF3I	CTNAG	5 cut(s)	6, 248, 508, 755, 782
KpnI	GGTACC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
Lsp1109I	GCAGC	3 cut(s)	479, 506, 1076
LweI	GCATC	5 cut(s)	301, 325, 488, 696, 1115
MabI	ACCWGGT	1 cut(s)	808
MaeI	CTAG	2 cut(s)	423, 462
MaeIII	GTNAC	2 cut(s)	427, 627
MalI	GATC	9 cut(s)	354, 377, 537, 552, 589, 617, 727, 831, 1035
MboI	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
MflI	RGATCY	2 cut(s)	615, 725
MhlI	GDGCHC	2 cut(s)	461, 747
MluCI	AATT	5 cut(s)	25, 47, 653, 970, 1074
MlyI	GAGTC	2 cut(s)	444, 758
Mph1103I	ATGCAT	1 cut(s)	711
MseI	TTAA	3 cut(s)	270, 1011, 1132
MslI	CAYNNNNRTG	4 cut(s)	78, 327, 558, 704
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	4 cut(s)	476, 669, 801, 999
NcoI	CCATGG	1 cut(s)	403
NdeI	CATATG	1 cut(s)	711
NdeII	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
NlaIV	GGNNCC	3 cut(s)	575, 617, 745
NmuCI	GTSAC	2 cut(s)	427, 627
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	3 cut(s)	703, 781, 1064
PaeI	GCATGC	2 cut(s)	781, 1064
PagI	TCATGA	3 cut(s)	295, 328, 526
PfeI	GAWTC	3 cut(s)	563, 634, 897
PkrI	GCNGC	3 cut(s)	469, 496, 1066
PleI	GAGTC	2 cut(s)	444, 757
PpsI	GAGTC	2 cut(s)	444, 757
Psp6I	CCWGG	1 cut(s)	808
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	3 cut(s)	575, 617, 745
PspOMI	GGGCCC	1 cut(s)	743
PspPI	GGNCC	3 cut(s)	644, 743, 744
PsrI	GAACNNNNNNTAC	2 cut(s)	754, 786
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	2 cut(s)	615, 725
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	6 cut(s)	11, 194, 335, 349, 389, 575
RsaNI	GTAC	6 cut(s)	10, 193, 334, 348, 388, 574
RseI	CAYNNNNRTG	4 cut(s)	78, 327, 558, 704
SaqAI	TTAA	3 cut(s)	270, 1011, 1132
SatI	GCNGC	3 cut(s)	468, 495, 1065
Sau3AI	GATC	9 cut(s)	352, 375, 535, 550, 587, 615, 725, 829, 1033
Sau96I	GGNCC	3 cut(s)	644, 743, 744
ScaI	AGTACT	3 cut(s)	194, 335, 349
SchI	GAGTC	2 cut(s)	444, 758
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	2 cut(s)	461, 747
SexAI	ACCWGGT	1 cut(s)	808
SfaNI	GCATC	5 cut(s)	301, 325, 488, 696, 1115
SfcI	CTRYAG	3 cut(s)	343, 492, 771
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	4 cut(s)	78, 327, 558, 704
SphI	GCATGC	2 cut(s)	781, 1064
Sse9I	AATT	5 cut(s)	25, 47, 653, 970, 1074
SsiI	CCGC	2 cut(s)	116, 274
SspMI	CTAG	2 cut(s)	423, 462
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	387, 433
TaqI	TCGA	1 cut(s)	828
TasI	AATT	5 cut(s)	25, 47, 653, 970, 1074
TatI	WGTACW	3 cut(s)	192, 333, 347
TfiI	GAWTC	3 cut(s)	563, 634, 897
Tru1I	TTAA	3 cut(s)	270, 1011, 1132
Tru9I	TTAA	3 cut(s)	270, 1011, 1132
TscAI	CASTG	2 cut(s)	444, 945
TseFI	GTSAC	2 cut(s)	427, 627
TseI	GCWGC	3 cut(s)	467, 494, 1064
Tsp45I	GTSAC	2 cut(s)	427, 627
TspDTI	ATGAA	5 cut(s)	53, 96, 312, 596, 898
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	2 cut(s)	444, 945
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	3 cut(s)	703, 781, 1064
XspI	CTAG	2 cut(s)	423, 462
ZrmI	AGTACT	3 cut(s)	194, 335, 349
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.