Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002927.1

Orthogroup ID

OG0009498

Physical Location & Seq

Genomic Coordinates Reverse (-)

67490 .. 71895

Gene Structure 4406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002927.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

atggagcctctttgcccaaacttggatctcaaaccaacaccttgctcaccaatttcgcccagattcccaaaacccacctcacttttactgcccccgcatcggttttcatgctcggatcgcagtgtgagccggaaatggagagtcagtgctgcaaagtctgaagctcatgaaaactctagtcaggaactctttgggtccattagaaaaggctgtcttgcgttttctgttgccgctgctgccagtttttcgctctgtttcgattctccggtgatggcagagtcgttgaccgttgcttttccggtttcacgcactactgaggtgaactcagtacaaagaactcttgtggaggcttggggtttaattagagaaacattcgtagacccaacatttaatcatcaagattgggatcttaagttgcagcaaacaatggtcgaaatgtttccccttaggtcagcggatgcagcttatatgaagatcagtggaatgctttctactcttggtgatccctttacaaagattattagtccaaaggaatatcaaagttttcgaattggaagcaatggaaatctacaaggagttggccttttcataggtactgaaccaagaacaggtcatctggttgttatgtcttgtgtagacggtagcccagctgctcgtgctggtattcatgagggagatgagttggttgaaattaacggtgagaagtttaatggtgttgacactgaagcagcagtacagaagcttagaggacgagttggaacaactgttacagtaaaagttcacagtggcaatgatttgggaagtgatgctagtataagagaggtgaaattacctcgggagttcattaaggtttccccaatttcaactgcaaccatccctcatagaacccccgatggacatttaacaaagacgggttatgtgaagctgtcagccttctctcagactgctgcagctgatatggaaaatgctatcaaggaaatgaagagtcagggtgtacattcatacatactggatttgaggaacaatccggggggactggtgaaagctggacttgatgttgcccaaatttggctagacggggatgaaactctagtcaacactgttgatcgggaagggaacttgttaccaattaatatggtagatgggcatgctatcacacatgatccacttgttgtgcttgtcaatgagggcagcgcaagtgcaagtgaaatcttggcaggggcactgcatgacaatcgtcgagctactcttgtgggtcacagaacctttgggaaaggaaaaattcagagtgtcacagagctgcatgatggatcggccttatttgtcacggtggcaaagtatttatcgccagcgcttcatgacatagaccaggttggcatagctcctgatgtacattgcacaactgaaatgctcaattctccaaaggattcaatgttgaaggagcaaaagagctcagtctcgtctctagaagcggattcctgtgttttggtagcagaacatgaattggacattcaagagtccaaaggcactgcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0016020 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

512

Amino Acids

55.25

Weight (kDa)

5.8

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57680 AT3G57680 AT3G57680
fragaria_vesca	FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140 FvH4_6g23140
malus_domestica	MD12G1066100.v1.1 MD14G1066000.v1.1
prunus_persica	Prupe.7G068000_v2.0.a1
pyrus_communis	pycom12g05770 pycom14g05370
rosa_chinensis	RchiOBHm_Chr3g0480991
rosa_laevigata	RLG00000023435
rosa_multiflora	Rmu_sc0002927.1_g000022
rosa_roxburghii	Rroxscaffold_6G00400770
rosa_rugosa	Rorug03G0188700
rosa_samantha	Rh3AG239500 Rh3CG269500 Rh3DG265500
rosa_wichuraiana	Rw0G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	378, 636
AciI	CCGC	4 cut(s)	95, 231, 455, 1472
AclWI	GGATC	6 cut(s)	33, 123, 414, 497, 1157, 1318
AcsI	RAATTY	2 cut(s)	1065, 1281
AcuI	CTGAAG	2 cut(s)	180, 744
AfaI	GTAC	5 cut(s)	330, 595, 735, 996, 1392
AfeI	AGCGCT	1 cut(s)	1353
AfiI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	689, 864, 1431, 1438, 1514
AjnI	CCWGG	1 cut(s)	1368
Alw21I	GWGCWC	1 cut(s)	1454
Alw26I	GTCTC	2 cut(s)	1462, 1467
AlwI	GGATC	6 cut(s)	33, 123, 414, 497, 1157, 1318
Ama87I	CYCGRG	1 cut(s)	834
Aor51HI	AGCGCT	1 cut(s)	1353
AoxI	GGCC	2 cut(s)	580, 1314
ApoI	RAATTY	2 cut(s)	1065, 1281
AseI	ATTAAT	1 cut(s)	1131
Asp700I	GAANNNNTTC	2 cut(s)	438, 487
AspLEI	GCGC	2 cut(s)	1196, 1354
AspS9I	GGNCC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	1029
AsuHPI	GGTGA	7 cut(s)	39, 280, 331, 512, 710, 835, 1051
AsuII	TTCGAA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	1225
BanII	GRGCYC	1 cut(s)	1454
BarI	GAAGNNNNNNTAC	2 cut(s)	717, 749
BauI	CACGAG	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	1454
BccI	CCATC	5 cut(s)	265, 881, 887, 1136, 1301
BcgI	CGANNNNNNTGC	2 cut(s)	1217, 1251
BciT130I	CCWGG	1 cut(s)	1370
BcnI	CCSGG	1 cut(s)	1029
BcoDI	GTCTC	2 cut(s)	1462, 1467
BfaI	CTAG	5 cut(s)	177, 810, 1073, 1091, 1466
BfmI	CTRYAG	1 cut(s)	948
BfoI	RGCGCY	1 cut(s)	1355
BfrI	CTTAAG	1 cut(s)	410
Bme1390I	CCNGG	2 cut(s)	1029, 1370
Bme18I	GGWCC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	6, 196
BmrFI	CCNGG	2 cut(s)	1029, 1370
BmsI	GCATC	3 cut(s)	106, 448, 796
BoxI	GACNNNNGTC	1 cut(s)	1236
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu14I	TTCGAA	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	1029
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	833, 1028
BsaWI	WCCGGW	2 cut(s)	265, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
Bse1I	ACTGG	3 cut(s)	240, 1014, 1041
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	3 cut(s)	565, 796, 1393
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	1370
BseDI	CCNNGG	2 cut(s)	833, 1028
BseGI	GGATG	3 cut(s)	463, 873, 1087
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
BseMI	GCAATG	3 cut(s)	565, 796, 1393
BseMII	CTCAG	4 cut(s)	306, 339, 953, 1467
BseNI	ACTGG	3 cut(s)	240, 1014, 1041
BseSI	GKGCMC	1 cut(s)	1225
BseYI	CCCAGC	1 cut(s)	646
BshFI	GGCC	2 cut(s)	582, 1316
BsiHKAI	GWGCWC	1 cut(s)	1454
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	130, 266, 299, 1028
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	4 cut(s)	22, 99, 608, 1068
BsmAI	GTCTC	2 cut(s)	1462, 1467
BsmBI	CGTCTC	1 cut(s)	1467
BsmFI	GGGAC	1 cut(s)	1047
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	582, 1316
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	1225, 1454
Bsp1407I	TGTACA	2 cut(s)	994, 1390
Bsp143I	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
BspACI	CCGC	4 cut(s)	95, 231, 455, 1472
BspANI	GGCC	2 cut(s)	582, 1316
BspCNI	CTCAG	4 cut(s)	307, 338, 952, 1466
BspHI	TCATGA	3 cut(s)	166, 667, 1357
BspLI	GGNNCC	2 cut(s)	6, 196
BspMAI	CTGCAG	1 cut(s)	952
BspPI	GGATC	6 cut(s)	33, 123, 414, 497, 1157, 1318
BspT104I	TTCGAA	1 cut(s)	547
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	3 cut(s)	565, 796, 1393
BsrGI	TGTACA	2 cut(s)	994, 1390
BsrI	ACTGG	3 cut(s)	240, 1014, 1041
BssECI	CCNNGG	2 cut(s)	833, 1028
BssMI	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
BssSI	CACGAG	1 cut(s)	654
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	1370
Bst4CI	ACNGT	8 cut(s)	289, 641, 698, 766, 772, 785, 1102, 1330
Bst6I	CTCTTC	1 cut(s)	977
BstAFI	CTTAAG	1 cut(s)	410
BstAUI	TGTACA	2 cut(s)	994, 1390
BstBI	TTCGAA	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	1149, 1350
BstDEI	CTNAG	6 cut(s)	315, 325, 446, 743, 939, 1453
BstF5I	GGATG	3 cut(s)	463, 873, 1087
BstH2I	RGCGCY	1 cut(s)	1355
BstHHI	GCGC	2 cut(s)	1196, 1354
BstKTI	GATC	8 cut(s)	28, 118, 409, 477, 505, 1108, 1165, 1313
BstMAI	GTCTC	2 cut(s)	1462, 1467
BstMBI	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
BstNI	CCWGG	1 cut(s)	1370
BstNSI	RCATGY	1 cut(s)	1151
BstPAI	GACNNNNGTC	1 cut(s)	1236
BstSCI	CCNGG	2 cut(s)	1027, 1368
BstSFI	CTRYAG	1 cut(s)	948
BstSLI	GKGCMC	1 cut(s)	1225
BstX2I	RGATCY	2 cut(s)	25, 406
BstYI	RGATCY	2 cut(s)	25, 406
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	582, 1316
BtsCI	GGATG	3 cut(s)	463, 873, 1087
BtsI	GCAGTG	3 cut(s)	127, 1223, 1527
BtsIMutI	CAGTG	8 cut(s)	127, 151, 484, 720, 790, 1098, 1223, 1527
Cac8I	GCNNGC	2 cut(s)	1149, 1350
CciI	TCATGA	3 cut(s)	166, 667, 1357
CfoI	GCGC	2 cut(s)	1196, 1354
Cfr13I	GGNCC	1 cut(s)	195
CsiI	ACCWGGT	1 cut(s)	1368
Csp6I	GTAC	5 cut(s)	329, 594, 734, 995, 1391
CviAII	CATG	9 cut(s)	108, 167, 668, 1148, 1160, 1229, 1304, 1358, 1499
CviQI	GTAC	5 cut(s)	329, 594, 734, 995, 1391
DdeI	CTNAG	6 cut(s)	315, 325, 446, 743, 939, 1453
DpnI	GATC	8 cut(s)	27, 117, 408, 476, 504, 1107, 1164, 1312
DpnII	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Ecl136II	GAGCTC	1 cut(s)	1452
Eco24I	GRGCYC	1 cut(s)	1454
Eco47I	GGWCC	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	1353
Eco53kI	GAGCTC	1 cut(s)	1452
Eco57I	CTGAAG	2 cut(s)	180, 744
Eco81I	CCTNAGG	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	834
EcoICRI	GAGCTC	1 cut(s)	1452
EcoRII	CCWGG	1 cut(s)	1368
EcoT38I	GRGCYC	1 cut(s)	1454
Esp3I	CGTCTC	1 cut(s)	1467
FaeI	CATG	9 cut(s)	111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
FalI	AAGNNNNNCTT	4 cut(s)	198, 230, 1035, 1067
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	9 cut(s)	107, 166, 667, 1147, 1159, 1228, 1303, 1357, 1498
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	2 cut(s)	378, 636
FokI	GGATG	3 cut(s)	470, 860, 1094
FriOI	GRGCYC	1 cut(s)	1454
FspBI	CTAG	5 cut(s)	177, 810, 1073, 1091, 1466
GlaI	GCGC	2 cut(s)	1195, 1353
GsaI	CCCAGC	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	1355
HaeIII	GGCC	2 cut(s)	582, 1316
HapII	CCGG	4 cut(s)	130, 266, 299, 1028
HhaI	GCGC	2 cut(s)	1196, 1354
Hin1II	CATG	9 cut(s)	111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
Hin6I	GCGC	2 cut(s)	1194, 1352
HinP1I	GCGC	2 cut(s)	1194, 1352
HincII	GTYRAC	3 cut(s)	285, 718, 1096
HindII	GTYRAC	3 cut(s)	285, 718, 1096
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	8 cut(s)	63, 141, 260, 278, 985, 1427, 1475, 1517
HpaII	CCGG	4 cut(s)	130, 266, 299, 1028
HphI	GGTGA	7 cut(s)	39, 280, 331, 512, 710, 835, 1051
Hpy166II	GTNNAC	8 cut(s)	285, 322, 379, 637, 718, 781, 995, 1096
Hpy188I	TCNGA	4 cut(s)	115, 160, 942, 1287
Hpy8I	GTNNAC	8 cut(s)	285, 322, 379, 637, 718, 781, 995, 1096
Hpy99I	CGWCG	1 cut(s)	1242
HpyAV	CCTTC	3 cut(s)	943, 1106, 1432
HpyCH4III	ACNGT	8 cut(s)	289, 641, 698, 766, 772, 785, 1102, 1330
HpyCH4V	TGCA	9 cut(s)	152, 418, 461, 869, 950, 1202, 1228, 1303, 1398
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
HpyF3I	CTNAG	6 cut(s)	315, 325, 446, 743, 939, 1453
Hsp92II	CATG	9 cut(s)	111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
HspAI	GCGC	2 cut(s)	1194, 1352
Kzo9I	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
LmnI	GCTCC	3 cut(s)	4, 1387, 1441
LweI	GCATC	3 cut(s)	106, 448, 796
MabI	ACCWGGT	1 cut(s)	1368
MaeI	CTAG	5 cut(s)	177, 810, 1073, 1091, 1466
MaeIII	GTNAC	5 cut(s)	766, 1122, 1256, 1291, 1324
MalI	GATC	8 cut(s)	27, 117, 408, 476, 504, 1107, 1164, 1312
MboI	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
MboII	GAAGA	2 cut(s)	484, 994
MflI	RGATCY	2 cut(s)	25, 406
MhlI	GDGCHC	2 cut(s)	1225, 1454
MlyI	GAGTC	4 cut(s)	150, 287, 994, 1526
MmeI	TCCRAC	1 cut(s)	736
MroXI	GAANNNNTTC	2 cut(s)	438, 487
MseI	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
MspA1I	CMGCKG	4 cut(s)	233, 455, 650, 953
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	4 cut(s)	130, 266, 299, 1028
MspR9I	CCNGG	2 cut(s)	1029, 1370
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	1370
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 236, 461, 656
NciI	CCSGG	1 cut(s)	1029
NdeII	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
NlaIII	CATG	9 cut(s)	111, 170, 671, 1151, 1163, 1232, 1307, 1361, 1502
NlaIV	GGNNCC	2 cut(s)	6, 196
NmuCI	GTSAC	3 cut(s)	1256, 1291, 1324
NspI	RCATGY	1 cut(s)	1151
NspV	TTCGAA	1 cut(s)	547
PaeI	GCATGC	1 cut(s)	1151
PagI	TCATGA	3 cut(s)	166, 667, 1357
PctI	GAATGC	1 cut(s)	489
PdmI	GAANNNNTTC	2 cut(s)	438, 487
PfeI	GAWTC	4 cut(s)	63, 260, 1427, 1475
PleI	GAGTC	4 cut(s)	149, 286, 993, 1525
PpsI	GAGTC	4 cut(s)	149, 286, 993, 1525
PshAI	GACNNNNGTC	1 cut(s)	1236
PshBI	ATTAAT	1 cut(s)	1131
Psp124BI	GAGCTC	1 cut(s)	1454
Psp6I	CCWGG	1 cut(s)	1368
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	1368
PspN4I	GGNNCC	2 cut(s)	6, 196
PspPI	GGNCC	1 cut(s)	195
PsrI	GAACNNNNNNTAC	2 cut(s)	751, 783
PstI	CTGCAG	1 cut(s)	952
PsuI	RGATCY	2 cut(s)	25, 406
PvuII	CAGCTG	2 cut(s)	650, 953
RsaI	GTAC	5 cut(s)	330, 595, 735, 996, 1392
RsaNI	GTAC	5 cut(s)	329, 594, 734, 995, 1391
SacI	GAGCTC	1 cut(s)	1454
SaqAI	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
Sau3AI	GATC	8 cut(s)	25, 115, 406, 474, 502, 1105, 1162, 1310
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	4 cut(s)	150, 287, 994, 1526
ScrFI	CCNGG	2 cut(s)	1029, 1370
SduI	GDGCHC	2 cut(s)	1225, 1454
SexAI	ACCWGGT	1 cut(s)	1368
SfaNI	GCATC	3 cut(s)	106, 448, 796
SfcI	CTRYAG	1 cut(s)	948
SfuI	TTCGAA	1 cut(s)	547
SinI	GGWCC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	1151
SsiI	CCGC	4 cut(s)	95, 231, 455, 1472
SspMI	CTAG	5 cut(s)	177, 810, 1073, 1091, 1466
SstI	GAGCTC	1 cut(s)	1454
StyD4I	CCNGG	2 cut(s)	1027, 1368
TaaI	ACNGT	8 cut(s)	289, 641, 698, 766, 772, 785, 1102, 1330
TaqI	TCGA	4 cut(s)	258, 432, 547, 1240
TatI	WGTACW	4 cut(s)	328, 733, 994, 1390
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	4 cut(s)	63, 260, 1427, 1475
Tru1I	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
Tru9I	TTAA	8 cut(s)	359, 390, 411, 693, 708, 846, 902, 1131
TscAI	CASTG	8 cut(s)	127, 151, 484, 727, 790, 1105, 1230, 1534
TseFI	GTSAC	3 cut(s)	1256, 1291, 1324
Tsp45I	GTSAC	3 cut(s)	1256, 1291, 1324
TspRI	CASTG	8 cut(s)	127, 151, 484, 727, 790, 1105, 1230, 1534
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	1131
XapI	RAATTY	2 cut(s)	1065, 1281
XbaI	TCTAGA	1 cut(s)	1465
XceI	RCATGY	1 cut(s)	1151
XmiI	GTMKAC	2 cut(s)	378, 636
XmnI	GAANNNNTTC	2 cut(s)	438, 487
XspI	CTAG	5 cut(s)	177, 810, 1073, 1091, 1466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.