Rroxscaffold_6G00400770

tail specific protease

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
22973079 .. 22977659
4581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00400770.1

Sequence Viewer

Length: 1419 bp
ATGGAGCCTCTTTGCCCAAACTTTGATCTCAAACCAACACCTTGCTCCCCAATTTCGCCCAGATTCCCAAAACCCACCTCACTTTTACTGCCCCCTTATCGGTTTTCATGCTCAGATCGCAGTGTGAGCCGGAAATGGAGAGTCAGTGCTGCAAAGTCTGAAGCTCATGAAAACTCTAGTCAGGAACTCTTTGGGTCCATTAGGAAAGGATTTCTTGCGTTTTCTGTTGCCGCTGCTGCCAGTTTTTCGCTCTGTTTCGATTCTCCGGCGATGGCAGAGTCGTTGACCGTTGCTTTTCCGGTTTCACGCACTACTGAGGTGAACTCAGTACAACGAACTCTTGTGGAGGCTTGGGGTTTAATTAGAGAAACATTTGTAGACCCAACATTTAATCATCAAGATTGGGATCTTAAGTTGCAGCAAACAATGGTCGAAATGTTTCCCCTTAGGTCAGCGGATGCAGCTTATATGAAGATCAGTGGAATGCTTTCTACTCTTGGTGATCCCTTTACAAAGATTATTAGTCCAAAGGAATATCAAAGTTTTCGAATTGGAAGCAATGGAAATCTACAAGGAGTTGGCCTTTTCATAGGTACTGAACCAAGAACAGGTCATCTGGTTGTTATGTCTTGTGTAGACGGTAGCCCAGCTGCTCGTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTAATGGTGAGAAGTTTAATGGTGTTGACACTGAAGCAGCAGTACAGAAGCTTAGAGGCCGAGTTGGAACAACTGTTACAGTAAAAGTTCACAGTGGCAATGATTTGGGAAGTGATGCTAGTATAAGAGAGACTGCTGCAGCTGATATGGAAAATGCTATCAAGGAAATGAAGAGTCAGGGTGTACATTCATACATACTGGATTTGAGGAACAATCCGGGGGGACTGGTGAAAGCTGGACTTGATGTTGCCCAAATTTGGCTAGACGGGGATGAAACTCTAGTCAACACTGTTGATCGGGAAGGGAACTTGTTACCAATTAATATGGTAGATGGGCATGCTATCACACATGATCCACTTGTTGTGCTTGTCAATGAGGGCAGCGCAAGTGCAAGTGAAATCTTGGCAGGGGCACTGCATGACAATCGTCGAGCTACTCTTGTGGGTCACAGAACCTTTGGGAAAGGAAAAATTCAGAGTGTCACAGAGCTGCATGATGGATCGGCCTTATTTGTCACGGTGGCAAAGTATTTATCGCCAGCGCTTCATGACATAGACCAGGTTGGCATAGCTCCTGATGTGCAATGCACAACTGAAATGCTAAATTCTCCAAAGGATTCAGTGTTGAAGGAGCAGAAGAGCTCAGTCTCGTCTCTAGAAGCAGATTCCTGTGTTTTGGTAGCAGAACATGAATTGGACATTCAAGAGTCCAAAGGCACTGCTTCTTGA

Protein Analysis

472

Amino Acids

50.88

Weight (kDa)

5.3

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 193 - 260 1.3e-10 PDZ domain
PDZ_2 PF13180 197 - 264 4.6e-08 PDZ domain
PDZ_6 PF17820 208 - 260 1.3e-09 PDZ domain
Peptidase_S41 PF03572 272 - 425 2.5e-46 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 378, 636
AciI CCGC 2 cut(s) 231, 455
AclWI GGATC 4 cut(s) 414, 497, 1037, 1198
AcsI RAATTY 3 cut(s) 945, 1161, 1294
AcuI CTGAAG 2 cut(s) 180, 744
AfaI GTAC 4 cut(s) 330, 595, 735, 876
AfeI AGCGCT 1 cut(s) 1233
AfiI CCNNNNNNNGG 3 cut(s) 99, 608, 948
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 3 cut(s) 689, 1318, 1394
AjnI CCWGG 1 cut(s) 1248
Alw21I GWGCWC 1 cut(s) 1334
Alw26I GTCTC 3 cut(s) 815, 1342, 1347
AlwI GGATC 4 cut(s) 414, 497, 1037, 1198
Aor51HI AGCGCT 1 cut(s) 1233
AoxI GGCC 3 cut(s) 580, 748, 1194
ApoI RAATTY 3 cut(s) 945, 1161, 1294
AseI ATTAAT 2 cut(s) 693, 1011
Asp700I GAANNNNTTC 2 cut(s) 438, 487
AspLEI GCGC 2 cut(s) 1076, 1234
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 4 cut(s) 331, 512, 710, 931
AsuII TTCGAA 1 cut(s) 547
AvaII GGWCC 1 cut(s) 195
AxyI CCTNAGG 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 1105
BanII GRGCYC 1 cut(s) 1334
BarI GAAGNNNNNNTAC 2 cut(s) 717, 749
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 1334
BccI CCATC 3 cut(s) 265, 1016, 1181
BcgI CGANNNNNNTGC 2 cut(s) 1097, 1131
BciT130I CCWGG 1 cut(s) 1250
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 815, 1342, 1347
BfaI CTAG 5 cut(s) 177, 810, 953, 971, 1346
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 1235
BfrI CTTAAG 1 cut(s) 410
Bme1390I CCNGG 2 cut(s) 909, 1250
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 2 cut(s) 6, 196
BmrFI CCNGG 2 cut(s) 909, 1250
BmsI GCATC 2 cut(s) 448, 796
BoxI GACNNNNGTC 1 cut(s) 1116
BplI GAGNNNNNCTC 2 cut(s) 308, 340
Bpu14I TTCGAA 1 cut(s) 547
BpuMI CCSGG 1 cut(s) 909
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 908
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 608, 948
Bse1I ACTGG 3 cut(s) 240, 894, 921
Bse21I CCTNAGG 1 cut(s) 446
Bse3DI GCAATG 3 cut(s) 565, 796, 1280
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 1250
BseDI CCNNGG 1 cut(s) 908
BseGI GGATG 2 cut(s) 463, 967
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 3 cut(s) 99, 608, 948
BseMI GCAATG 3 cut(s) 565, 796, 1280
BseMII CTCAG 4 cut(s) 126, 306, 339, 1347
BseNI ACTGG 3 cut(s) 240, 894, 921
BseSI GKGCMC 1 cut(s) 1105
BseYI CCCAGC 1 cut(s) 646
BshFI GGCC 3 cut(s) 582, 750, 1196
BsiHKAI GWGCWC 1 cut(s) 1334
BsiSI CCGG 4 cut(s) 130, 266, 299, 908
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 3 cut(s) 99, 608, 948
BsmAI GTCTC 3 cut(s) 815, 1342, 1347
BsmBI CGTCTC 1 cut(s) 1347
BsmFI GGGAC 1 cut(s) 927
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 582, 750, 1196
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 2 cut(s) 1105, 1334
Bsp1407I TGTACA 1 cut(s) 874
Bsp143I GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
BspACI CCGC 2 cut(s) 231, 455
BspANI GGCC 3 cut(s) 582, 750, 1196
BspCNI CTCAG 4 cut(s) 125, 307, 338, 1346
BspHI TCATGA 3 cut(s) 166, 667, 1237
BspLI GGNNCC 2 cut(s) 6, 196
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 4 cut(s) 414, 497, 1037, 1198
BspQI GCTCTTC 1 cut(s) 1322
BspT104I TTCGAA 1 cut(s) 547
BspTI CTTAAG 1 cut(s) 410
BsrDI GCAATG 3 cut(s) 565, 796, 1280
BsrGI TGTACA 1 cut(s) 874
BsrI ACTGG 3 cut(s) 240, 894, 921
BssECI CCNNGG 1 cut(s) 908
BssMI GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
BssSI CACGAG 1 cut(s) 654
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 7 cut(s) 289, 641, 766, 772, 785, 982, 1210
Bst6I CTCTTC 2 cut(s) 857, 1322
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 1029, 1230
BstDEI CTNAG 6 cut(s) 112, 315, 325, 446, 743, 1333
BstF5I GGATG 2 cut(s) 463, 967
BstH2I RGCGCY 1 cut(s) 1235
BstHHI GCGC 2 cut(s) 1076, 1234
BstKTI GATC 8 cut(s) 28, 118, 409, 477, 505, 988, 1045, 1193
BstMAI GTCTC 3 cut(s) 815, 1342, 1347
BstMBI GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
BstMWI GCNNNNNNNGC 5 cut(s) 117, 126, 236, 461, 656
BstNI CCWGG 1 cut(s) 1250
BstNSI RCATGY 1 cut(s) 1031
BstPAI GACNNNNGTC 1 cut(s) 1116
BstSCI CCNGG 2 cut(s) 907, 1248
BstSFI CTRYAG 1 cut(s) 828
BstSLI GKGCMC 1 cut(s) 1105
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
Bsu36I CCTNAGG 1 cut(s) 446
BsuRI GGCC 3 cut(s) 582, 750, 1196
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 463, 967
BtsI GCAGTG 3 cut(s) 127, 1103, 1407
BtsIMutI CAGTG 9 cut(s) 127, 151, 484, 720, 790, 978, 1103, 1317, 1407
Cac8I GCNNGC 2 cut(s) 1029, 1230
CciI TCATGA 3 cut(s) 166, 667, 1237
CfoI GCGC 2 cut(s) 1076, 1234
Cfr13I GGNCC 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 1248
Csp6I GTAC 4 cut(s) 329, 594, 734, 875
CviAII CATG 9 cut(s) 108, 167, 668, 1028, 1040, 1109, 1184, 1238, 1379
CviQI GTAC 4 cut(s) 329, 594, 734, 875
DdeI CTNAG 6 cut(s) 112, 315, 325, 446, 743, 1333
DpnI GATC 8 cut(s) 27, 117, 408, 476, 504, 987, 1044, 1192
DpnII GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
Eam1104I CTCTTC 2 cut(s) 857, 1322
EarI CTCTTC 2 cut(s) 857, 1322
Ecl136II GAGCTC 1 cut(s) 1332
Eco24I GRGCYC 1 cut(s) 1334
Eco47I GGWCC 1 cut(s) 195
Eco47III AGCGCT 1 cut(s) 1233
Eco53kI GAGCTC 1 cut(s) 1332
Eco57I CTGAAG 2 cut(s) 180, 744
Eco81I CCTNAGG 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 1332
EcoRII CCWGG 1 cut(s) 1248
EcoT38I GRGCYC 1 cut(s) 1334
Esp3I CGTCTC 1 cut(s) 1347
FaeI CATG 9 cut(s) 111, 170, 671, 1031, 1043, 1112, 1187, 1241, 1382
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 915, 947
FaqI GGGAC 1 cut(s) 927
FatI CATG 9 cut(s) 107, 166, 667, 1027, 1039, 1108, 1183, 1237, 1378
FblI GTMKAC 2 cut(s) 378, 636
FokI GGATG 2 cut(s) 470, 974
FriOI GRGCYC 1 cut(s) 1334
FspBI CTAG 5 cut(s) 177, 810, 953, 971, 1346
GlaI GCGC 2 cut(s) 1075, 1233
GsaI CCCAGC 1 cut(s) 650
HaeII RGCGCY 1 cut(s) 1235
HaeIII GGCC 3 cut(s) 582, 750, 1196
HapII CCGG 4 cut(s) 130, 266, 299, 908
HhaI GCGC 2 cut(s) 1076, 1234
Hin1II CATG 9 cut(s) 111, 170, 671, 1031, 1043, 1112, 1187, 1241, 1382
Hin6I GCGC 2 cut(s) 1074, 1232
HinP1I GCGC 2 cut(s) 1074, 1232
HincII GTYRAC 3 cut(s) 285, 718, 976
HindII GTYRAC 3 cut(s) 285, 718, 976
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 8 cut(s) 63, 141, 260, 278, 865, 1307, 1355, 1397
HpaII CCGG 4 cut(s) 130, 266, 299, 908
HphI GGTGA 4 cut(s) 331, 512, 710, 931
Hpy166II GTNNAC 8 cut(s) 285, 322, 379, 637, 718, 781, 875, 976
Hpy188I TCNGA 3 cut(s) 115, 160, 1167
Hpy8I GTNNAC 8 cut(s) 285, 322, 379, 637, 718, 781, 875, 976
Hpy99I CGWCG 1 cut(s) 1122
HpyAV CCTTC 2 cut(s) 986, 1312
HpyCH4III ACNGT 7 cut(s) 289, 641, 766, 772, 785, 982, 1210
HpyCH4V TGCA 9 cut(s) 152, 418, 461, 830, 1082, 1108, 1183, 1273, 1278
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 126, 236, 461, 656
HpyF3I CTNAG 6 cut(s) 112, 315, 325, 446, 743, 1333
Hsp92II CATG 9 cut(s) 111, 170, 671, 1031, 1043, 1112, 1187, 1241, 1382
HspAI GCGC 2 cut(s) 1074, 1232
Kzo9I GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
LguI GCTCTTC 1 cut(s) 1322
LmnI GCTCC 4 cut(s) 4, 50, 1267, 1321
LweI GCATC 2 cut(s) 448, 796
MabI ACCWGGT 1 cut(s) 1248
MaeI CTAG 5 cut(s) 177, 810, 953, 971, 1346
MaeIII GTNAC 5 cut(s) 766, 1002, 1136, 1171, 1204
MalI GATC 8 cut(s) 27, 117, 408, 476, 504, 987, 1044, 1192
MboI GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
MboII GAAGA 3 cut(s) 484, 874, 1339
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 1105, 1334
MluCI AATT 9 cut(s) 51, 360, 549, 690, 945, 1008, 1161, 1294, 1382
MlyI GAGTC 4 cut(s) 150, 287, 874, 1406
MmeI TCCRAC 1 cut(s) 736
MnlI CCTC 8 cut(s) 18, 88, 310, 340, 664, 740, 891, 1060
MroXI GAANNNNTTC 2 cut(s) 438, 487
MseI TTAA 6 cut(s) 359, 390, 411, 693, 708, 1011
MspA1I CMGCKG 4 cut(s) 233, 455, 650, 833
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 4 cut(s) 130, 266, 299, 908
MspR9I CCNGG 2 cut(s) 909, 1250
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1250
MwoI GCNNNNNNNGC 5 cut(s) 117, 126, 236, 461, 656
NciI CCSGG 1 cut(s) 909
NdeII GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
NlaIII CATG 9 cut(s) 111, 170, 671, 1031, 1043, 1112, 1187, 1241, 1382
NlaIV GGNNCC 2 cut(s) 6, 196
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 3 cut(s) 1136, 1171, 1204
NspI RCATGY 1 cut(s) 1031
NspV TTCGAA 1 cut(s) 547
PaeI GCATGC 1 cut(s) 1031
PagI TCATGA 3 cut(s) 166, 667, 1237
PciSI GCTCTTC 1 cut(s) 1322
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 438, 487
PfeI GAWTC 4 cut(s) 63, 260, 1307, 1355
PleI GAGTC 4 cut(s) 149, 286, 873, 1405
PpsI GAGTC 4 cut(s) 149, 286, 873, 1405
PshAI GACNNNNGTC 1 cut(s) 1116
PshBI ATTAAT 2 cut(s) 693, 1011
Psp124BI GAGCTC 1 cut(s) 1334
Psp6I CCWGG 1 cut(s) 1248
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 2 cut(s) 6, 196
PspPI GGNCC 1 cut(s) 195
PsrI GAACNNNNNNTAC 2 cut(s) 751, 783
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 1 cut(s) 406
PvuII CAGCTG 2 cut(s) 650, 833
RsaI GTAC 4 cut(s) 330, 595, 735, 876
RsaNI GTAC 4 cut(s) 329, 594, 734, 875
SacI GAGCTC 1 cut(s) 1334
SapI GCTCTTC 1 cut(s) 1322
SaqAI TTAA 6 cut(s) 359, 390, 411, 693, 708, 1011
Sau3AI GATC 8 cut(s) 25, 115, 406, 474, 502, 985, 1042, 1190
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 4 cut(s) 150, 287, 874, 1406
ScrFI CCNGG 2 cut(s) 909, 1250
SduI GDGCHC 2 cut(s) 1105, 1334
SexAI ACCWGGT 1 cut(s) 1248
SfaNI GCATC 2 cut(s) 448, 796
SfcI CTRYAG 1 cut(s) 828
SfuI TTCGAA 1 cut(s) 547
SinI GGWCC 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SphI GCATGC 1 cut(s) 1031
Sse9I AATT 9 cut(s) 51, 360, 549, 690, 945, 1008, 1161, 1294, 1382
SsiI CCGC 2 cut(s) 231, 455
SspMI CTAG 5 cut(s) 177, 810, 953, 971, 1346
SstI GAGCTC 1 cut(s) 1334
StyD4I CCNGG 2 cut(s) 907, 1248
TaaI ACNGT 7 cut(s) 289, 641, 766, 772, 785, 982, 1210
TaqI TCGA 4 cut(s) 258, 432, 547, 1120
TasI AATT 9 cut(s) 51, 360, 549, 690, 945, 1008, 1161, 1294, 1382
TatI WGTACW 3 cut(s) 328, 733, 874
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 4 cut(s) 63, 260, 1307, 1355
Tru1I TTAA 6 cut(s) 359, 390, 411, 693, 708, 1011
Tru9I TTAA 6 cut(s) 359, 390, 411, 693, 708, 1011
TscAI CASTG 9 cut(s) 127, 151, 484, 727, 790, 985, 1110, 1317, 1414
TseFI GTSAC 3 cut(s) 1136, 1171, 1204
Tsp45I GTSAC 3 cut(s) 1136, 1171, 1204
TspRI CASTG 9 cut(s) 127, 151, 484, 727, 790, 985, 1110, 1317, 1414
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 195
VspI ATTAAT 2 cut(s) 693, 1011
XapI RAATTY 3 cut(s) 945, 1161, 1294
XbaI TCTAGA 1 cut(s) 1345
XceI RCATGY 1 cut(s) 1031
XmiI GTMKAC 2 cut(s) 378, 636
XmnI GAANNNNTTC 2 cut(s) 438, 487
XspI CTAG 5 cut(s) 177, 810, 953, 971, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.