RLG00000023435

tail specific protease

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
23736993 .. 23741582
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023435

Sequence Viewer

Length: 1539 bp
ATGGAGCCTCTTTGCCCAAACTTGGATCTCAAACCAACACCTTGCTCACCAATTTCGGCCAGATTCCCAAAACCCACCTCACTTTTACTGCCCCCTTATCGGTTTTCATGCTCGGATCGTAGTGTGAGCAGGAAATGGAGAGTCAGTGCTGCAAAGTCTGAAGCTCATGAAAACTCTAGTCAGGAACTCTTTGGGTCCATTAGAAAAGGCTTTCTTGCGTTTTCTGTTGCCGCTGCTGCCAGTTTTTCGCTCTGTTTCGATTCTCCGGCGATGGCAGAGTCGTTGACCGTTGCTTTTCCGATTTCACGCACTACTGAGGTGAACTCAGTACAAAGAACTCTTGTGGAGGCTTGGGGTTTAATTAGAGAAACATTCGTAGACCCAACATTTAATCATCAAGATTGGGATCTTAAGTTGCAGCAAACAATGGTCGAAATGTTTCCCCTTAGGTCAGCGGATGCAGCTTATATGAAGATCAGTGGAATGCTTTCTACTCTTGGTGATCCCTTTACAAAGATTATTAGTCCAAAGGAATATCAAAGTTTTCGAATTGGAAGCAATGGAAATCTACAAGGAGTTGGCCTTTTCATAGGTACTGAACCAAGAACAGGTCATCTGGTTGTTATGTCTTGTGTAGACGGTAGCCCAGCTGCTCGTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTAACGGTGAGAAGTTTAATGGTGTTGATACTGAAGCAGCAGTACAGAAGCTTAGAGGCCGAGTTGGAACAACTGTTACAGTAAAAGTTCACAGTGGCAATGATTTGGGAAGTGATGCTAGTATAAGAGAGGTGAAATTACCTCGGGAGTTCATTAGGGTTTCCCCAATTTCAACTGCAACCATCCCTCATAGAACCCCAGATGGACATTTAACAAAGACGGGTTATGTGAAGCTGTCAGCCTTCTCTCAGACTGCTGCAGCTGATATGGAAAATGCTATCAAGGAAATGAAGAGTCAGGGTGTGCATTCATACATACTGGATTTGAGGAACAATCCGGGGGGACTGGTGAAAGCTGGACTTGATGTTGCCCAAATTTGGCTAGACGGGGATGAAACTCTAGTCAACACTGTTGATCGGGAAGGGAACTTGTTACCAATTAATATGGTAGATGGGCATGCTATCACACATGATCCACTTGTTGTGCTTGTCAATGAGGGCAGCGCAAGTGCAAGTGAAATCTTGGCAGGGGCACTGCATGACAATCGTCGAGCTACTCTTGTGGGTCACAGAACCTTTGGGAAAGGAAAAATTCAGAGTGTCACAGAGCTGCATGATGGATCGGCCTTATTTGTCACGGTGGCAAAGTATTTATCGCCAGCGCTTCATGACATAGACCAGGTTGGCATAGCTCCTGATGTGCAATGCACAACTGAAATGCTCAATTCTCCAAAGGATTCAGTGTTGAAGGAGCAGAAGAGCTCAGTATCGTCTCTAGAAGCAGATTCCTGTGTTTTGGTAGCAGAACATGAATTGGACATTCAAGAGTCCAAAGGCACTGCTTCTTGA

Protein Analysis

513

Amino Acids

55.26

Weight (kDa)

5.71

Isoelectric Point (pI)

33.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 193 - 260 1.4e-10 PDZ domain
PDZ_2 PF13180 197 - 264 5.2e-08 PDZ domain
PDZ_6 PF17820 208 - 260 1.5e-09 PDZ domain
Peptidase_S41 PF03572 303 - 465 8.8e-51 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 378, 636
AciI CCGC 2 cut(s) 231, 455
AclWI GGATC 6 cut(s) 33, 123, 414, 497, 1157, 1318
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 1065, 1281
AcuI CTGAAG 2 cut(s) 180, 744
AfaI GTAC 3 cut(s) 330, 595, 735
AfeI AGCGCT 1 cut(s) 1353
AfiI CCNNNNNNNGG 4 cut(s) 22, 99, 608, 1068
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 4 cut(s) 689, 864, 1438, 1514
AjnI CCWGG 1 cut(s) 1368
Alw21I GWGCWC 1 cut(s) 1454
Alw26I GTCTC 1 cut(s) 1467
AlwI GGATC 6 cut(s) 33, 123, 414, 497, 1157, 1318
Ama87I CYCGRG 1 cut(s) 834
Aor51HI AGCGCT 1 cut(s) 1353
AoxI GGCC 4 cut(s) 57, 580, 748, 1314
ApoI RAATTY 2 cut(s) 1065, 1281
AseI ATTAAT 1 cut(s) 1131
Asp700I GAANNNNTTC 2 cut(s) 438, 487
AspLEI GCGC 2 cut(s) 1196, 1354
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 6 cut(s) 39, 331, 512, 710, 835, 1051
AsuII TTCGAA 1 cut(s) 547
AvaI CYCGRG 1 cut(s) 834
AvaII GGWCC 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 1225
BanII GRGCYC 1 cut(s) 1454
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 1454
BccI CCATC 5 cut(s) 265, 881, 887, 1136, 1301
BcgI CGANNNNNNTGC 2 cut(s) 1217, 1251
BciT130I CCWGG 1 cut(s) 1370
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 1 cut(s) 1467
BfaI CTAG 5 cut(s) 177, 810, 1073, 1091, 1466
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 1355
BfrI CTTAAG 1 cut(s) 410
Bme1390I CCNGG 2 cut(s) 1029, 1370
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 834
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 6, 196
BmrFI CCNGG 2 cut(s) 1029, 1370
BmsI GCATC 2 cut(s) 448, 796
BoxI GACNNNNGTC 1 cut(s) 1236
BplI GAGNNNNNCTC 2 cut(s) 308, 340
Bpu14I TTCGAA 1 cut(s) 547
BpuMI CCSGG 1 cut(s) 1029
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 833, 1028
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 99, 608, 1068
Bse1I ACTGG 3 cut(s) 240, 1014, 1041
Bse21I CCTNAGG 1 cut(s) 446
Bse3DI GCAATG 3 cut(s) 565, 796, 1400
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 1370
BseDI CCNNGG 2 cut(s) 833, 1028
BseGI GGATG 3 cut(s) 463, 873, 1087
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 4 cut(s) 22, 99, 608, 1068
BseMI GCAATG 3 cut(s) 565, 796, 1400
BseMII CTCAG 4 cut(s) 306, 339, 953, 1467
BseNI ACTGG 3 cut(s) 240, 1014, 1041
BseSI GKGCMC 1 cut(s) 1225
BseYI CCCAGC 1 cut(s) 646
BshFI GGCC 4 cut(s) 59, 582, 750, 1316
BsiHKAI GWGCWC 1 cut(s) 1454
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 2 cut(s) 266, 1028
BslFI GGGAC 1 cut(s) 1047
BslI CCNNNNNNNGG 4 cut(s) 22, 99, 608, 1068
BsmAI GTCTC 1 cut(s) 1467
BsmBI CGTCTC 1 cut(s) 1467
BsmFI GGGAC 1 cut(s) 1047
BsmI GAATGC 2 cut(s) 489, 997
BsnI GGCC 4 cut(s) 59, 582, 750, 1316
BsoBI CYCGRG 1 cut(s) 834
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 2 cut(s) 1225, 1454
Bsp143I GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
BspACI CCGC 2 cut(s) 231, 455
BspANI GGCC 4 cut(s) 59, 582, 750, 1316
BspCNI CTCAG 4 cut(s) 307, 338, 952, 1466
BspHI TCATGA 3 cut(s) 166, 667, 1357
BspLI GGNNCC 2 cut(s) 6, 196
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 6 cut(s) 33, 123, 414, 497, 1157, 1318
BspQI GCTCTTC 1 cut(s) 1442
BspT104I TTCGAA 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 410
BsrDI GCAATG 3 cut(s) 565, 796, 1400
BsrI ACTGG 3 cut(s) 240, 1014, 1041
BssECI CCNNGG 2 cut(s) 833, 1028
BssMI GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 1370
Bst4CI ACNGT 8 cut(s) 289, 641, 698, 766, 772, 785, 1102, 1330
Bst6I CTCTTC 2 cut(s) 977, 1442
BstAFI CTTAAG 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 1149, 1350
BstDEI CTNAG 6 cut(s) 315, 325, 446, 743, 939, 1453
BstF5I GGATG 3 cut(s) 463, 873, 1087
BstH2I RGCGCY 1 cut(s) 1355
BstHHI GCGC 2 cut(s) 1196, 1354
BstKTI GATC 8 cut(s) 28, 118, 409, 477, 505, 1108, 1165, 1313
BstMAI GTCTC 1 cut(s) 1467
BstMBI GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
BstMWI GCNNNNNNNGC 3 cut(s) 236, 461, 656
BstNI CCWGG 1 cut(s) 1370
BstNSI RCATGY 1 cut(s) 1151
BstPAI GACNNNNGTC 1 cut(s) 1236
BstSCI CCNGG 2 cut(s) 1027, 1368
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 1 cut(s) 1225
BstX2I RGATCY 2 cut(s) 25, 406
BstYI RGATCY 2 cut(s) 25, 406
Bsu36I CCTNAGG 1 cut(s) 446
BsuRI GGCC 4 cut(s) 59, 582, 750, 1316
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 3 cut(s) 463, 873, 1087
BtsI GCAGTG 2 cut(s) 1223, 1527
BtsIMutI CAGTG 7 cut(s) 151, 484, 790, 1098, 1223, 1437, 1527
Cac8I GCNNGC 2 cut(s) 1149, 1350
CciI TCATGA 3 cut(s) 166, 667, 1357
CfoI GCGC 2 cut(s) 1196, 1354
Cfr13I GGNCC 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 1368
Csp6I GTAC 3 cut(s) 329, 594, 734
CviAII CATG 9 cut(s) 108, 167, 668, 1148, 1160, 1229, 1304, 1358, 1499
CviQI GTAC 3 cut(s) 329, 594, 734
DdeI CTNAG 6 cut(s) 315, 325, 446, 743, 939, 1453
DpnI GATC 8 cut(s) 27, 117, 408, 476, 504, 1107, 1164, 1312
DpnII GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 2 cut(s) 977, 1442
EarI CTCTTC 2 cut(s) 977, 1442
Ecl136II GAGCTC 1 cut(s) 1452
Eco24I GRGCYC 1 cut(s) 1454
Eco47I GGWCC 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 1353
Eco53kI GAGCTC 1 cut(s) 1452
Eco57I CTGAAG 2 cut(s) 180, 744
Eco81I CCTNAGG 1 cut(s) 446
Eco88I CYCGRG 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 1452
EcoRII CCWGG 1 cut(s) 1368
EcoT38I GRGCYC 1 cut(s) 1454
Esp3I CGTCTC 1 cut(s) 1467
FaeI CATG 9 cut(s) 111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 1035, 1067
FaqI GGGAC 1 cut(s) 1047
FatI CATG 9 cut(s) 107, 166, 667, 1147, 1159, 1228, 1303, 1357, 1498
FblI GTMKAC 2 cut(s) 378, 636
FokI GGATG 3 cut(s) 470, 860, 1094
FriOI GRGCYC 1 cut(s) 1454
FspBI CTAG 5 cut(s) 177, 810, 1073, 1091, 1466
GlaI GCGC 2 cut(s) 1195, 1353
GsaI CCCAGC 1 cut(s) 650
HaeII RGCGCY 1 cut(s) 1355
HaeIII GGCC 4 cut(s) 59, 582, 750, 1316
HapII CCGG 2 cut(s) 266, 1028
HhaI GCGC 2 cut(s) 1196, 1354
Hin1II CATG 9 cut(s) 111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
Hin6I GCGC 2 cut(s) 1194, 1352
HinP1I GCGC 2 cut(s) 1194, 1352
HincII GTYRAC 2 cut(s) 285, 1096
HindII GTYRAC 2 cut(s) 285, 1096
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 8 cut(s) 63, 141, 260, 278, 985, 1427, 1475, 1517
HpaII CCGG 2 cut(s) 266, 1028
HphI GGTGA 6 cut(s) 39, 331, 512, 710, 835, 1051
Hpy166II GTNNAC 6 cut(s) 285, 322, 379, 637, 781, 1096
Hpy188I TCNGA 5 cut(s) 115, 160, 300, 942, 1287
Hpy8I GTNNAC 6 cut(s) 285, 322, 379, 637, 781, 1096
Hpy99I CGWCG 1 cut(s) 1242
HpyAV CCTTC 3 cut(s) 943, 1106, 1432
HpyCH4III ACNGT 8 cut(s) 289, 641, 698, 766, 772, 785, 1102, 1330
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 461, 656
HpyF3I CTNAG 6 cut(s) 315, 325, 446, 743, 939, 1453
Hsp92II CATG 9 cut(s) 111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
HspAI GCGC 2 cut(s) 1194, 1352
Kzo9I GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
LguI GCTCTTC 1 cut(s) 1442
LmnI GCTCC 3 cut(s) 4, 1387, 1441
LweI GCATC 2 cut(s) 448, 796
MabI ACCWGGT 1 cut(s) 1368
MaeI CTAG 5 cut(s) 177, 810, 1073, 1091, 1466
MaeIII GTNAC 5 cut(s) 766, 1122, 1256, 1291, 1324
MalI GATC 8 cut(s) 27, 117, 408, 476, 504, 1107, 1164, 1312
MboI GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
MboII GAAGA 3 cut(s) 484, 994, 1459
MflI RGATCY 2 cut(s) 25, 406
MhlI GDGCHC 2 cut(s) 1225, 1454
MlyI GAGTC 4 cut(s) 150, 287, 994, 1526
MmeI TCCRAC 1 cut(s) 736
MroXI GAANNNNTTC 2 cut(s) 438, 487
MseI TTAA 7 cut(s) 359, 390, 411, 693, 708, 902, 1131
MspA1I CMGCKG 4 cut(s) 233, 455, 650, 953
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 2 cut(s) 266, 1028
MspR9I CCNGG 2 cut(s) 1029, 1370
Mva1269I GAATGC 2 cut(s) 489, 997
MvaI CCWGG 1 cut(s) 1370
MwoI GCNNNNNNNGC 3 cut(s) 236, 461, 656
NciI CCSGG 1 cut(s) 1029
NdeII GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
NlaIII CATG 9 cut(s) 111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
NlaIV GGNNCC 2 cut(s) 6, 196
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 3 cut(s) 1256, 1291, 1324
NspI RCATGY 1 cut(s) 1151
NspV TTCGAA 1 cut(s) 547
PaeI GCATGC 1 cut(s) 1151
PagI TCATGA 3 cut(s) 166, 667, 1357
PciSI GCTCTTC 1 cut(s) 1442
PctI GAATGC 2 cut(s) 489, 997
PdmI GAANNNNTTC 2 cut(s) 438, 487
PfeI GAWTC 4 cut(s) 63, 260, 1427, 1475
PleI GAGTC 4 cut(s) 149, 286, 993, 1525
PpsI GAGTC 4 cut(s) 149, 286, 993, 1525
PshAI GACNNNNGTC 1 cut(s) 1236
PshBI ATTAAT 1 cut(s) 1131
Psp124BI GAGCTC 1 cut(s) 1454
Psp6I CCWGG 1 cut(s) 1368
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 1368
PspN4I GGNNCC 2 cut(s) 6, 196
PspPI GGNCC 1 cut(s) 195
PsrI GAACNNNNNNTAC 2 cut(s) 751, 783
PstI CTGCAG 1 cut(s) 952
PsuI RGATCY 2 cut(s) 25, 406
PvuII CAGCTG 2 cut(s) 650, 953
RsaI GTAC 3 cut(s) 330, 595, 735
RsaNI GTAC 3 cut(s) 329, 594, 734
SacI GAGCTC 1 cut(s) 1454
SapI GCTCTTC 1 cut(s) 1442
SaqAI TTAA 7 cut(s) 359, 390, 411, 693, 708, 902, 1131
Sau3AI GATC 8 cut(s) 25, 115, 406, 474, 502, 1105, 1162, 1310
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 4 cut(s) 150, 287, 994, 1526
ScrFI CCNGG 2 cut(s) 1029, 1370
SduI GDGCHC 2 cut(s) 1225, 1454
SexAI ACCWGGT 1 cut(s) 1368
SfaNI GCATC 2 cut(s) 448, 796
SfcI CTRYAG 1 cut(s) 948
SfuI TTCGAA 1 cut(s) 547
SinI GGWCC 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SphI GCATGC 1 cut(s) 1151
SsiI CCGC 2 cut(s) 231, 455
SspMI CTAG 5 cut(s) 177, 810, 1073, 1091, 1466
SstI GAGCTC 1 cut(s) 1454
StyD4I CCNGG 2 cut(s) 1027, 1368
TaaI ACNGT 8 cut(s) 289, 641, 698, 766, 772, 785, 1102, 1330
TaqI TCGA 4 cut(s) 258, 432, 547, 1240
TatI WGTACW 2 cut(s) 328, 733
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 63, 260, 1427, 1475
Tru1I TTAA 7 cut(s) 359, 390, 411, 693, 708, 902, 1131
Tru9I TTAA 7 cut(s) 359, 390, 411, 693, 708, 902, 1131
TscAI CASTG 7 cut(s) 151, 484, 790, 1105, 1230, 1437, 1534
TseFI GTSAC 3 cut(s) 1256, 1291, 1324
Tsp45I GTSAC 3 cut(s) 1256, 1291, 1324
TspRI CASTG 7 cut(s) 151, 484, 790, 1105, 1230, 1437, 1534
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 195
VspI ATTAAT 1 cut(s) 1131
XapI RAATTY 2 cut(s) 1065, 1281
XbaI TCTAGA 1 cut(s) 1465
XceI RCATGY 1 cut(s) 1151
XmiI GTMKAC 2 cut(s) 378, 636
XmnI GAANNNNTTC 2 cut(s) 438, 487
XspI CTAG 5 cut(s) 177, 810, 1073, 1091, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.