Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009498

Physical Location & Seq

Genomic Coordinates Reverse (-)

26460111 .. 26464659

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGAGCCTCTTTGCCCAAACTTGGATCTCAAACCAACACCTTGCTCACCAATTTCGCCCAGATTCCCAAAACCCACCTCACTTTTACTGCCCCCGCATCGGTTTTCATGCTCGGATCGCAGTGTGAGCCGGAAATGGAGAGTCAGTGCTGCAAAGTCTGAAGCTCATGAAAACTCTAGCCAGGAACTCTTTGGGTCCATTAGAAAAGGCTTTCTTGCGTTTTCTGTTGCCGCTGCTGCCAGTTTTTCGCTCTGTTTCGATTCTCCGGCGATGGCAGAGTCGTTGACCGTTGCTTTTCCGGTTTCACGCACTACTGAGGTGAACTCAGTACAAAGAACTCTTGTGGAGGCTTGGGGTTTAATTAGAGAAACATTCGTAGACCCAACATTTAATCATCAAGATTGGGATCTTAAGTTGCAGCAAACAATGGTCGAAATGTTTCCCCTTAGGTCAGCGGATGCAGCTTATATGAAGATCAGTGGAATGCTTTCTACTCTTGGTGATCCCTTTACAAAGATTATTAGTCCAAAGGAATATCAAAGTTTTCGAATTGGAAGCAATGGAAATCTACAAGGAGTTGGCCTTTTCATAGGTACTGAACCAAGAACAGGTCATCTGGTTGTTATGTCTTGTGTAGACGGTAGCCCAGCTGCTCGTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTAACGGTGAGAAGTTTAATGGTGTTGACACTGAAGCAGCAGTACAGAAGCTTAGAGGACGAGTTGGAACAACTGTTACAGTAAAAGTTCACAGTGGCAATGATTTGGGAAGTGATGCTAGTATAAGAGAGGTGAAATTACCACGGGAGTTCATTAAGGTTTCCCCAATTTCAACTGCAACCATCCCTCATAGAACCCCCGATGGACATTTAACAAAGACGGGTTATGTGAAGCTGTCAGCCTTCTCTCAGACTGCTGCAGCTGATATGGAAAATGCTATCAAGGAAATGAAGAGTCAGGGTGTACATTCATACATACTGGATTTGAGGAACAATCCGGGGGGACTGGTGAAAGCTGGACTTGATGTTGCCCAAATTTGGCTAGACGGGGATGAAACTCTAGTCAACACTGTTGATCGGGAAGGGAACTTGTTACCAATTAATATGGTAGATGGGCATGCTATCACACATGATCCACTTGTTGTGCTTGTCAATGAGGGCAGCGCAAGTGCAAGTGAAATCTTGGCAGGGGCACTGCATGACAATCGTCGAGCTACTCTTGTGGGTCACCGAACCTTTGGGAAAGGAAAAATTCAGGTAGTCAGTTCTTATATAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

436

Amino Acids

47.14

Weight (kDa)

6.51

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ	PF00595	193 - 260	1.1e-10	PDZ domain
PDZ_2	PF13180	197 - 264	4.1e-08	PDZ domain
PDZ_6	PF17820	208 - 260	1.2e-09	PDZ domain
Peptidase_S41	PF03572	303 - 431	3e-39	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57680 AT3G57680 AT3G57680
fragaria_vesca	FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140
malus_domestica	MD12G1066100.v1.1 MD14G1066000.v1.1
prunus_persica	Prupe.7G068000_v2.0.a1
pyrus_communis	pycom12g05770 pycom14g05370
rosa_chinensis	RchiOBHm_Chr3g0480991
rosa_laevigata	RLG00000023435
rosa_multiflora	Rmu_sc0002927.1_g000022
rosa_roxburghii	Rroxscaffold_6G00400770
rosa_rugosa	Rorug03G0188700
rosa_samantha	Rh3AG239500 Rh3CG269500 Rh3DG265500
rosa_wichuraiana	Rw0G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	378, 636
AciI	CCGC	3 cut(s)	95, 231, 455
AclWI	GGATC	5 cut(s)	33, 123, 414, 497, 1157
AcsI	RAATTY	2 cut(s)	1065, 1281
AcuI	CTGAAG	2 cut(s)	180, 744
AfaI	GTAC	4 cut(s)	330, 595, 735, 996
AfiI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	689, 864
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	8 cut(s)	164, 464, 650, 742, 925, 953, 1046, 1244
AluI	AGCT	8 cut(s)	164, 464, 650, 742, 925, 953, 1046, 1244
AlwI	GGATC	5 cut(s)	33, 123, 414, 497, 1157
AoxI	GGCC	1 cut(s)	580
ApoI	RAATTY	2 cut(s)	1065, 1281
AseI	ATTAAT	1 cut(s)	1131
Asp700I	GAANNNNTTC	2 cut(s)	438, 487
AspLEI	GCGC	1 cut(s)	1196
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	1029
AsuHPI	GGTGA	7 cut(s)	39, 331, 512, 710, 835, 1051, 1250
AsuII	TTCGAA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	1225
BarI	GAAGNNNNNNTAC	2 cut(s)	717, 749
BauI	CACGAG	1 cut(s)	654
BccI	CCATC	4 cut(s)	265, 881, 887, 1136
BcgI	CGANNNNNNTGC	2 cut(s)	1217, 1251
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	1 cut(s)	1029
BfaI	CTAG	4 cut(s)	177, 810, 1073, 1091
BfmI	CTRYAG	1 cut(s)	948
BfrI	CTTAAG	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	182, 1029
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	6, 196
BmrFI	CCNGG	2 cut(s)	182, 1029
BmsI	GCATC	3 cut(s)	106, 448, 796
BoxI	GACNNNNGTC	1 cut(s)	1236
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu14I	TTCGAA	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	1029
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	833, 1028
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
Bse1I	ACTGG	3 cut(s)	240, 1014, 1041
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	2 cut(s)	565, 796
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	833, 1028
BseGI	GGATG	3 cut(s)	463, 873, 1087
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
BseMI	GCAATG	2 cut(s)	565, 796
BseMII	CTCAG	3 cut(s)	306, 339, 953
BseNI	ACTGG	3 cut(s)	240, 1014, 1041
BseSI	GKGCMC	1 cut(s)	1225
BseYI	CCCAGC	1 cut(s)	646
BshFI	GGCC	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	130, 266, 299, 1028
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
BsmFI	GGGAC	1 cut(s)	1047
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	582
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	1 cut(s)	1225
Bsp1407I	TGTACA	1 cut(s)	994
Bsp143I	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
BspACI	CCGC	3 cut(s)	95, 231, 455
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	3 cut(s)	307, 338, 952
BspHI	TCATGA	2 cut(s)	166, 667
BspLI	GGNNCC	2 cut(s)	6, 196
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	5 cut(s)	33, 123, 414, 497, 1157
BspT104I	TTCGAA	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	565, 796
BsrGI	TGTACA	1 cut(s)	994
BsrI	ACTGG	3 cut(s)	240, 1014, 1041
BssECI	CCNNGG	2 cut(s)	833, 1028
BssMI	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
BssSI	CACGAG	1 cut(s)	654
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	7 cut(s)	289, 641, 698, 766, 772, 785, 1102
Bst6I	CTCTTC	1 cut(s)	977
BstAFI	CTTAAG	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	994
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	1149
BstDEI	CTNAG	5 cut(s)	315, 325, 446, 743, 939
BstDSI	CCRYGG	1 cut(s)	833
BstEII	GGTNACC	1 cut(s)	1256
BstF5I	GGATG	3 cut(s)	463, 873, 1087
BstHHI	GCGC	1 cut(s)	1196
BstKTI	GATC	7 cut(s)	28, 118, 409, 477, 505, 1108, 1165
BstMBI	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	1151
BstPAI	GACNNNNGTC	1 cut(s)	1236
BstPI	GGTNACC	1 cut(s)	1256
BstSCI	CCNGG	2 cut(s)	180, 1027
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	1225
BstX2I	RGATCY	2 cut(s)	25, 406
BstYI	RGATCY	2 cut(s)	25, 406
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	463, 873, 1087
BtsI	GCAGTG	2 cut(s)	127, 1223
BtsIMutI	CAGTG	7 cut(s)	127, 151, 484, 720, 790, 1098, 1223
Cac8I	GCNNGC	1 cut(s)	1149
CciI	TCATGA	2 cut(s)	166, 667
CfoI	GCGC	1 cut(s)	1196
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	329, 594, 734, 995
CviAII	CATG	7 cut(s)	108, 167, 668, 1148, 1160, 1229, 1308
CviQI	GTAC	4 cut(s)	329, 594, 734, 995
DdeI	CTNAG	5 cut(s)	315, 325, 446, 743, 939
DpnI	GATC	7 cut(s)	27, 117, 408, 476, 504, 1107, 1164
DpnII	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	180, 744
Eco81I	CCTNAGG	1 cut(s)	446
Eco91I	GGTNACC	1 cut(s)	1256
EcoO65I	GGTNACC	1 cut(s)	1256
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	7 cut(s)	111, 170, 671, 1151, 1163, 1232, 1311
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 1035, 1067
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	7 cut(s)	107, 166, 667, 1147, 1159, 1228, 1307
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	2 cut(s)	378, 636
FokI	GGATG	3 cut(s)	470, 860, 1094
FspBI	CTAG	4 cut(s)	177, 810, 1073, 1091
GlaI	GCGC	1 cut(s)	1195
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	4 cut(s)	130, 266, 299, 1028
HhaI	GCGC	1 cut(s)	1196
Hin1II	CATG	7 cut(s)	111, 170, 671, 1151, 1163, 1232, 1311
Hin6I	GCGC	1 cut(s)	1194
HinP1I	GCGC	1 cut(s)	1194
HincII	GTYRAC	3 cut(s)	285, 718, 1096
HindII	GTYRAC	3 cut(s)	285, 718, 1096
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	5 cut(s)	63, 141, 260, 278, 985
HpaII	CCGG	4 cut(s)	130, 266, 299, 1028
HphI	GGTGA	7 cut(s)	39, 331, 512, 710, 835, 1051, 1250
Hpy166II	GTNNAC	8 cut(s)	285, 322, 379, 637, 718, 781, 995, 1096
Hpy188I	TCNGA	3 cut(s)	115, 160, 942
Hpy188III	TCNNGA	4 cut(s)	167, 398, 668, 1109
Hpy8I	GTNNAC	8 cut(s)	285, 322, 379, 637, 718, 781, 995, 1096
Hpy99I	CGWCG	1 cut(s)	1242
HpyAV	CCTTC	2 cut(s)	943, 1106
HpyCH4III	ACNGT	7 cut(s)	289, 641, 698, 766, 772, 785, 1102
HpyCH4V	TGCA	7 cut(s)	152, 418, 461, 869, 950, 1202, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
HpyF3I	CTNAG	5 cut(s)	315, 325, 446, 743, 939
Hsp92II	CATG	7 cut(s)	111, 170, 671, 1151, 1163, 1232, 1311
HspAI	GCGC	1 cut(s)	1194
Kzo9I	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	3 cut(s)	106, 448, 796
MaeI	CTAG	4 cut(s)	177, 810, 1073, 1091
MaeIII	GTNAC	3 cut(s)	766, 1122, 1256
MalI	GATC	7 cut(s)	27, 117, 408, 476, 504, 1107, 1164
MboI	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
MboII	GAAGA	2 cut(s)	484, 994
MflI	RGATCY	2 cut(s)	25, 406
MhlI	GDGCHC	1 cut(s)	1225
MluCI	AATT	9 cut(s)	51, 360, 549, 690, 827, 858, 1065, 1128, 1281
MlyI	GAGTC	3 cut(s)	150, 287, 994
MmeI	TCCRAC	1 cut(s)	736
MroXI	GAANNNNTTC	2 cut(s)	438, 487
MseI	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
MspA1I	CMGCKG	4 cut(s)	233, 455, 650, 953
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	4 cut(s)	130, 266, 299, 1028
MspR9I	CCNGG	2 cut(s)	182, 1029
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
NciI	CCSGG	1 cut(s)	1029
NdeII	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
NlaIII	CATG	7 cut(s)	111, 170, 671, 1151, 1163, 1232, 1311
NlaIV	GGNNCC	2 cut(s)	6, 196
NmuCI	GTSAC	1 cut(s)	1256
NspI	RCATGY	1 cut(s)	1151
NspV	TTCGAA	1 cut(s)	547
PaeI	GCATGC	1 cut(s)	1151
PagI	TCATGA	2 cut(s)	166, 667
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	2 cut(s)	438, 487
PfeI	GAWTC	2 cut(s)	63, 260
PleI	GAGTC	3 cut(s)	149, 286, 993
PpsI	GAGTC	3 cut(s)	149, 286, 993
PshAI	GACNNNNGTC	1 cut(s)	1236
PshBI	ATTAAT	1 cut(s)	1131
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	1256
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	6, 196
PspPI	GGNCC	1 cut(s)	195
PsrI	GAACNNNNNNTAC	2 cut(s)	751, 783
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	25, 406
PvuII	CAGCTG	2 cut(s)	650, 953
RsaI	GTAC	4 cut(s)	330, 595, 735, 996
RsaNI	GTAC	4 cut(s)	329, 594, 734, 995
SaqAI	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
Sau3AI	GATC	7 cut(s)	25, 115, 406, 474, 502, 1105, 1162
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	3 cut(s)	150, 287, 994
ScrFI	CCNGG	2 cut(s)	182, 1029
SduI	GDGCHC	1 cut(s)	1225
SfaNI	GCATC	3 cut(s)	106, 448, 796
SfcI	CTRYAG	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	1151
Sse9I	AATT	9 cut(s)	51, 360, 549, 690, 827, 858, 1065, 1128, 1281
SsiI	CCGC	3 cut(s)	95, 231, 455
SspMI	CTAG	4 cut(s)	177, 810, 1073, 1091
StyD4I	CCNGG	2 cut(s)	180, 1027
TaaI	ACNGT	7 cut(s)	289, 641, 698, 766, 772, 785, 1102
TaqI	TCGA	4 cut(s)	258, 432, 547, 1240
TasI	AATT	9 cut(s)	51, 360, 549, 690, 827, 858, 1065, 1128, 1281
TatI	WGTACW	3 cut(s)	328, 733, 994
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	63, 260
Tru1I	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
Tru9I	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
TscAI	CASTG	7 cut(s)	127, 151, 484, 727, 790, 1105, 1230
TseFI	GTSAC	1 cut(s)	1256
Tsp45I	GTSAC	1 cut(s)	1256
TspDTI	ATGAA	9 cut(s)	96, 183, 485, 577, 656, 832, 990, 995, 1098
TspRI	CASTG	7 cut(s)	127, 151, 484, 727, 790, 1105, 1230
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	1131
XapI	RAATTY	2 cut(s)	1065, 1281
XceI	RCATGY	1 cut(s)	1151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	2 cut(s)	378, 636
XmnI	GAANNNNTTC	2 cut(s)	438, 487
XspI	CTAG	4 cut(s)	177, 810, 1073, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.