Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009498

Physical Location & Seq

Genomic Coordinates Reverse (-)

5142167 .. 5144880

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05370.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGCCTCTCTGCCGAAACTTGGATCTCAAACCAGCAACTTTCCCACCAATTTCACCAAGATTCCCAAAACCCATTTCCCTGTCACTGCGTTCTCATCGGTTTTCGTGCTCGGATCGCCAGGTGACCAAGAAATGGAGGGTGTCTGTTGGCAATGCAAACTCGGAAGCTAAGTTTTCCAGTCAGGAGTTGGTGAGGGCAATTAGAAAAGGGTTGCTTGCATTTGCCGCTGCCGCTGCTGCAAATTATGCTGTTGTTTGTTGCGATTATCCGGCGATGGCGGAGTCTCTGACGTTGGCCTTTCCGGTGTCACGCACTACTGAGGTGAATTCAGTACAAAGAACTCTTGTGGAGACTTGGGGTTTGATTAGGGAAACATTCGTAGACCCGACATTTAATCATCAAGATTGGGATCAAAAGTTTCAGCAGACGATGACAGAAATGTTTCCCCTTAAGTCTGCTGATGCAGCATATATGAAAATCAGTGGAATGCTATCTACTCTTGGCGATCCCTTTACGCGGATCATCAGTCCCAAGGAATATCAAAGTTTTCGTATTGGAAGCAATGGAAATCTACAAGGAGTTGGCCTTTTCATAAATACTGAACCAAGAACAGGCCATTTGGTTGTTTTGTCTTGTGTAGAGGGTGGCCCAGCTGCTCGCGCTGGTTTACATCAAGGAGATGAGTTGGTTGAAATTAATGGAGAGAAGGTGGATGGTATTGACACTGAAGCAGCCATACAGAAACTTAGAGGGCGAGTTGGAACAACAGTTACAGTAAAAGTTCACAGAGTAATAATCAACTCTCTTTGTTTTCAAGTTGCAGCAGAAATTATGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

281

Amino Acids

30.82

Weight (kDa)

8.74

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57680 AT3G57680 AT3G57680
fragaria_vesca	FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140
malus_domestica	MD12G1066100.v1.1 MD14G1066000.v1.1
prunus_persica	Prupe.7G068000_v2.0.a1
pyrus_communis	pycom12g05770 pycom14g05370
rosa_chinensis	RchiOBHm_Chr3g0480991
rosa_laevigata	RLG00000023435
rosa_multiflora	Rmu_sc0002927.1_g000022
rosa_roxburghii	Rroxscaffold_6G00400770
rosa_rugosa	Rorug03G0188700
rosa_samantha	Rh3AG239500 Rh3CG269500 Rh3DG265500
rosa_wichuraiana	Rw0G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	2 cut(s)	520, 663
AciI	CCGC	4 cut(s)	228, 234, 281, 520
AclWI	GGATC	5 cut(s)	33, 123, 420, 503, 530
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	4 cut(s)	22, 135, 519, 614
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	695, 818
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	2 cut(s)	170, 656
AluI	AGCT	2 cut(s)	170, 656
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	2 cut(s)	291, 347
AlwI	GGATC	5 cut(s)	33, 123, 420, 503, 530
AoxI	GGCC	4 cut(s)	297, 586, 616, 649
ApeKI	GCWGC	7 cut(s)	230, 236, 239, 467, 656, 734, 824
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AseI	ATTAAT	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	48, 136, 205, 337
BarI	GAAGNNNNNNTAC	2 cut(s)	723, 755
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	7 cut(s)	217, 223, 226, 479, 643, 746, 836
BccI	CCATC	2 cut(s)	271, 710
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	291, 347
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	9 cut(s)	228, 231, 234, 237, 240, 468, 657, 735, 825
BlsI	GCNGC	9 cut(s)	229, 232, 235, 238, 241, 469, 658, 736, 826
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 135, 519, 614
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	2 cut(s)	160, 571
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	721
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	22, 135, 519, 614
BseMI	GCAATG	2 cut(s)	160, 571
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	7 cut(s)	217, 223, 226, 479, 643, 746, 836
BseYI	CCCAGC	1 cut(s)	652
Bsh1236I	CGCG	2 cut(s)	520, 663
BshFI	GGCC	4 cut(s)	299, 588, 618, 651
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	272, 305
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	4 cut(s)	22, 135, 519, 614
BsmAI	GTCTC	2 cut(s)	291, 347
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	4 cut(s)	299, 588, 618, 651
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	25, 115, 412, 508, 522
BspACI	CCGC	4 cut(s)	228, 234, 281, 520
BspANI	GGCC	4 cut(s)	299, 588, 618, 651
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	520, 663
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	5 cut(s)	33, 123, 420, 503, 530
BspTI	CTTAAG	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	160, 571
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	25, 115, 412, 508, 522
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	772, 778
BstAFI	CTTAAG	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	219, 661
BstDEI	CTNAG	3 cut(s)	171, 321, 749
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	2 cut(s)	520, 663
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	5 cut(s)	28, 118, 415, 511, 525
BstMAI	GTCTC	2 cut(s)	291, 347
BstMBI	GATC	5 cut(s)	25, 115, 412, 508, 522
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 227, 233, 236, 239, 248, 467, 662
BstNI	CCWGG	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	520, 663
BstV1I	GCAGC	7 cut(s)	217, 223, 226, 479, 643, 746, 836
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	4 cut(s)	299, 588, 618, 651
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	3 cut(s)	86, 490, 726
Cac8I	GCNNGC	2 cut(s)	219, 661
CfoI	GCGC	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	650
Csp6I	GTAC	1 cut(s)	335
CviJI	RGCY	8 cut(s)	7, 170, 299, 588, 618, 651, 656, 737
CviKI_1	RGCY	8 cut(s)	7, 170, 299, 588, 618, 651, 656, 737
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	171, 321, 749
DpnI	GATC	5 cut(s)	27, 117, 414, 510, 524
DpnII	GATC	5 cut(s)	25, 115, 412, 508, 522
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaiI	YATR	7 cut(s)	249, 472, 474, 476, 596, 740, 836
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	9 cut(s)	228, 231, 234, 237, 240, 468, 657, 735, 825
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	9 cut(s)	228, 231, 234, 237, 240, 468, 657, 735, 825
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	9 cut(s)	228, 231, 234, 237, 240, 468, 657, 735, 825
GsaI	CCCAGC	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	299, 588, 618, 651
HapII	CCGG	2 cut(s)	272, 305
HhaI	GCGC	1 cut(s)	665
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HinfI	GANTC	2 cut(s)	63, 284
HpaII	CCGG	2 cut(s)	272, 305
HphI	GGTGA	4 cut(s)	48, 136, 205, 337
Hpy166II	GTNNAC	3 cut(s)	385, 671, 787
Hpy188I	TCNGA	3 cut(s)	115, 166, 291
Hpy188III	TCNNGA	2 cut(s)	185, 404
Hpy8I	GTNNAC	3 cut(s)	385, 671, 787
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	2 cut(s)	772, 778
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	158, 221, 242, 467, 824
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 227, 233, 236, 239, 248, 467, 662
HpyF3I	CTNAG	3 cut(s)	171, 321, 749
HpySE526I	ACGT	1 cut(s)	293
HspAI	GCGC	1 cut(s)	663
Kzo9I	GATC	5 cut(s)	25, 115, 412, 508, 522
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	7 cut(s)	217, 223, 226, 479, 643, 746, 836
LweI	GCATC	1 cut(s)	454
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	4 cut(s)	84, 124, 309, 772
MalI	GATC	5 cut(s)	27, 117, 414, 510, 524
MboI	GATC	5 cut(s)	25, 115, 412, 508, 522
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	6 cut(s)	51, 201, 244, 328, 696, 831
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	6 cut(s)	18, 132, 189, 316, 637, 746
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	3 cut(s)	396, 453, 699
MspA1I	CMGCKG	3 cut(s)	230, 236, 656
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	2 cut(s)	272, 305
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	2 cut(s)	520, 663
MwoI	GCNNNNNNNGC	8 cut(s)	117, 227, 233, 236, 239, 248, 467, 662
NdeII	GATC	5 cut(s)	25, 115, 412, 508, 522
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	84, 124, 309
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	63
PflMI	CCANNNNNTGG	1 cut(s)	135
PkrI	GCNGC	9 cut(s)	229, 232, 235, 238, 241, 469, 658, 736, 826
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	650
PsrI	GAACNNNNNNTAC	2 cut(s)	757, 789
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	396, 453, 699
SatI	GCNGC	9 cut(s)	228, 231, 234, 237, 240, 468, 657, 735, 825
Sau3AI	GATC	5 cut(s)	25, 115, 412, 508, 522
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	6 cut(s)	126, 172, 296, 327, 658, 714
SfaNI	GCATC	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	6 cut(s)	51, 201, 244, 328, 696, 831
SsiI	CCGC	4 cut(s)	228, 234, 281, 520
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	772, 778
TaiI	ACGT	1 cut(s)	296
TasI	AATT	6 cut(s)	51, 201, 244, 328, 696, 831
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	2 cut(s)	230, 236
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	3 cut(s)	396, 453, 699
Tru9I	TTAA	3 cut(s)	396, 453, 699
TscAI	CASTG	3 cut(s)	93, 490, 733
TseFI	GTSAC	3 cut(s)	84, 124, 309
TseI	GCWGC	7 cut(s)	230, 236, 239, 467, 656, 734, 824
Tsp45I	GTSAC	3 cut(s)	84, 124, 309
TspDTI	ATGAA	2 cut(s)	491, 583
TspRI	CASTG	3 cut(s)	93, 490, 733
Van91I	CCANNNNNTGG	1 cut(s)	135
Vha464I	CTTAAG	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	699
XapI	RAATTY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.