Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

7175327 .. 7178189

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1066100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTGACTACCCCCACTCATCAAATTTCTTCCCAGGTCTGTTCAAATTCAACCCTCTTCATCGTCACCATGAACATGAACCACCACCTTCAAACCCTCAGCCGCCTCCTCATGCTTCACAACCTTCTCCTCCCTATGCTCACAACTTCTTCCTCAACCAAAACCACTCTTTTTACTTCCCTACCCACCAACAAATCCTTAACACTAGACCCCCTTCCCCTCCTCTCAGAGAAGCCCTCCCCCTCCTCAGCCGCCTGAGCCCAACAAACCAACACCATCACCACCGCGGTCATGAAGATCAACAACAACATCACCATGAAGATCATCACCACTTTAAAGATCAACAAGATGAGGAAGATGGTGACGGTGAAGACGATGAGAGTGTGACACTGCACATAGGATTGCCAAACCCTAGCGCTGCTGAAATGGCTTCTGTGCTTTCTGCTGCAGCTAATTCTTCCTCATCAGAGATGAGCAATAACAGTACTCATCATGAAAAATCAGATCATGGAGATCATGATTCTGCAGGGTACCCCATGAGTTGCAGGTTGAACAAGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTCATAGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTACAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAAGGGCCTGAATCTTTGAGAGGCACTCAACCAACAGGAATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGTTGCAGGAACAACATCGATCATCCGAGGGCAAAGCCACTGAAAGACTTCAGAACCCTTCAAACACATTACAAGAGGAAACATGGAATCAAGCCTTTCACGTGTAGAAAATGTGGCAAGGCGTTTGCGGTGAGGGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCTCTTAAAGATCATATCAAGGCTTTTGGGAATGGGCATGCAGCTTATGGAATTGATGGCTTTGAAGAGGAAGATGAACCTGCTTCTGAAGTAGAGCAAGACAATGAGTCCATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

366

Amino Acids

41.7

Weight (kDa)

6.81

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	250 - 284	1.2e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	287 - 311	4e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	537, 1066
Acc65I	GGTACC	1 cut(s)	531
AccB1I	GGYRCC	1 cut(s)	531
AccII	CGCG	1 cut(s)	288
AciI	CCGC	5 cut(s)	104, 253, 286, 288, 893
AclWI	GGATC	3 cut(s)	565, 578, 688
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	2 cut(s)	799, 1086
AcvI	CACGTG	1 cut(s)	867
AfaI	GTAC	2 cut(s)	487, 533
AfeI	AGCGCT	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	866
AgsI	TTSAA	7 cut(s)	46, 52, 93, 553, 640, 827, 1043
AhdI	GACNNNNNGTC	1 cut(s)	1084
AjnI	CCWGG	2 cut(s)	34, 763
AluBI	AGCT	3 cut(s)	452, 937, 1022
AluI	AGCT	3 cut(s)	452, 937, 1022
AlwI	GGATC	3 cut(s)	565, 578, 688
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	1 cut(s)	698
ApeKI	GCWGC	4 cut(s)	419, 446, 449, 1019
ApoI	RAATTY	2 cut(s)	25, 47
Asp700I	GAANNNNTTC	1 cut(s)	812
Asp718I	GGTACC	1 cut(s)	531
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	599, 698
AsuHPI	GGTGA	7 cut(s)	59, 272, 305, 320, 374, 380, 907
AvaII	GGWCC	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	378
BbvCI	CCTCAGC	2 cut(s)	99, 248
BbvI	GCAGC	4 cut(s)	406, 433, 461, 1031
BccI	CCATC	3 cut(s)	285, 353, 1028
BciT130I	CCWGG	2 cut(s)	36, 765
BfaI	CTAG	2 cut(s)	207, 414
BfmI	CTRYAG	2 cut(s)	447, 525
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	537, 1066
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	6 cut(s)	104, 253, 420, 447, 450, 1020
BlsI	GCNGC	6 cut(s)	105, 254, 421, 448, 451, 1021
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	36, 765
Bme18I	GGWCC	1 cut(s)	599
BmeRI	GACNNNNNGTC	1 cut(s)	1084
BmgT120I	GGNCC	2 cut(s)	599, 698
BmiI	GGNNCC	2 cut(s)	533, 572
BmrFI	CCNGG	2 cut(s)	36, 765
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	601
BpiI	GAAGAC	1 cut(s)	378
BplI	GAGNNNNNCTC	4 cut(s)	222, 254, 703, 735
Bpu10I	CCTNAGC	4 cut(s)	99, 248, 257, 737
Bsa29I	ATCGAT	1 cut(s)	783
BsaAI	YACGTR	1 cut(s)	867
BsaJI	CCNNGG	3 cut(s)	34, 286, 791
Bse1I	ACTGG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	36, 765
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	3 cut(s)	34, 286, 791
BseGI	GGATG	1 cut(s)	787
BseMII	CTCAG	6 cut(s)	113, 241, 248, 262, 599, 698
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	4 cut(s)	99, 120, 213, 236
BseXI	GCAGC	4 cut(s)	406, 433, 461, 1031
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	700
BshNI	GGYRCC	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	263
BspACI	CCGC	5 cut(s)	104, 253, 286, 288, 893
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	6 cut(s)	112, 240, 249, 261, 598, 697
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	3 cut(s)	292, 493, 517
BspLI	GGNNCC	2 cut(s)	533, 572
BspMAI	CTGCAG	2 cut(s)	451, 529
BspMI	ACCTGC	2 cut(s)	537, 1066
BspPI	GGATC	3 cut(s)	565, 578, 688
BspT107I	GGYRCC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	3 cut(s)	34, 286, 791
Bst2UI	CCWGG	2 cut(s)	36, 765
Bst4CI	ACNGT	2 cut(s)	368, 485
Bst6I	CTCTTC	2 cut(s)	63, 1038
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	2 cut(s)	935, 1017
BstDEI	CTNAG	7 cut(s)	99, 227, 248, 257, 585, 684, 737
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	787
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	5 cut(s)	258, 428, 624, 756, 954
BstNI	CCWGG	2 cut(s)	36, 765
BstNSI	RCATGY	2 cut(s)	658, 1019
BstSCI	CCNGG	2 cut(s)	34, 763
BstSFI	CTRYAG	2 cut(s)	447, 525
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	406, 433, 461, 1031
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	3 cut(s)	570, 680, 977
BstYI	RGATCY	3 cut(s)	570, 680, 977
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	700
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	389, 803
BveI	ACCTGC	2 cut(s)	537, 1066
Cac8I	GCNNGC	2 cut(s)	935, 1017
CciI	TCATGA	3 cut(s)	292, 493, 517
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	599, 698
Cfr42I	CCGCGG	1 cut(s)	289
ClaI	ATCGAT	1 cut(s)	783
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	2 cut(s)	486, 532
CviQI	GTAC	2 cut(s)	486, 532
DdeI	CTNAG	7 cut(s)	99, 227, 248, 257, 585, 684, 737
DraI	TTTAAA	1 cut(s)	337
DriI	GACNNNNNGTC	1 cut(s)	1084
Eam1104I	CTCTTC	2 cut(s)	63, 1038
Eam1105I	GACNNNNNGTC	1 cut(s)	1084
EarI	CTCTTC	2 cut(s)	63, 1038
Eco24I	GRGCYC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	599
Eco47III	AGCGCT	1 cut(s)	418
Eco57I	CTGAAG	2 cut(s)	799, 1086
Eco72I	CACGTG	1 cut(s)	867
EcoO109I	RGGNCCY	2 cut(s)	599, 698
EcoRII	CCWGG	2 cut(s)	34, 763
EcoT22I	ATGCAT	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	6 cut(s)	104, 253, 420, 447, 450, 1020
FokI	GGATG	1 cut(s)	774
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	6 cut(s)	104, 253, 420, 447, 450, 1020
FspBI	CTAG	2 cut(s)	207, 414
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	6 cut(s)	104, 253, 420, 447, 450, 1020
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	700
HhaI	GCGC	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	5 cut(s)	521, 589, 704, 852, 1085
HphI	GGTGA	7 cut(s)	59, 272, 305, 320, 374, 380, 907
Hpy188I	TCNGA	8 cut(s)	230, 469, 505, 588, 792, 818, 961, 1066
Hpy188III	TCNNGA	3 cut(s)	293, 494, 518
HpyAV	CCTTC	6 cut(s)	99, 135, 225, 591, 646, 833
HpyCH4III	ACNGT	2 cut(s)	368, 485
HpyCH4IV	ACGT	1 cut(s)	866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	258, 428, 624, 756, 954
HpyF3I	CTNAG	7 cut(s)	99, 227, 248, 257, 585, 684, 737
HpySE526I	ACGT	1 cut(s)	866
HspAI	GCGC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	535
KspI	CCGCGG	1 cut(s)	289
Lsp1109I	GCAGC	4 cut(s)	406, 433, 461, 1031
LweI	GCATC	1 cut(s)	651
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	2 cut(s)	207, 414
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	3 cut(s)	65, 362, 385
MflI	RGATCY	3 cut(s)	570, 680, 977
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	5 cut(s)	25, 47, 454, 925, 1029
MlyI	GAGTC	1 cut(s)	1094
Mph1103I	ATGCAT	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	812
MseI	TTAA	4 cut(s)	201, 336, 966, 984
MslI	CAYNNNNRTG	3 cut(s)	75, 315, 659
MspA1I	CMGCKG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	36, 765
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	36, 765
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	5 cut(s)	258, 428, 624, 756, 954
NdeI	CATATG	1 cut(s)	666
NlaIV	GGNNCC	2 cut(s)	533, 572
NmuCI	GTSAC	3 cut(s)	65, 362, 385
NsiI	ATGCAT	1 cut(s)	666
NspI	RCATGY	2 cut(s)	658, 1019
PaeI	GCATGC	1 cut(s)	1019
PagI	TCATGA	3 cut(s)	292, 493, 517
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	812
PfeI	GAWTC	4 cut(s)	521, 589, 704, 852
PkrI	GCNGC	6 cut(s)	105, 254, 421, 448, 451, 1021
PleI	GAGTC	1 cut(s)	1093
PmaCI	CACGTG	1 cut(s)	867
PmlI	CACGTG	1 cut(s)	867
PpsI	GAGTC	1 cut(s)	1093
Ppu21I	YACGTR	1 cut(s)	867
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	34, 763
PspCI	CACGTG	1 cut(s)	867
PspGI	CCWGG	2 cut(s)	34, 763
PspN4I	GGNNCC	2 cut(s)	533, 572
PspPI	GGNCC	2 cut(s)	599, 698
PspPPI	RGGWCCY	1 cut(s)	599
PstI	CTGCAG	2 cut(s)	451, 529
PsuI	RGATCY	3 cut(s)	570, 680, 977
RsaI	GTAC	2 cut(s)	487, 533
RsaNI	GTAC	2 cut(s)	486, 532
RseI	CAYNNNNRTG	3 cut(s)	75, 315, 659
SacII	CCGCGG	1 cut(s)	289
SaqAI	TTAA	4 cut(s)	201, 336, 966, 984
SatI	GCNGC	6 cut(s)	104, 253, 420, 447, 450, 1020
Sau96I	GGNCC	2 cut(s)	599, 698
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	1 cut(s)	1094
ScrFI	CCNGG	2 cut(s)	36, 765
SduI	GDGCHC	1 cut(s)	263
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	1 cut(s)	651
SfcI	CTRYAG	2 cut(s)	447, 525
Sfr303I	CCGCGG	1 cut(s)	289
SgrBI	CCGCGG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	3 cut(s)	75, 315, 659
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	5 cut(s)	25, 47, 454, 925, 1029
SsiI	CCGC	5 cut(s)	104, 253, 286, 288, 893
SspMI	CTAG	2 cut(s)	207, 414
StyD4I	CCNGG	2 cut(s)	34, 763
TaaI	ACNGT	2 cut(s)	368, 485
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	783
TasI	AATT	5 cut(s)	25, 47, 454, 925, 1029
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	2 cut(s)	106, 255
TfiI	GAWTC	4 cut(s)	521, 589, 704, 852
Tru1I	TTAA	4 cut(s)	201, 336, 966, 984
Tru9I	TTAA	4 cut(s)	201, 336, 966, 984
TscAI	CASTG	2 cut(s)	396, 810
TseFI	GTSAC	3 cut(s)	65, 362, 385
TseI	GCWGC	4 cut(s)	419, 446, 449, 1019
Tsp45I	GTSAC	3 cut(s)	65, 362, 385
TspDTI	ATGAA	7 cut(s)	50, 87, 93, 309, 333, 510, 1068
TspRI	CASTG	2 cut(s)	396, 810
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	2 cut(s)	658, 1019
XmnI	GAANNNNTTC	1 cut(s)	812
XspI	CTAG	2 cut(s)	207, 414
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.