Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013834

Physical Location & Seq

Genomic Coordinates Reverse (-)

17017312 .. 17019663

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTGAGTACCCCTACTCATCAAATTTCTTCACAGGTCTCTTCAAATTCAACCCTCTTCTTCATCCTCATCATCGTGAACACCCTTTGATTTCAAACCCTCATCCACCTCCACCTCCACCTCCGCAACCACTACCACTACCTCAACCTCCATATGCTCACAACTTCTTCAATATCAGCTACAATCAGAACCATAACCTGTACTCTTCTTCTTACTCCACCCAAACCACTCATCATCAACCCCCTTCTCCACCTCTCAGAGAAGCCCTCCCACTCCTTAACCGCTTAAGCCCAACAAAGCATCATCAAGACCAAGAACATGAGCATCACCACCATCATGAGTACTACTCCTGTAGTACTGATCAAATGGATGTAGATGACAAGATCAGCAAACTGCACGACAAAGAAGACCATGAGGAAGAGGATGAAACTAGTGTGACTGTTGCACTACACATAGGACTCCCGAGCCCTAGTGCAGCTGAAATGGCATCTGTGCTTTCTGCAGCTTCTTCTTCCTCAGAGATCAGCACAACTCATGACAAAGATCTTATTGGAGATCATGGTGATGATTCAACTGGGTACCCCATGAACAGATCATCGCTCAACAAGGGTCAGTATTGGATCCCAACTCCTTCACAGATTCTCATCGGTCCAACTCAATTCTCTTGCCCTGTCTGCTACAAGACCTTTAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCCGAGTCACTAAGAGGAACTCAACCAACAGGCATGCTTAGGCTTCCTTGCTATTGTTGCACACCAGGCTGCAGGAACAACATCGATCACCCGAGAGCGAAGCCACTGAAGGACTTTAGAACCCTCCAAACACATTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGAAAATGTGGCAAGGCATTTGCAGTGAGAGGAGATTGGAGAACCCACGAGAAGAATTGCGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGGTCTCTCAAAGATCATATCAAGGCCTTTGGGAATGGGCATGCAGCTTATGGAATAGATGGATTTGAAGAAGATGATGAGCCTGCATCTGAAGTTGAGCAAGATAATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

380

Amino Acids

43.23

Weight (kDa)

6.67

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	267 - 301	1.3e-18	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	304 - 328	7.7e-12	BIRD-IDD transcription factor, third C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57670
fragaria_vesca	FvH4_6g23170
malus_domestica	MD12G1066400.v1.1 MD14G1066100.v1.1
prunus_persica	Prupe.7G067900_v2.0.a1
pyrus_communis	pycom12g05780 pycom14g05390
rosa_chinensis	RchiOBHm_Chr3g0481001
rosa_laevigata	RLG00000023434
rosa_multiflora	Rmu_sc0002927.1_g000032
rosa_roxburghii	Rroxscaffold_6G00400760
rosa_rugosa	Rorug03G0188900
rosa_samantha	Rh3AG239600 Rh3BG274600 Rh3CG270100 Rh3DG266200
rosa_wichuraiana	Rw0G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AciI	CCGC	3 cut(s)	125, 283, 981
AclWI	GGATC	3 cut(s)	616, 629, 739
AcsI	RAATTY	2 cut(s)	25, 47
AcuI	CTGAAG	2 cut(s)	878, 1137
AfaI	GTAC	5 cut(s)	11, 203, 344, 358, 581
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	6 cut(s)	46, 52, 96, 172, 573, 1094
AhlI	ACTAGT	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	5 cut(s)	180, 479, 506, 988, 1073
AluI	AGCT	5 cut(s)	180, 479, 506, 988, 1073
Alw26I	GTCTC	2 cut(s)	44, 1035
AlwI	GGATC	3 cut(s)	616, 629, 739
Ama87I	CYCGRG	3 cut(s)	463, 752, 841
AoxI	GGCC	2 cut(s)	749, 1050
ApaI	GGGCCC	1 cut(s)	753
ApeKI	GCWGC	4 cut(s)	476, 503, 819, 1070
ApoI	RAATTY	2 cut(s)	25, 47
Asp718I	GGTACC	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	650, 749, 750
AsuHPI	GGTGA	3 cut(s)	320, 575, 830
AvaI	CYCGRG	3 cut(s)	463, 752, 841
AvaII	GGWCC	1 cut(s)	650
BaeGI	GKGCMC	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	470, 753
BauI	CACGAG	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	488, 515, 806, 1082
BccI	CCATC	2 cut(s)	342, 1079
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	44, 1035
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	2 cut(s)	432, 471
BfmI	CTRYAG	3 cut(s)	352, 501, 820
BfrI	CTTAAG	1 cut(s)	286
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	4 cut(s)	477, 504, 820, 1071
BlsI	GCNGC	4 cut(s)	478, 505, 821, 1072
BmcAI	AGTACT	2 cut(s)	344, 358
Bme1390I	CCNGG	1 cut(s)	816
Bme18I	GGWCC	1 cut(s)	650
BmeT110I	CYCGRG	3 cut(s)	463, 752, 841
BmgT120I	GGNCC	3 cut(s)	650, 749, 750
BmiI	GGNNCC	3 cut(s)	581, 623, 751
BmrFI	CCNGG	1 cut(s)	816
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	5 cut(s)	310, 334, 497, 702, 1121
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	414
BplI	GAGNNNNNCTC	4 cut(s)	252, 284, 332, 364
Bpu10I	CCTNAGC	1 cut(s)	788
Bsa29I	ATCGAT	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	44, 1035
Bse1I	ACTGG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	644
BseBI	CCWGG	1 cut(s)	816
BseCI	ATCGAT	1 cut(s)	834
BseGI	GGATG	4 cut(s)	64, 103, 376, 430
BseJI	GATNNNNATC	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	271, 531
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	966
BseSI	GKGCMC	1 cut(s)	753
BseXI	GCAGC	4 cut(s)	488, 515, 806, 1082
BsgI	GTGCAG	3 cut(s)	380, 495, 940
BshFI	GGCC	2 cut(s)	751, 1052
BshNI	GGYRCC	1 cut(s)	579
BshVI	ATCGAT	1 cut(s)	834
BsiHKCI	CYCGRG	3 cut(s)	463, 752, 841
BsmAI	GTCTC	2 cut(s)	44, 1035
BsnI	GGCC	2 cut(s)	751, 1052
Bso31I	GGTCTC	2 cut(s)	44, 1035
BsoBI	CYCGRG	3 cut(s)	463, 752, 841
Bsp120I	GGGCCC	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	470, 753
BspACI	CCGC	3 cut(s)	125, 283, 981
BspANI	GGCC	2 cut(s)	751, 1052
BspCNI	CTCAG	2 cut(s)	270, 530
BspDI	ATCGAT	1 cut(s)	834
BspHI	TCATGA	2 cut(s)	337, 535
BspLI	GGNNCC	3 cut(s)	581, 623, 751
BspMAI	CTGCAG	2 cut(s)	505, 824
BspPI	GGATC	3 cut(s)	616, 629, 739
BspT107I	GGYRCC	1 cut(s)	579
BspTI	CTTAAG	1 cut(s)	286
BspTNI	GGTCTC	2 cut(s)	44, 1035
BsrI	ACTGG	1 cut(s)	580
BssSI	CACGAG	1 cut(s)	968
Bst2BI	CACGAG	1 cut(s)	968
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	4 cut(s)	47, 63, 211, 414
BstAFI	CTTAAG	1 cut(s)	286
BstC8I	GCNNGC	3 cut(s)	785, 1068, 1110
BstDEI	CTNAG	5 cut(s)	6, 257, 517, 761, 788
BstF5I	GGATG	4 cut(s)	64, 103, 376, 430
BstMAI	GTCTC	2 cut(s)	44, 1035
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 675, 807, 816, 1005
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	3 cut(s)	709, 787, 1070
BstSCI	CCNGG	1 cut(s)	814
BstSFI	CTRYAG	3 cut(s)	352, 501, 820
BstSLI	GKGCMC	1 cut(s)	753
BstV1I	GCAGC	4 cut(s)	488, 515, 806, 1082
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	3 cut(s)	544, 621, 731
BstYI	RGATCY	3 cut(s)	544, 621, 731
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	751, 1052
BsuTUI	ATCGAT	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	582
BtsCI	GGATG	4 cut(s)	64, 103, 376, 430
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	2 cut(s)	854, 951
Cac8I	GCNNGC	3 cut(s)	785, 1068, 1110
CciI	TCATGA	2 cut(s)	337, 535
Cfr13I	GGNCC	3 cut(s)	650, 749, 750
ClaI	ATCGAT	1 cut(s)	834
Csp6I	GTAC	5 cut(s)	10, 202, 343, 357, 580
CviQI	GTAC	5 cut(s)	10, 202, 343, 357, 580
DdeI	CTNAG	5 cut(s)	6, 257, 517, 761, 788
Eam1104I	CTCTTC	4 cut(s)	47, 63, 211, 414
EarI	CTCTTC	4 cut(s)	47, 63, 211, 414
Eco147I	AGGCCT	1 cut(s)	1052
Eco24I	GRGCYC	2 cut(s)	470, 753
Eco31I	GGTCTC	2 cut(s)	44, 1035
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	878, 1137
Eco88I	CYCGRG	3 cut(s)	463, 752, 841
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	814
EcoT22I	ATGCAT	1 cut(s)	717
EcoT38I	GRGCYC	2 cut(s)	470, 753
FauI	CCCGC	1 cut(s)	974
FauNDI	CATATG	2 cut(s)	154, 717
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	477, 504, 820, 1071
FokI	GGATG	4 cut(s)	51, 90, 383, 437
FriOI	GRGCYC	2 cut(s)	470, 753
Fsp4HI	GCNGC	4 cut(s)	477, 504, 820, 1071
FspBI	CTAG	2 cut(s)	432, 471
GluI	GCNGC	4 cut(s)	477, 504, 820, 1071
HaeIII	GGCC	2 cut(s)	751, 1052
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	5 cut(s)	459, 569, 640, 755, 903
HphI	GGTGA	3 cut(s)	320, 575, 830
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	5 cut(s)	189, 260, 520, 1012, 1117
Hpy188III	TCNNGA	5 cut(s)	77, 308, 338, 463, 536
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	255, 642, 853
HpyCH4III	ACNGT	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 675, 807, 816, 1005
HpyF3I	CTNAG	5 cut(s)	6, 257, 517, 761, 788
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	361
Lsp1109I	GCAGC	4 cut(s)	488, 515, 806, 1082
LweI	GCATC	5 cut(s)	310, 334, 497, 702, 1121
MaeI	CTAG	2 cut(s)	432, 471
MaeIII	GTNAC	2 cut(s)	436, 756
MflI	RGATCY	3 cut(s)	544, 621, 731
MhlI	GDGCHC	2 cut(s)	470, 753
MluCI	AATT	4 cut(s)	25, 47, 659, 976
MlyI	GAGTC	2 cut(s)	453, 764
MmeI	TCCRAC	1 cut(s)	677
Mph1103I	ATGCAT	1 cut(s)	717
MseI	TTAA	5 cut(s)	279, 287, 690, 1017, 1138
MslI	CAYNNNNRTG	4 cut(s)	75, 336, 564, 710
MspA1I	CMGCKG	1 cut(s)	479
MspCI	CTTAAG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	5 cut(s)	485, 675, 807, 816, 1005
NdeI	CATATG	2 cut(s)	154, 717
NlaIV	GGNNCC	3 cut(s)	581, 623, 751
NmuCI	GTSAC	2 cut(s)	436, 756
NsiI	ATGCAT	1 cut(s)	717
NspI	RCATGY	3 cut(s)	709, 787, 1070
PaeI	GCATGC	2 cut(s)	787, 1070
PagI	TCATGA	2 cut(s)	337, 535
PceI	AGGCCT	1 cut(s)	1052
PfeI	GAWTC	3 cut(s)	569, 640, 903
PkrI	GCNGC	4 cut(s)	478, 505, 821, 1072
PleI	GAGTC	2 cut(s)	453, 763
PpsI	GAGTC	2 cut(s)	453, 763
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	581, 623, 751
PspOMI	GGGCCC	1 cut(s)	749
PspPI	GGNCC	3 cut(s)	650, 749, 750
PstI	CTGCAG	2 cut(s)	505, 824
PsuI	RGATCY	3 cut(s)	544, 621, 731
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	5 cut(s)	11, 203, 344, 358, 581
RsaNI	GTAC	5 cut(s)	10, 202, 343, 357, 580
RseI	CAYNNNNRTG	4 cut(s)	75, 336, 564, 710
SaqAI	TTAA	5 cut(s)	279, 287, 690, 1017, 1138
SatI	GCNGC	4 cut(s)	477, 504, 820, 1071
Sau96I	GGNCC	3 cut(s)	650, 749, 750
ScaI	AGTACT	2 cut(s)	344, 358
SchI	GAGTC	2 cut(s)	453, 764
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	2 cut(s)	470, 753
SfaNI	GCATC	5 cut(s)	310, 334, 497, 702, 1121
SfcI	CTRYAG	3 cut(s)	352, 501, 820
SinI	GGWCC	1 cut(s)	650
SmiMI	CAYNNNNRTG	4 cut(s)	75, 336, 564, 710
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
SpeI	ACTAGT	1 cut(s)	431
SphI	GCATGC	2 cut(s)	787, 1070
Sse9I	AATT	4 cut(s)	25, 47, 659, 976
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	3 cut(s)	125, 283, 981
SspMI	CTAG	2 cut(s)	432, 471
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	1 cut(s)	814
TaaI	ACNGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	834
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	4 cut(s)	25, 47, 659, 976
TatI	WGTACW	3 cut(s)	201, 342, 356
TfiI	GAWTC	3 cut(s)	569, 640, 903
Tru1I	TTAA	5 cut(s)	279, 287, 690, 1017, 1138
Tru9I	TTAA	5 cut(s)	279, 287, 690, 1017, 1138
TscAI	CASTG	2 cut(s)	861, 951
TseFI	GTSAC	2 cut(s)	436, 756
TseI	GCWGC	4 cut(s)	476, 503, 819, 1070
Tsp45I	GTSAC	2 cut(s)	436, 756
TspDTI	ATGAA	4 cut(s)	53, 441, 602, 904
TspRI	CASTG	2 cut(s)	861, 951
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	650
XapI	RAATTY	2 cut(s)	25, 47
XceI	RCATGY	3 cut(s)	709, 787, 1070
XspI	CTAG	2 cut(s)	432, 471
ZrmI	AGTACT	2 cut(s)	344, 358
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.