FvH4_6g23140

tail specific protease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
16973286 .. 16978092
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23140.t1

Sequence Viewer

Length: 1542 bp
ATGGAGCCTCTTTGCCCAAACATGGATCTCAAACCAACACCTTGCTCACCTATTTCGCCCAGATTCCCAAAACCCACCTCACTTGTAACGCCCTCGCATCGGTTTCCATGCTCAGATCGCAGTGTGAGCCTGAAATGGAGAGTCAGCTGTGCTGCAAAGGCCAAAGCTCATGAAAACACTAGTCAGGAACTCATTGGGTCCATTGGAAAAGGCTTTCTTGCGTTTTCTGTTGCCGCTGCTGCCAGTTTTTCTGTGTGTTTTGATTCTCCGGCGATGGCTGAGTCGTTGACCGTTGCTTTTCCGGTTTCTCGCACTACTGAGGTGAACTCAGTACAAAGAACTCTTGTGGAGGCTTGGGGTTTAATTAGAGAAACATTCGTAGACCCAACATTTAATCACCAAGATTGGGATCTTAAGTTGCAGCAAACAATGGTTGAAATGTTTCCTCTTAGGTCAGCGGATGCAGCTTATACGAAGATCAGTGGAATGCTTTCTACACTTGGTGATCCCTTTACGAGGATTATTAGTCCAAAGGAATATCGAAGTTTTCAAATTGGAAGCAATGGAAATTTACAAGGAGTTGGCCTTTTCATAGGTACTGAACCGAGAACAGGCCATCTGGTTGTTATGTCTTGTGTAGATGGTGGCCCAGCTGCTCGTGCTGGTATTCATGAGGGAGATGAGTTGGTTGAAATTGATGGAGAGAAGCTTAATGGTGTTGACACTGAATTAGCAGTGCAGAAACTCAGAGGTCGAGTTGGAACAACTGTTACAGTAAAAGTTCACAGTGGCAATGATTTGGAAACTGATGCTAGTGTAAGAGAGGTGAAACTACCTCGGGAGTTCATTAAGCTTTCCCCTATTTCAACCGCAACCATCCCTCATAGAACCCCAGATGGACATTTAACAAAGACGGGTTATGTGAAGCTGTCAGCCTTCTCTCAGACTGCTGCAGCTGATATGGAAAATGCTATCAAGGAAATGAAGAGTCAGGGTGTACATTCGTATATACTGGATTTGAGAAACAATCCGGGGGGACTAGTGAAAGCCGGACTTGATGTTGCCCAAATTTGGCTGGATGGGGATGAAACTCTAGTGAATACTGTTGATCGGGAAGGAAACTTGTTACCAATTAATATGGTAGATGGGCATGCTATCACCCATGATCCACTTGTTGTGCTCGTAAATGAGGGCAGCGCAAGTGCAAGTGAAATCTTGGCAGGGGCACTGCATGACAATCGTCGAGCTACTCTTGTGGGTCACAGAACCTTTGGGAAAGGAAAAATTCAGAGTGTCACTGAGTTGCATGATGGATCGGCATTATTTGTCACGGTGGCAAAGTATTTATCGCCAGCGCTTCATGACATCGACCAGGTTGGCATAGCTCCTGATGTTCAATGCACAACTGAAATGCTCAGTTCTCCAAAGGATTCAATGTCGAAGAAGCAGAACAGCCCAGTTTCATCTCTAGAAGCAGATTCCTGTGTTTTGGTAGCAGAACATGAATTGGACATTCAAGAGTCCAAAGGCACTGCTTCTTGA

Protein Analysis

514

Amino Acids

55.16

Weight (kDa)

5.68

Isoelectric Point (pI)

33.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 193 - 261 1.8e-09 PDZ domain
PDZ_2 PF13180 198 - 268 6.7e-09 PDZ domain
PDZ_6 PF17820 209 - 261 5.5e-08 PDZ domain
Peptidase_S41 PF03572 304 - 466 8.8e-51 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 381
AciI CCGC 3 cut(s) 234, 458, 870
AclWI GGATC 5 cut(s) 33, 417, 500, 1160, 1321
AcsI RAATTY 3 cut(s) 568, 1068, 1284
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 3 cut(s) 333, 598, 999
AfeI AGCGCT 1 cut(s) 1356
AfiI CCNNNNNNNGG 6 cut(s) 22, 99, 406, 516, 611, 1071
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 7 cut(s) 437, 551, 692, 867, 1397, 1434, 1517
AhlI ACTAGT 2 cut(s) 179, 1039
AjnI CCWGG 1 cut(s) 1371
Alw21I GWGCWC 1 cut(s) 1182
AlwI GGATC 5 cut(s) 33, 417, 500, 1160, 1321
Ama87I CYCGRG 1 cut(s) 837
Aor51HI AGCGCT 1 cut(s) 1356
AoxI GGCC 4 cut(s) 159, 583, 613, 646
ApeKI GCWGC 9 cut(s) 152, 236, 239, 421, 464, 653, 950, 953, 1194
ApoI RAATTY 3 cut(s) 568, 1068, 1284
AseI ATTAAT 1 cut(s) 1134
Asp700I GAANNNNTTC 2 cut(s) 441, 490
AspLEI GCGC 2 cut(s) 1199, 1357
AspS9I GGNCC 2 cut(s) 198, 647
AsuC2I CCSGG 1 cut(s) 1032
AsuHPI GGTGA 6 cut(s) 39, 334, 389, 515, 838, 1150
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 1228
BauI CACGAG 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 1182
BbvI GCAGC 9 cut(s) 139, 223, 226, 433, 476, 640, 937, 965, 1206
BccI CCATC 9 cut(s) 268, 624, 635, 692, 884, 890, 1073, 1139, 1304
BcgI CGANNNNNNTGC 2 cut(s) 1220, 1254
BciT130I CCWGG 1 cut(s) 1373
BcnI CCSGG 1 cut(s) 1032
BcuI ACTAGT 2 cut(s) 179, 1039
BfaI CTAG 5 cut(s) 180, 813, 1040, 1094, 1469
BfmI CTRYAG 1 cut(s) 951
BfoI RGCGCY 1 cut(s) 1358
BfrI CTTAAG 1 cut(s) 413
Bme1390I CCNGG 2 cut(s) 1032, 1373
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 2 cut(s) 198, 647
BmiI GGNNCC 2 cut(s) 6, 199
BmrFI CCNGG 2 cut(s) 1032, 1373
BmrI ACTGGG 1 cut(s) 1451
BmsI GCATC 3 cut(s) 106, 451, 799
BmuI ACTGGG 1 cut(s) 1451
BoxI GACNNNNGTC 1 cut(s) 1239
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpuMI CCSGG 1 cut(s) 1032
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 836, 1031
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 99, 406, 516, 611, 1071
Bse1I ACTGG 3 cut(s) 243, 1017, 1457
Bse3DI GCAATG 2 cut(s) 568, 799
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 1 cut(s) 1373
BseDI CCNNGG 2 cut(s) 836, 1031
BseGI GGATG 4 cut(s) 466, 876, 1084, 1090
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 6 cut(s) 22, 99, 406, 516, 611, 1071
BseMI GCAATG 2 cut(s) 568, 799
BseMII CTCAG 8 cut(s) 126, 270, 309, 342, 760, 956, 1290, 1429
BseNI ACTGG 3 cut(s) 243, 1017, 1457
BseSI GKGCMC 1 cut(s) 1228
BseXI GCAGC 9 cut(s) 139, 223, 226, 433, 476, 640, 937, 965, 1206
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 758
BshFI GGCC 4 cut(s) 161, 585, 615, 648
BsiHKAI GWGCWC 1 cut(s) 1182
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 4 cut(s) 269, 302, 1031, 1050
BslFI GGGAC 1 cut(s) 1050
BslI CCNNNNNNNGG 6 cut(s) 22, 99, 406, 516, 611, 1071
BsmFI GGGAC 1 cut(s) 1050
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 4 cut(s) 161, 585, 615, 648
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 1182, 1228
Bsp1407I TGTACA 1 cut(s) 997
Bsp143I GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
BspACI CCGC 3 cut(s) 234, 458, 870
BspANI GGCC 4 cut(s) 161, 585, 615, 648
BspCNI CTCAG 8 cut(s) 125, 271, 310, 341, 759, 955, 1291, 1428
BspHI TCATGA 3 cut(s) 169, 670, 1360
BspLI GGNNCC 2 cut(s) 6, 199
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 5 cut(s) 33, 417, 500, 1160, 1321
BspTI CTTAAG 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 568, 799
BsrGI TGTACA 1 cut(s) 997
BsrI ACTGG 3 cut(s) 243, 1017, 1457
BssECI CCNNGG 2 cut(s) 836, 1031
BssMI GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
BssSI CACGAG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 1373
Bst4CI ACNGT 6 cut(s) 292, 769, 775, 788, 1105, 1333
Bst6I CTCTTC 1 cut(s) 980
BstAFI CTTAAG 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 1152, 1353
BstDEI CTNAG 9 cut(s) 112, 279, 318, 328, 449, 746, 942, 1299, 1415
BstENI CCTNNNNNAGG 1 cut(s) 514
BstF5I GGATG 4 cut(s) 466, 876, 1084, 1090
BstH2I RGCGCY 1 cut(s) 1358
BstHHI GCGC 2 cut(s) 1199, 1357
BstKTI GATC 8 cut(s) 28, 118, 412, 480, 508, 1111, 1168, 1316
BstMBI GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
BstMWI GCNNNNNNNGC 6 cut(s) 117, 126, 158, 239, 464, 659
BstNI CCWGG 1 cut(s) 1373
BstNSI RCATGY 1 cut(s) 1154
BstPAI GACNNNNGTC 1 cut(s) 1239
BstSCI CCNGG 2 cut(s) 1030, 1371
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 1228
BstV1I GCAGC 9 cut(s) 139, 223, 226, 433, 476, 640, 937, 965, 1206
BstX2I RGATCY 2 cut(s) 25, 409
BstYI RGATCY 2 cut(s) 25, 409
BsuRI GGCC 4 cut(s) 161, 585, 615, 648
BtgZI GCGATG 1 cut(s) 287
BtsCI GGATG 4 cut(s) 466, 876, 1084, 1090
BtsI GCAGTG 4 cut(s) 127, 741, 1226, 1530
BtsIMutI CAGTG 8 cut(s) 127, 487, 723, 741, 793, 1226, 1296, 1530
Cac8I GCNNGC 2 cut(s) 1152, 1353
CciI TCATGA 3 cut(s) 169, 670, 1360
CfoI GCGC 2 cut(s) 1199, 1357
Cfr13I GGNCC 2 cut(s) 198, 647
CsiI ACCWGGT 1 cut(s) 1371
Csp6I GTAC 3 cut(s) 332, 597, 998
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviQI GTAC 3 cut(s) 332, 597, 998
DdeI CTNAG 9 cut(s) 112, 279, 318, 328, 449, 746, 942, 1299, 1415
DpnI GATC 8 cut(s) 27, 117, 411, 479, 507, 1110, 1167, 1315
DpnII GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 980
EarI CTCTTC 1 cut(s) 980
Eco47I GGWCC 1 cut(s) 198
Eco47III AGCGCT 1 cut(s) 1356
Eco88I CYCGRG 1 cut(s) 837
EcoNI CCTNNNNNAGG 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 1371
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 1038, 1070
FaqI GGGAC 1 cut(s) 1050
FblI GTMKAC 1 cut(s) 381
FokI GGATG 4 cut(s) 473, 863, 1091, 1097
FspBI CTAG 5 cut(s) 180, 813, 1040, 1094, 1469
GlaI GCGC 2 cut(s) 1198, 1356
GsaI CCCAGC 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 1358
HaeIII GGCC 4 cut(s) 161, 585, 615, 648
HapII CCGG 4 cut(s) 269, 302, 1031, 1050
HhaI GCGC 2 cut(s) 1199, 1357
Hin6I GCGC 2 cut(s) 1197, 1355
HinP1I GCGC 2 cut(s) 1197, 1355
HincII GTYRAC 2 cut(s) 288, 721
HindII GTYRAC 2 cut(s) 288, 721
HindIII AAGCTT 2 cut(s) 707, 851
HinfI GANTC 8 cut(s) 63, 141, 263, 281, 988, 1430, 1478, 1520
HpaII CCGG 4 cut(s) 269, 302, 1031, 1050
HphI GGTGA 6 cut(s) 39, 334, 389, 515, 838, 1150
Hpy166II GTNNAC 6 cut(s) 288, 325, 382, 721, 784, 998
Hpy188I TCNGA 4 cut(s) 115, 749, 945, 1290
Hpy8I GTNNAC 6 cut(s) 288, 325, 382, 721, 784, 998
Hpy99I CGWCG 1 cut(s) 1245
HpyAV CCTTC 2 cut(s) 946, 1109
HpyCH4III ACNGT 6 cut(s) 292, 769, 775, 788, 1105, 1333
HpyCH4V TGCA 9 cut(s) 155, 421, 464, 739, 953, 1205, 1231, 1306, 1401
HpyF10VI GCNNNNNNNGC 6 cut(s) 117, 126, 158, 239, 464, 659
HpyF3I CTNAG 9 cut(s) 112, 279, 318, 328, 449, 746, 942, 1299, 1415
HspAI GCGC 2 cut(s) 1197, 1355
Kzo9I GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
LmnI GCTCC 2 cut(s) 4, 1390
Lsp1109I GCAGC 9 cut(s) 139, 223, 226, 433, 476, 640, 937, 965, 1206
LweI GCATC 3 cut(s) 106, 451, 799
MabI ACCWGGT 1 cut(s) 1371
MaeI CTAG 5 cut(s) 180, 813, 1040, 1094, 1469
MaeIII GTNAC 6 cut(s) 85, 769, 1125, 1259, 1294, 1327
MalI GATC 8 cut(s) 27, 117, 411, 479, 507, 1110, 1167, 1315
MboI GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
MboII GAAGA 3 cut(s) 487, 997, 1453
MflI RGATCY 2 cut(s) 25, 409
MhlI GDGCHC 2 cut(s) 1182, 1228
MluCI AATT 9 cut(s) 363, 552, 568, 693, 728, 1068, 1131, 1284, 1505
MlyI GAGTC 4 cut(s) 150, 290, 997, 1529
MmeI TCCRAC 1 cut(s) 739
MroXI GAANNNNTTC 2 cut(s) 441, 490
MseI TTAA 7 cut(s) 362, 393, 414, 711, 849, 905, 1134
MspA1I CMGCKG 5 cut(s) 147, 236, 458, 653, 956
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 4 cut(s) 269, 302, 1031, 1050
MspR9I CCNGG 2 cut(s) 1032, 1373
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 1373
MwoI GCNNNNNNNGC 6 cut(s) 117, 126, 158, 239, 464, 659
NciI CCSGG 1 cut(s) 1032
NdeII GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
NlaIV GGNNCC 2 cut(s) 6, 199
NmuCI GTSAC 3 cut(s) 1259, 1294, 1327
NspI RCATGY 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 1154
PagI TCATGA 3 cut(s) 169, 670, 1360
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 2 cut(s) 441, 490
PfeI GAWTC 4 cut(s) 63, 263, 1430, 1478
PleI GAGTC 4 cut(s) 149, 289, 996, 1528
PpsI GAGTC 4 cut(s) 149, 289, 996, 1528
PshAI GACNNNNGTC 1 cut(s) 1239
PshBI ATTAAT 1 cut(s) 1134
Psp6I CCWGG 1 cut(s) 1371
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 1371
PspN4I GGNNCC 2 cut(s) 6, 199
PspPI GGNCC 2 cut(s) 198, 647
PsrI GAACNNNNNNTAC 2 cut(s) 754, 786
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 25, 409
PvuII CAGCTG 3 cut(s) 147, 653, 956
RsaI GTAC 3 cut(s) 333, 598, 999
RsaNI GTAC 3 cut(s) 332, 597, 998
SaqAI TTAA 7 cut(s) 362, 393, 414, 711, 849, 905, 1134
Sau3AI GATC 8 cut(s) 25, 115, 409, 477, 505, 1108, 1165, 1313
Sau96I GGNCC 2 cut(s) 198, 647
SchI GAGTC 4 cut(s) 150, 290, 997, 1529
ScrFI CCNGG 2 cut(s) 1032, 1373
SduI GDGCHC 2 cut(s) 1182, 1228
SexAI ACCWGGT 1 cut(s) 1371
SfaNI GCATC 3 cut(s) 106, 451, 799
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
SpeI ACTAGT 2 cut(s) 179, 1039
SphI GCATGC 1 cut(s) 1154
Sse9I AATT 9 cut(s) 363, 552, 568, 693, 728, 1068, 1131, 1284, 1505
SsiI CCGC 3 cut(s) 234, 458, 870
SspMI CTAG 5 cut(s) 180, 813, 1040, 1094, 1469
StyD4I CCNGG 2 cut(s) 1030, 1371
TaaI ACNGT 6 cut(s) 292, 769, 775, 788, 1105, 1333
TaqI TCGA 5 cut(s) 541, 754, 1243, 1368, 1439
TasI AATT 9 cut(s) 363, 552, 568, 693, 728, 1068, 1131, 1284, 1505
TatI WGTACW 2 cut(s) 331, 997
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 4 cut(s) 63, 263, 1430, 1478
Tru1I TTAA 7 cut(s) 362, 393, 414, 711, 849, 905, 1134
Tru9I TTAA 7 cut(s) 362, 393, 414, 711, 849, 905, 1134
TscAI CASTG 8 cut(s) 127, 487, 730, 741, 793, 1233, 1303, 1537
TseFI GTSAC 3 cut(s) 1259, 1294, 1327
TseI GCWGC 9 cut(s) 152, 236, 239, 421, 464, 653, 950, 953, 1194
Tsp45I GTSAC 3 cut(s) 1259, 1294, 1327
TspDTI ATGAA 9 cut(s) 186, 580, 659, 835, 998, 1101, 1349, 1452, 1518
TspRI CASTG 8 cut(s) 127, 487, 730, 741, 793, 1233, 1303, 1537
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 1134
XagI CCTNNNNNAGG 1 cut(s) 514
XapI RAATTY 3 cut(s) 568, 1068, 1284
XbaI TCTAGA 1 cut(s) 1468
XceI RCATGY 1 cut(s) 1154
XmiI GTMKAC 1 cut(s) 381
XmnI GAANNNNTTC 2 cut(s) 441, 490
XspI CTAG 5 cut(s) 180, 813, 1040, 1094, 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.