AT3G57680

peptidase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21380648 .. 21383807
3160 bp
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UTR
Exon/CDS
Intron
AT3G57680.3

Sequence Viewer

Length: 1560 bp
ATGGAAAAAGTTGTAACCCTAAATCATGATCTACCTCTGTTACACTTCCCGAATTCTCGGAAACCCTTTTCGATTCCATCTCCGATTCTTCGGATTTCGAGCTTCAAGCGTCATAAGAAACGTTCTTGTCTTGCATCGTCTTCGCGTCTAGGGTTCTATACAGAGACCAAGACCGTTTCAGAGAGCCATGGTGTGATAGTTGACAACAGTACCATCGGAAGAAGATTGCTTGGTTTAGCCGCAGCCGTTTCAGTAGCGGTTTCTTTGTCGATCTTTTGTGATTCCCCGGCACTAGCTGAGTCTCTAACGATCGCTTTCCCTGTTTCACGTGCTCGTGAGGTTACTACAGTACAGAGAACTCTTGTGGAAGCTTGGGGTTTGATTAGAGAAACATTTGTTGATCCAACTTTTAATCATCAAGATTGGGATTTTAAGTTGCAACAGACGATGGTGGAAATGTTTCCTCTAAGATCAGCAGATGCTGCTTATGGAAAGCTCAAAGCTATGCTCTCTACGCTTGGTGATCCCTTTACTCGACTCATTACCCCAAAGGAGTACCAAAGTTTCAGAATTGGCAGCGATGGAAATCTCCAAGGTGTTGGCCTTTTCATAAACTCAGAACCAAGAACAGGTCACCTGGTTGTTATGTCTTGCGTAGAAGGTAGCCCGGCAGATCGTGCTGGTATACATGAAGGCGAGGAGTTAGTCGAGATAAATGGTGAGAAATTAGATGATGTTGATAGTGAAGCAGCAGCACAGAAGCTGAGAGGCCGAGTTGGAACATTTGTTACCATAAAACTTAAAAATGTGAATGGATCAGGGACAGATTCTGGTATTAGAGAGGTCAAGTTACCTCGAGATTACATTAAGCTATCTCCAATATCCAGTGCTATAATCCCACATACAACACCTGATGGACGTTTAGCGAAGACAGGTTATGTCAAACTCACAGCGTTTTCACAGACTGCAGCGTCCGATATGGAAAATGCGGTGCACGAGATGGAGAATCAGGATGTTCAGTCATACATTCTAGACCTAAGGAACAATCCGGGAGGTCTGGTTAGAGCTGGTCTTGATGTTGCACAATTATGGCTTGACGGAGATGAGACTCTTGTGTATACAATCGATCGAGAAGGGGTTACATCACCGATCAACATGATCAATGGACACGCTGTGACACATGATCCACTTGTTGTGCTTGTGAATGAAGGAAGTGCTAGTGCAAGTGAAATTTTGGCAGGTGCTTTACACGATAATGGTCGAGCTATACTTGTCGGTAACCGGACATTTGGGAAAGGGAAAATTCAAAGCATAACAGAGCTAAACGATGGGTCGGCTTTGTTTGTGACGGTGGCTAAGTATTTGTCTCCGTCTTTACACGAAATTGATCAAGTAGGGATTGCACCTGATGTACAGTGTACCACAGGTATGATCGATTCTTTGACCGCTGAGATAGTTGAGAAGATGAACAGTTCGGTTCCATTGCTTGAAGCAGACTCATGTGTTATGGTCGCTGAGCACGAACTTGAGGCTCGACGATCTAATGGAACAGCTTCTTGA

Protein Analysis

519

Amino Acids

56.2

Weight (kDa)

5.59

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 48 - 117 2.1e-08 PDZ domain
PDZ_6 PF17820 65 - 119 2.7e-08 PDZ domain
Peptidase_S41 PF03572 161 - 323 6.1e-54 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1229
AasI GACNNNNNNGTC 1 cut(s) 970
Acc36I ACCTGC 1 cut(s) 1229
AccI GTMKAC 2 cut(s) 685, 1118
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 240, 257, 989, 1446
AclI AACGTT 1 cut(s) 121
AclWI GGATC 4 cut(s) 395, 518, 823, 1178
AcsI RAATTY 3 cut(s) 52, 1230, 1302
AcvI CACGTG 1 cut(s) 329
AdeI CACNNNGTG 1 cut(s) 1174
AfaI GTAC 5 cut(s) 211, 351, 557, 1413, 1420
AfiI CCNNNNNNNGG 1 cut(s) 629
AgsI TTSAA 3 cut(s) 106, 1307, 1490
AjnI CCWGG 1 cut(s) 636
Alw21I GWGCWC 3 cut(s) 334, 996, 1521
Alw26I GTCTC 4 cut(s) 158, 306, 1100, 1371
Alw44I GTGCAC 1 cut(s) 992
AlwI GGATC 4 cut(s) 395, 518, 823, 1178
AlwNI CAGNNNCTG 3 cut(s) 482, 763, 830
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 2 cut(s) 601, 769
ApaLI GTGCAC 1 cut(s) 992
ApeKI GCWGC 6 cut(s) 242, 482, 576, 749, 752, 968
ApoI RAATTY 3 cut(s) 52, 1230, 1302
Asp700I GAANNNNTTC 2 cut(s) 459, 1552
AsuC2I CCSGG 3 cut(s) 287, 668, 1050
AsuHPI GGTGA 4 cut(s) 533, 626, 731, 1137
AvaI CYCGRG 1 cut(s) 855
AxyI CCTNAGG 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 996
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BauI CACGAG 2 cut(s) 333, 995
BbrPI CACGTG 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 132, 935
Bbv12I GWGCWC 3 cut(s) 334, 996, 1521
BbvI GCAGC 6 cut(s) 254, 469, 588, 761, 764, 980
BccI CCATC 7 cut(s) 85, 221, 442, 575, 908, 994, 1322
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 638
BclI TGATCA 2 cut(s) 1158, 1387
BcnI CCSGG 3 cut(s) 287, 668, 1050
BcoDI GTCTC 4 cut(s) 158, 306, 1100, 1371
BfaI CTAG 4 cut(s) 149, 293, 1031, 1218
BfmI CTRYAG 2 cut(s) 345, 966
BfuAI ACCTGC 1 cut(s) 1229
BisI GCNGC 7 cut(s) 240, 243, 483, 577, 750, 753, 969
BlpI GCTNAGC 1 cut(s) 1515
BlsI GCNGC 7 cut(s) 241, 244, 484, 578, 751, 754, 970
Bme1390I CCNGG 4 cut(s) 287, 638, 668, 1050
BmeT110I CYCGRG 1 cut(s) 855
BmiI GGNNCC 1 cut(s) 1479
BmrFI CCNGG 4 cut(s) 287, 638, 668, 1050
BmsI GCATC 2 cut(s) 143, 469
BpiI GAAGAC 2 cut(s) 132, 935
Bpu1102I GCTNAGC 1 cut(s) 1515
BpuEI CTTGAG 1 cut(s) 1547
BpuMI CCSGG 3 cut(s) 287, 668, 1050
Bsa29I ATCGAT 2 cut(s) 1125, 1434
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 3 cut(s) 187, 285, 592
BsaWI WCCGGW 1 cut(s) 1281
BsaXI ACNNNNNCTCC 2 cut(s) 1044, 1074
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 885
Bse21I CCTNAGG 1 cut(s) 1037
Bse3DI GCAATG 1 cut(s) 1481
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 1 cut(s) 638
BseCI ATCGAT 2 cut(s) 1125, 1434
BseDI CCNNGG 3 cut(s) 187, 285, 592
BseGI GGATG 1 cut(s) 1018
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMI GCAATG 1 cut(s) 1481
BseMII CTCAG 5 cut(s) 288, 630, 755, 1440, 1506
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 996
BseXI GCAGC 6 cut(s) 254, 469, 588, 761, 764, 980
Bsh1236I CGCG 1 cut(s) 145
Bsh1285I CGRYCG 2 cut(s) 312, 1129
BshFI GGCC 2 cut(s) 603, 771
BshVI ATCGAT 2 cut(s) 1125, 1434
BsiEI CGRYCG 2 cut(s) 312, 1129
BsiHKAI GWGCWC 3 cut(s) 334, 996, 1521
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 4 cut(s) 287, 668, 1049, 1282
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 4 cut(s) 158, 306, 1100, 1371
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 2 cut(s) 603, 771
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 3 cut(s) 334, 996, 1521
Bsp1407I TGTACA 1 cut(s) 1411
Bsp1720I GCTNAGC 1 cut(s) 1515
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 4 cut(s) 240, 257, 989, 1446
BspANI GGCC 2 cut(s) 603, 771
BspCNI CTCAG 5 cut(s) 289, 629, 756, 1441, 1507
BspDI ATCGAT 2 cut(s) 1125, 1434
BspFNI CGCG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 1479
BspMAI CTGCAG 1 cut(s) 970
BspMI ACCTGC 1 cut(s) 1229
BspPI GGATC 4 cut(s) 395, 518, 823, 1178
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 1481
BsrGI TGTACA 1 cut(s) 1411
BsrI ACTGG 1 cut(s) 885
BssECI CCNNGG 3 cut(s) 187, 285, 592
BssNAI GTATAC 2 cut(s) 686, 1119
BssSI CACGAG 2 cut(s) 333, 995
BssT1I CCWWGG 2 cut(s) 187, 592
Bst1107I GTATAC 2 cut(s) 686, 1119
Bst2BI CACGAG 2 cut(s) 333, 995
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 6 cut(s) 175, 209, 349, 1351, 1416, 1472
BstAPI GCANNNNNTGC 2 cut(s) 482, 677
BstAUI TGTACA 1 cut(s) 1411
BstBAI YACGTR 1 cut(s) 329
BstDEI CTNAG 8 cut(s) 297, 467, 616, 764, 1037, 1356, 1449, 1515
BstDSI CCRYGG 1 cut(s) 187
BstEII GGTNACC 2 cut(s) 632, 1277
BstF5I GGATG 1 cut(s) 1018
BstFNI CGCG 1 cut(s) 145
BstMAI GTCTC 4 cut(s) 158, 306, 1100, 1371
BstMCI CGRYCG 2 cut(s) 312, 1129
BstMWI GCNNNNNNNGC 3 cut(s) 482, 514, 677
BstNI CCWGG 1 cut(s) 638
BstPI GGTNACC 2 cut(s) 632, 1277
BstSCI CCNGG 4 cut(s) 285, 636, 666, 1048
BstSFI CTRYAG 2 cut(s) 345, 966
BstSLI GKGCMC 1 cut(s) 996
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 6 cut(s) 254, 469, 588, 761, 764, 980
BstV2I GAAGAC 2 cut(s) 132, 935
BstXI CCANNNNNNTGG 1 cut(s) 599
BstZ17I GTATAC 2 cut(s) 686, 1119
Bsu15I ATCGAT 2 cut(s) 1125, 1434
Bsu36I CCTNAGG 1 cut(s) 1037
BsuRI GGCC 2 cut(s) 603, 771
BsuTUI ATCGAT 2 cut(s) 1125, 1434
BtgI CCRYGG 1 cut(s) 187
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 1018
BtsIMutI CAGTG 2 cut(s) 892, 1421
BveI ACCTGC 1 cut(s) 1229
CaiI CAGNNNCTG 3 cut(s) 482, 763, 830
CciI TCATGA 1 cut(s) 25
ClaI ATCGAT 2 cut(s) 1125, 1434
CseI GACGC 3 cut(s) 98, 134, 960
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 5 cut(s) 210, 350, 556, 1412, 1419
CviAII CATG 6 cut(s) 26, 188, 689, 1156, 1181, 1500
CviQI GTAC 5 cut(s) 210, 350, 556, 1412, 1419
DdeI CTNAG 8 cut(s) 297, 467, 616, 764, 1037, 1356, 1449, 1515
DraIII CACNNNGTG 1 cut(s) 1174
DrdI GACNNNNNNGTC 1 cut(s) 970
DseDI GACNNNNNNGTC 1 cut(s) 970
Eco130I CCWWGG 2 cut(s) 187, 592
Eco31I GGTCTC 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 1037
Eco88I CYCGRG 1 cut(s) 855
Eco91I GGTNACC 2 cut(s) 632, 1277
EcoO65I GGTNACC 2 cut(s) 632, 1277
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 636
EcoT14I CCWWGG 2 cut(s) 187, 592
ErhI CCWWGG 2 cut(s) 187, 592
FaeI CATG 6 cut(s) 29, 191, 692, 1159, 1184, 1503
FaqI GGGAC 1 cut(s) 835
FatI CATG 6 cut(s) 25, 187, 688, 1155, 1180, 1499
FbaI TGATCA 2 cut(s) 1158, 1387
FblI GTMKAC 2 cut(s) 685, 1118
Fnu4HI GCNGC 7 cut(s) 240, 243, 483, 577, 750, 753, 969
FokI GGATG 1 cut(s) 1025
Fsp4HI GCNGC 7 cut(s) 240, 243, 483, 577, 750, 753, 969
FspBI CTAG 4 cut(s) 149, 293, 1031, 1218
GluI GCNGC 7 cut(s) 240, 243, 483, 577, 750, 753, 969
HaeIII GGCC 2 cut(s) 603, 771
HapII CCGG 4 cut(s) 287, 668, 1049, 1282
HgaI GACGC 3 cut(s) 98, 134, 960
Hin1II CATG 6 cut(s) 29, 191, 692, 1159, 1184, 1503
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 4 cut(s) 287, 668, 1049, 1282
HphI GGTGA 4 cut(s) 533, 626, 731, 1137
Hpy166II GTNNAC 5 cut(s) 202, 686, 994, 1119, 1419
Hpy188I TCNGA 8 cut(s) 60, 84, 93, 181, 218, 569, 619, 976
Hpy8I GTNNAC 5 cut(s) 202, 686, 994, 1119, 1419
Hpy99I CGWCG 1 cut(s) 1539
HpyAV CCTTC 4 cut(s) 653, 686, 1127, 1202
HpyCH4III ACNGT 6 cut(s) 175, 209, 349, 1351, 1416, 1472
HpyCH4IV ACGT 3 cut(s) 121, 328, 919
HpyCH4V TGCA 7 cut(s) 134, 439, 968, 994, 1082, 1223, 1403
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 514, 677
HpyF3I CTNAG 8 cut(s) 297, 467, 616, 764, 1037, 1356, 1449, 1515
HpySE526I ACGT 3 cut(s) 121, 328, 919
Hsp92II CATG 6 cut(s) 29, 191, 692, 1159, 1184, 1503
Ksp22I TGATCA 2 cut(s) 1158, 1387
Lsp1109I GCAGC 6 cut(s) 254, 469, 588, 761, 764, 980
LweI GCATC 2 cut(s) 143, 469
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 4 cut(s) 149, 293, 1031, 1218
MaeII ACGT 3 cut(s) 121, 328, 919
MboII GAAGA 6 cut(s) 80, 132, 231, 234, 940, 1474
MhlI GDGCHC 3 cut(s) 334, 996, 1521
MluCI AATT 7 cut(s) 52, 570, 725, 1085, 1230, 1302, 1383
MlyI GAGTC 4 cut(s) 308, 531, 1102, 1490
MmeI TCCRAC 2 cut(s) 428, 757
MnlI CCTC 9 cut(s) 45, 331, 474, 691, 761, 835, 864, 1046, 1522
MroXI GAANNNNTTC 2 cut(s) 459, 1552
MseI TTAA 4 cut(s) 411, 432, 801, 867
MslI CAYNNNNRTG 3 cut(s) 1087, 1254, 1427
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 4 cut(s) 287, 668, 1049, 1282
MspR9I CCNGG 4 cut(s) 287, 638, 668, 1050
MvaI CCWGG 1 cut(s) 638
MvnI CGCG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 482, 514, 677
NciI CCSGG 3 cut(s) 287, 668, 1050
NcoI CCATGG 1 cut(s) 187
NlaIII CATG 6 cut(s) 29, 191, 692, 1159, 1184, 1503
NlaIV GGNNCC 1 cut(s) 1479
NmeAIII GCCGAG 1 cut(s) 797
NmuCI GTSAC 3 cut(s) 632, 1174, 1345
PaeR7I CTCGAG 1 cut(s) 855
PagI TCATGA 1 cut(s) 25
PaqCI CACCTGC 1 cut(s) 1229
PcsI WCGNNNNNNNCGW 1 cut(s) 1518
PdmI GAANNNNTTC 2 cut(s) 459, 1552
PfeI GAWTC 6 cut(s) 73, 85, 281, 827, 1006, 1436
PfoI TCCNGGA 1 cut(s) 1048
PkrI GCNGC 7 cut(s) 241, 244, 484, 578, 751, 754, 970
Ple19I CGATCG 2 cut(s) 312, 1129
PleI GAGTC 4 cut(s) 307, 531, 1102, 1490
PmaCI CACGTG 1 cut(s) 329
PmlI CACGTG 1 cut(s) 329
PpsI GAGTC 4 cut(s) 307, 531, 1102, 1490
Ppu21I YACGTR 1 cut(s) 329
Psp1406I AACGTT 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 636
PspCI CACGTG 1 cut(s) 329
PspEI GGTNACC 2 cut(s) 632, 1277
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 1 cut(s) 1479
PsrI GAACNNNNNNTAC 2 cut(s) 772, 804
PstI CTGCAG 1 cut(s) 970
PstNI CAGNNNCTG 3 cut(s) 482, 763, 830
PvuI CGATCG 2 cut(s) 312, 1129
RsaI GTAC 5 cut(s) 211, 351, 557, 1413, 1420
RsaNI GTAC 5 cut(s) 210, 350, 556, 1412, 1419
RseI CAYNNNNRTG 3 cut(s) 1087, 1254, 1427
SaqAI TTAA 4 cut(s) 411, 432, 801, 867
SatI GCNGC 7 cut(s) 240, 243, 483, 577, 750, 753, 969
SchI GAGTC 4 cut(s) 308, 531, 1102, 1490
ScrFI CCNGG 4 cut(s) 287, 638, 668, 1050
SduI GDGCHC 3 cut(s) 334, 996, 1521
SexAI ACCWGGT 1 cut(s) 636
SfaNI GCATC 2 cut(s) 143, 469
SfcI CTRYAG 2 cut(s) 345, 966
Sfr274I CTCGAG 1 cut(s) 855
SlaI CTCGAG 1 cut(s) 855
SmiMI CAYNNNNRTG 3 cut(s) 1087, 1254, 1427
SmlI CTYRAG 2 cut(s) 855, 1526
SmoI CTYRAG 2 cut(s) 855, 1526
Sse9I AATT 7 cut(s) 52, 570, 725, 1085, 1230, 1302, 1383
SsiI CCGC 4 cut(s) 240, 257, 989, 1446
SspMI CTAG 4 cut(s) 149, 293, 1031, 1218
StyD4I CCNGG 4 cut(s) 285, 636, 666, 1048
StyI CCWWGG 2 cut(s) 187, 592
TaaI ACNGT 6 cut(s) 175, 209, 349, 1351, 1416, 1472
TaiI ACGT 3 cut(s) 124, 331, 922
TasI AATT 7 cut(s) 52, 570, 725, 1085, 1230, 1302, 1383
TatI WGTACW 2 cut(s) 349, 1411
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 6 cut(s) 73, 85, 281, 827, 1006, 1436
Tru1I TTAA 4 cut(s) 411, 432, 801, 867
Tru9I TTAA 4 cut(s) 411, 432, 801, 867
TscAI CASTG 2 cut(s) 892, 1421
TseFI GTSAC 3 cut(s) 632, 1174, 1345
TseI GCWGC 6 cut(s) 242, 482, 576, 749, 752, 968
Tsp45I GTSAC 3 cut(s) 632, 1174, 1345
TspDTI ATGAA 4 cut(s) 598, 705, 1221, 1481
TspGWI ACGGA 2 cut(s) 1113, 1359
TspRI CASTG 2 cut(s) 892, 1421
VneI GTGCAC 1 cut(s) 992
XapI RAATTY 3 cut(s) 52, 1230, 1302
XbaI TCTAGA 1 cut(s) 1030
XhoI CTCGAG 1 cut(s) 855
XmiI GTMKAC 2 cut(s) 685, 1118
XmnI GAANNNNTTC 2 cut(s) 459, 1552
XspI CTAG 4 cut(s) 149, 293, 1031, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.