DNA-binding bromodomain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42150 AT3G57980 AT3G57980 |
| fragaria_vesca | FvH4_6g22470 |
| malus_domestica | MD12G1059100.v1.1 MD14G1058900.v1.1 |
| prunus_persica | Prupe.7G075800_v2.0.a1 |
| pyrus_communis | pycom12g05190 pycom14g04770 |
| rosa_chinensis | RchiOBHm_Chr3g0479881 |
| rosa_laevigata | RLG00000023528 |
| rosa_multiflora | Rmu_co8449113.1_g000001 Rmu_sc0003400.1_g000029 Rmu_sc0018138.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00401930 |
| rosa_rugosa | Rorug03G0179200 |
| rosa_samantha | Rh3AG230200 Rh3BG262800 Rh3CG260100 Rh3DG256200 |
| rosa_wichuraiana | Rw0G015250 Rw0G019250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1226 |
| AccI | GTMKAC | 1 cut(s) | 816 |
| AccII | CGCG | 2 cut(s) | 434, 940 |
| AciI | CCGC | 5 cut(s) | 162, 255, 434, 603, 1885 |
| AclI | AACGTT | 2 cut(s) | 331, 1497 |
| AclWI | GGATC | 4 cut(s) | 238, 503, 544, 605 |
| AcsI | RAATTY | 3 cut(s) | 25, 412, 499 |
| AcuI | CTGAAG | 3 cut(s) | 144, 893, 1583 |
| AcyI | GRCGYC | 1 cut(s) | 1223 |
| AfaI | GTAC | 4 cut(s) | 97, 154, 185, 480 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 217, 276, 533, 805 |
| AflII | CTTAAG | 1 cut(s) | 1637 |
| AgeI | ACCGGT | 1 cut(s) | 481 |
| AgsI | TTSAA | 9 cut(s) | 364, 403, 875, 1174, 1342, 1513, 1577, 1814, 1944 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 323 |
| AhlI | ACTAGT | 1 cut(s) | 1898 |
| AjnI | CCWGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1282, 1314 |
| Alw21I | GWGCWC | 3 cut(s) | 53, 66, 788 |
| Alw26I | GTCTC | 7 cut(s) | 226, 431, 803, 918, 1249, 1399, 1673 |
| AlwI | GGATC | 4 cut(s) | 238, 503, 544, 605 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 233, 1331 |
| Ama87I | CYCGRG | 1 cut(s) | 799 |
| AoxI | GGCC | 2 cut(s) | 1534, 1802 |
| ApeKI | GCWGC | 3 cut(s) | 1130, 1460, 1625 |
| ApoI | RAATTY | 3 cut(s) | 25, 412, 499 |
| AsiGI | ACCGGT | 1 cut(s) | 481 |
| AspLEI | GCGC | 3 cut(s) | 80, 201, 942 |
| AspS9I | GGNCC | 1 cut(s) | 1050 |
| AsuHPI | GGTGA | 6 cut(s) | 77, 151, 379, 844, 908, 1231 |
| AsuII | TTCGAA | 1 cut(s) | 1012 |
| AvaI | CYCGRG | 1 cut(s) | 799 |
| AvaII | GGWCC | 1 cut(s) | 1050 |
| BanII | GRGCYC | 2 cut(s) | 66, 788 |
| BbsI | GAAGAC | 1 cut(s) | 615 |
| Bbv12I | GWGCWC | 3 cut(s) | 53, 66, 788 |
| BbvI | GCAGC | 3 cut(s) | 1142, 1472, 1612 |
| BccI | CCATC | 6 cut(s) | 173, 353, 770, 1120, 1441, 1870 |
| BceAI | ACGGC | 2 cut(s) | 65, 868 |
| BciT130I | CCWGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| BcoDI | GTCTC | 7 cut(s) | 226, 431, 803, 918, 1249, 1399, 1673 |
| BcuI | ACTAGT | 1 cut(s) | 1898 |
| BfaI | CTAG | 5 cut(s) | 422, 1353, 1452, 1629, 1899 |
| BfmI | CTRYAG | 1 cut(s) | 973 |
| BfoI | RGCGCY | 1 cut(s) | 202 |
| BfrI | CTTAAG | 1 cut(s) | 1637 |
| BglII | AGATCT | 4 cut(s) | 261, 418, 864, 1313 |
| BisI | GCNGC | 4 cut(s) | 255, 1131, 1461, 1626 |
| BlsI | GCNGC | 4 cut(s) | 256, 1132, 1462, 1627 |
| Bme1390I | CCNGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| Bme18I | GGWCC | 1 cut(s) | 1050 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 323 |
| BmeT110I | CYCGRG | 1 cut(s) | 799 |
| BmgT120I | GGNCC | 1 cut(s) | 1050 |
| BmiI | GGNNCC | 1 cut(s) | 532 |
| BmrFI | CCNGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| BmrI | ACTGGG | 1 cut(s) | 1803 |
| BmsI | GCATC | 2 cut(s) | 1201, 1747 |
| BmuI | ACTGGG | 1 cut(s) | 1803 |
| BoxI | GACNNNNGTC | 1 cut(s) | 174 |
| BpiI | GAAGAC | 1 cut(s) | 615 |
| BpmI | CTGGAG | 3 cut(s) | 15, 489, 1302 |
| Bpu14I | TTCGAA | 1 cut(s) | 1012 |
| BpuEI | CTTGAG | 2 cut(s) | 179, 302 |
| BsaHI | GRCGYC | 1 cut(s) | 1223 |
| BsaI | GGTCTC | 2 cut(s) | 226, 1399 |
| BsaJI | CCNNGG | 4 cut(s) | 275, 954, 1215, 1302 |
| BsaWI | WCCGGW | 4 cut(s) | 481, 533, 594, 829 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 217, 276, 533, 805 |
| Bse118I | RCCGGY | 3 cut(s) | 481, 625, 942 |
| Bse1I | ACTGG | 4 cut(s) | 575, 1506, 1599, 1798 |
| Bse3DI | GCAATG | 1 cut(s) | 353 |
| BseBI | CCWGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| BseDI | CCNNGG | 4 cut(s) | 275, 954, 1215, 1302 |
| BseGI | GGATG | 3 cut(s) | 962, 1216, 1762 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 217, 276, 533, 805 |
| BseMI | GCAATG | 1 cut(s) | 353 |
| BseMII | CTCAG | 6 cut(s) | 399, 480, 531, 708, 893, 1110 |
| BseNI | ACTGG | 4 cut(s) | 575, 1506, 1599, 1798 |
| BseRI | GAGGAG | 7 cut(s) | 56, 59, 74, 299, 1409, 1470, 1728 |
| BseXI | GCAGC | 3 cut(s) | 1142, 1472, 1612 |
| Bsh1236I | CGCG | 2 cut(s) | 434, 940 |
| BshFI | GGCC | 2 cut(s) | 1536, 1804 |
| BshTI | ACCGGT | 1 cut(s) | 481 |
| BsiHKAI | GWGCWC | 3 cut(s) | 53, 66, 788 |
| BsiHKCI | CYCGRG | 1 cut(s) | 799 |
| BsiSI | CCGG | 7 cut(s) | 474, 482, 534, 595, 626, 830, 943 |
| BslFI | GGGAC | 2 cut(s) | 122, 1901 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 217, 276, 533, 805 |
| BsmAI | GTCTC | 7 cut(s) | 226, 431, 803, 918, 1249, 1399, 1673 |
| BsmBI | CGTCTC | 2 cut(s) | 431, 803 |
| BsmFI | GGGAC | 2 cut(s) | 122, 1901 |
| BsmI | GAATGC | 1 cut(s) | 1519 |
| BsnI | GGCC | 2 cut(s) | 1536, 1804 |
| Bso31I | GGTCTC | 2 cut(s) | 226, 1399 |
| BsoBI | CYCGRG | 1 cut(s) | 799 |
| Bsp119I | TTCGAA | 1 cut(s) | 1012 |
| Bsp1286I | GDGCHC | 3 cut(s) | 53, 66, 788 |
| BspACI | CCGC | 5 cut(s) | 162, 255, 434, 603, 1885 |
| BspANI | GGCC | 2 cut(s) | 1536, 1804 |
| BspCNI | CTCAG | 6 cut(s) | 400, 481, 532, 709, 892, 1111 |
| BspFNI | CGCG | 2 cut(s) | 434, 940 |
| BspLI | GGNNCC | 1 cut(s) | 532 |
| BspPI | GGATC | 4 cut(s) | 238, 503, 544, 605 |
| BspQI | GCTCTTC | 1 cut(s) | 389 |
| BspT104I | TTCGAA | 1 cut(s) | 1012 |
| BspTI | CTTAAG | 1 cut(s) | 1637 |
| BspTNI | GGTCTC | 2 cut(s) | 226, 1399 |
| BsrDI | GCAATG | 1 cut(s) | 353 |
| BsrFI | RCCGGY | 3 cut(s) | 481, 625, 942 |
| BsrI | ACTGG | 4 cut(s) | 575, 1506, 1599, 1798 |
| BssAI | RCCGGY | 3 cut(s) | 481, 625, 942 |
| BssECI | CCNNGG | 4 cut(s) | 275, 954, 1215, 1302 |
| BssNI | GRCGYC | 1 cut(s) | 1223 |
| BssT1I | CCWWGG | 3 cut(s) | 275, 1215, 1302 |
| Bst2UI | CCWGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| Bst6I | CTCTTC | 5 cut(s) | 271, 389, 1020, 1252, 1386 |
| BstACI | GRCGYC | 1 cut(s) | 1223 |
| BstAFI | CTTAAG | 1 cut(s) | 1637 |
| BstBI | TTCGAA | 1 cut(s) | 1012 |
| BstC8I | GCNNGC | 6 cut(s) | 76, 627, 793, 944, 1109, 1773 |
| BstDEI | CTNAG | 8 cut(s) | 408, 489, 540, 717, 879, 1119, 1227, 1440 |
| BstF5I | GGATG | 3 cut(s) | 962, 1216, 1762 |
| BstFNI | CGCG | 2 cut(s) | 434, 940 |
| BstH2I | RGCGCY | 1 cut(s) | 202 |
| BstHHI | GCGC | 3 cut(s) | 80, 201, 942 |
| BstMAI | GTCTC | 7 cut(s) | 226, 431, 803, 918, 1249, 1399, 1673 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 792, 1457 |
| BstNI | CCWGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 174 |
| BstSCI | CCNGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| BstSFI | CTRYAG | 1 cut(s) | 973 |
| BstUI | CGCG | 2 cut(s) | 434, 940 |
| BstV1I | GCAGC | 3 cut(s) | 1142, 1472, 1612 |
| BstV2I | GAAGAC | 1 cut(s) | 615 |
| BstX2I | RGATCY | 7 cut(s) | 230, 261, 418, 508, 536, 864, 1313 |
| BstYI | RGATCY | 7 cut(s) | 230, 261, 418, 508, 536, 864, 1313 |
| BsuRI | GGCC | 2 cut(s) | 1536, 1804 |
| BtgZI | GCGATG | 1 cut(s) | 1098 |
| BtsCI | GGATG | 3 cut(s) | 962, 1216, 1762 |
| BtsI | GCAGTG | 1 cut(s) | 1863 |
| BtsIMutI | CAGTG | 9 cut(s) | 453, 582, 1275, 1329, 1606, 1689, 1846, 1863, 1897 |
| Cac8I | GCNNGC | 6 cut(s) | 76, 627, 793, 944, 1109, 1773 |
| CaiI | CAGNNNCTG | 2 cut(s) | 233, 1331 |
| CfoI | GCGC | 3 cut(s) | 80, 201, 942 |
| Cfr10I | RCCGGY | 3 cut(s) | 481, 625, 942 |
| Cfr13I | GGNCC | 1 cut(s) | 1050 |
| CseI | GACGC | 1 cut(s) | 1311 |
| CsiI | ACCWGGT | 1 cut(s) | 216 |
| Csp6I | GTAC | 4 cut(s) | 96, 153, 184, 479 |
| CspAI | ACCGGT | 1 cut(s) | 481 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1582, 1617 |
| CviAII | CATG | 1 cut(s) | 105 |
| CviQI | GTAC | 4 cut(s) | 96, 153, 184, 479 |
| DdeI | CTNAG | 8 cut(s) | 408, 489, 540, 717, 879, 1119, 1227, 1440 |
| DriI | GACNNNNNGTC | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 5 cut(s) | 271, 389, 1020, 1252, 1386 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 323 |
| EarI | CTCTTC | 5 cut(s) | 271, 389, 1020, 1252, 1386 |
| EciI | GGCGGA | 1 cut(s) | 618 |
| Ecl136II | GAGCTC | 2 cut(s) | 64, 786 |
| Eco130I | CCWWGG | 3 cut(s) | 275, 1215, 1302 |
| Eco24I | GRGCYC | 2 cut(s) | 66, 788 |
| Eco31I | GGTCTC | 2 cut(s) | 226, 1399 |
| Eco47I | GGWCC | 1 cut(s) | 1050 |
| Eco53kI | GAGCTC | 2 cut(s) | 64, 786 |
| Eco57I | CTGAAG | 3 cut(s) | 144, 893, 1583 |
| Eco88I | CYCGRG | 1 cut(s) | 799 |
| EcoICRI | GAGCTC | 2 cut(s) | 64, 786 |
| EcoRI | GAATTC | 1 cut(s) | 412 |
| EcoRII | CCWGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| EcoT14I | CCWWGG | 3 cut(s) | 275, 1215, 1302 |
| EcoT38I | GRGCYC | 2 cut(s) | 66, 788 |
| ErhI | CCWWGG | 3 cut(s) | 275, 1215, 1302 |
| Esp3I | CGTCTC | 2 cut(s) | 431, 803 |
| FaeI | CATG | 1 cut(s) | 108 |
| FaiI | YATR | 6 cut(s) | 106, 132, 975, 995, 1104, 1280 |
| FaqI | GGGAC | 2 cut(s) | 122, 1901 |
| FatI | CATG | 1 cut(s) | 104 |
| FauI | CCCGC | 1 cut(s) | 1878 |
| FblI | GTMKAC | 1 cut(s) | 816 |
| Fnu4HI | GCNGC | 4 cut(s) | 255, 1131, 1461, 1626 |
| FokI | GGATG | 3 cut(s) | 949, 1223, 1769 |
| FriOI | GRGCYC | 2 cut(s) | 66, 788 |
| Fsp4HI | GCNGC | 4 cut(s) | 255, 1131, 1461, 1626 |
| FspBI | CTAG | 5 cut(s) | 422, 1353, 1452, 1629, 1899 |
| GlaI | GCGC | 3 cut(s) | 79, 200, 941 |
| GluI | GCNGC | 4 cut(s) | 255, 1131, 1461, 1626 |
| GsuI | CTGGAG | 3 cut(s) | 15, 489, 1302 |
| HaeII | RGCGCY | 1 cut(s) | 202 |
| HaeIII | GGCC | 2 cut(s) | 1536, 1804 |
| HapII | CCGG | 7 cut(s) | 474, 482, 534, 595, 626, 830, 943 |
| HgaI | GACGC | 1 cut(s) | 1311 |
| HhaI | GCGC | 3 cut(s) | 80, 201, 942 |
| Hin1I | GRCGYC | 1 cut(s) | 1223 |
| Hin1II | CATG | 1 cut(s) | 108 |
| Hin6I | GCGC | 3 cut(s) | 78, 199, 940 |
| HinP1I | GCGC | 3 cut(s) | 78, 199, 940 |
| HpaII | CCGG | 7 cut(s) | 474, 482, 534, 595, 626, 830, 943 |
| HphI | GGTGA | 6 cut(s) | 77, 151, 379, 844, 908, 1231 |
| Hpy166II | GTNNAC | 4 cut(s) | 85, 155, 580, 817 |
| Hpy188III | TCNNGA | 8 cut(s) | 32, 422, 506, 799, 901, 1064, 1156, 1174 |
| Hpy8I | GTNNAC | 4 cut(s) | 85, 155, 580, 817 |
| Hpy99I | CGWCG | 3 cut(s) | 119, 321, 620 |
| HpyAV | CCTTC | 5 cut(s) | 358, 664, 1394, 1579, 1681 |
| HpyCH4IV | ACGT | 5 cut(s) | 44, 331, 1223, 1294, 1497 |
| HpyCH4V | TGCA | 3 cut(s) | 358, 1130, 1760 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 792, 1457 |
| HpyF3I | CTNAG | 8 cut(s) | 408, 489, 540, 717, 879, 1119, 1227, 1440 |
| HpySE526I | ACGT | 5 cut(s) | 44, 331, 1223, 1294, 1497 |
| Hsp92I | GRCGYC | 1 cut(s) | 1223 |
| Hsp92II | CATG | 1 cut(s) | 108 |
| HspAI | GCGC | 3 cut(s) | 78, 199, 940 |
| KroI | GCCGGC | 2 cut(s) | 625, 942 |
| KroNI | GCCGGC | 2 cut(s) | 627, 944 |
| LguI | GCTCTTC | 1 cut(s) | 389 |
| LmnI | GCTCC | 7 cut(s) | 48, 61, 69, 303, 1457, 1488, 1715 |
| Lsp1109I | GCAGC | 3 cut(s) | 1142, 1472, 1612 |
| LweI | GCATC | 2 cut(s) | 1201, 1747 |
| MabI | ACCWGGT | 1 cut(s) | 216 |
| MaeI | CTAG | 5 cut(s) | 422, 1353, 1452, 1629, 1899 |
| MaeII | ACGT | 5 cut(s) | 44, 331, 1223, 1294, 1497 |
| MaeIII | GTNAC | 8 cut(s) | 89, 176, 212, 332, 484, 1031, 1219, 1327 |
| MfeI | CAATTG | 1 cut(s) | 1809 |
| MflI | RGATCY | 7 cut(s) | 230, 261, 418, 508, 536, 864, 1313 |
| MhlI | GDGCHC | 3 cut(s) | 53, 66, 788 |
| MluCI | AATT | 4 cut(s) | 25, 412, 499, 1809 |
| MlyI | GAGTC | 4 cut(s) | 104, 704, 737, 749 |
| MmeI | TCCRAC | 4 cut(s) | 340, 990, 1268, 1388 |
| MroNI | GCCGGC | 2 cut(s) | 625, 942 |
| MseI | TTAA | 6 cut(s) | 561, 1125, 1254, 1500, 1638, 1790 |
| MspCI | CTTAAG | 1 cut(s) | 1637 |
| MspI | CCGG | 7 cut(s) | 474, 482, 534, 595, 626, 830, 943 |
| MspR9I | CCNGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| MunI | CAATTG | 1 cut(s) | 1809 |
| Mva1269I | GAATGC | 1 cut(s) | 1519 |
| MvaI | CCWGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| MvnI | CGCG | 2 cut(s) | 434, 940 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 792, 1457 |
| NaeI | GCCGGC | 2 cut(s) | 627, 944 |
| NgoMIV | GCCGGC | 2 cut(s) | 625, 942 |
| NlaIII | CATG | 1 cut(s) | 108 |
| NlaIV | GGNNCC | 1 cut(s) | 532 |
| NmeAIII | GCCGAG | 2 cut(s) | 283, 767 |
| NmuCI | GTSAC | 4 cut(s) | 89, 176, 1219, 1327 |
| NspV | TTCGAA | 1 cut(s) | 1012 |
| PciSI | GCTCTTC | 1 cut(s) | 389 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 78, 333, 767 |
| PctI | GAATGC | 1 cut(s) | 1519 |
| PdiI | GCCGGC | 2 cut(s) | 627, 944 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PfoI | TCCNGGA | 1 cut(s) | 526 |
| PinAI | ACCGGT | 1 cut(s) | 481 |
| PkrI | GCNGC | 4 cut(s) | 256, 1132, 1462, 1627 |
| PleI | GAGTC | 4 cut(s) | 104, 704, 736, 748 |
| PpsI | GAGTC | 4 cut(s) | 104, 704, 736, 748 |
| PshAI | GACNNNNGTC | 1 cut(s) | 174 |
| Psp124BI | GAGCTC | 2 cut(s) | 66, 788 |
| Psp1406I | AACGTT | 2 cut(s) | 331, 1497 |
| Psp6I | CCWGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| PspGI | CCWGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| PspN4I | GGNNCC | 1 cut(s) | 532 |
| PspPI | GGNCC | 1 cut(s) | 1050 |
| PstNI | CAGNNNCTG | 2 cut(s) | 233, 1331 |
| PsuI | RGATCY | 7 cut(s) | 230, 261, 418, 508, 536, 864, 1313 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| RsaI | GTAC | 4 cut(s) | 97, 154, 185, 480 |
| RsaNI | GTAC | 4 cut(s) | 96, 153, 184, 479 |
| SacI | GAGCTC | 2 cut(s) | 66, 788 |
| SapI | GCTCTTC | 1 cut(s) | 389 |
| SaqAI | TTAA | 6 cut(s) | 561, 1125, 1254, 1500, 1638, 1790 |
| SatI | GCNGC | 4 cut(s) | 255, 1131, 1461, 1626 |
| Sau96I | GGNCC | 1 cut(s) | 1050 |
| SchI | GAGTC | 4 cut(s) | 104, 704, 737, 749 |
| ScrFI | CCNGG | 5 cut(s) | 218, 228, 528, 956, 1048 |
| SduI | GDGCHC | 3 cut(s) | 53, 66, 788 |
| SexAI | ACCWGGT | 1 cut(s) | 216 |
| SfaNI | GCATC | 2 cut(s) | 1201, 1747 |
| SfcI | CTRYAG | 1 cut(s) | 973 |
| SfuI | TTCGAA | 1 cut(s) | 1012 |
| SinI | GGWCC | 1 cut(s) | 1050 |
| SmlI | CTYRAG | 3 cut(s) | 194, 281, 1637 |
| SmoI | CTYRAG | 3 cut(s) | 194, 281, 1637 |
| SpeI | ACTAGT | 1 cut(s) | 1898 |
| Sse9I | AATT | 4 cut(s) | 25, 412, 499, 1809 |
| SsiI | CCGC | 5 cut(s) | 162, 255, 434, 603, 1885 |
| SspMI | CTAG | 5 cut(s) | 422, 1353, 1452, 1629, 1899 |
| SstI | GAGCTC | 2 cut(s) | 66, 788 |
| StyD4I | CCNGG | 5 cut(s) | 216, 226, 526, 954, 1046 |
| StyI | CCWWGG | 3 cut(s) | 275, 1215, 1302 |
| TaiI | ACGT | 5 cut(s) | 47, 334, 1226, 1297, 1500 |
| TaqI | TCGA | 7 cut(s) | 168, 306, 327, 743, 900, 948, 1012 |
| TasI | AATT | 4 cut(s) | 25, 412, 499, 1809 |
| TatI | WGTACW | 1 cut(s) | 183 |
| TauI | GCSGC | 1 cut(s) | 257 |
| Tru1I | TTAA | 6 cut(s) | 561, 1125, 1254, 1500, 1638, 1790 |
| Tru9I | TTAA | 6 cut(s) | 561, 1125, 1254, 1500, 1638, 1790 |
| TscAI | CASTG | 9 cut(s) | 460, 582, 1275, 1336, 1606, 1689, 1846, 1870, 1897 |
| TseFI | GTSAC | 4 cut(s) | 89, 176, 1219, 1327 |
| TseI | GCWGC | 3 cut(s) | 1130, 1460, 1625 |
| Tsp45I | GTSAC | 4 cut(s) | 89, 176, 1219, 1327 |
| TspDTI | ATGAA | 7 cut(s) | 93, 255, 324, 399, 886, 1647, 1661 |
| TspGWI | ACGGA | 3 cut(s) | 103, 259, 290 |
| TspRI | CASTG | 9 cut(s) | 460, 582, 1275, 1336, 1606, 1689, 1846, 1870, 1897 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| Vha464I | CTTAAG | 1 cut(s) | 1637 |
| VpaK11BI | GGWCC | 1 cut(s) | 1050 |
| XapI | RAATTY | 3 cut(s) | 25, 412, 499 |
| XbaI | TCTAGA | 1 cut(s) | 421 |
| XmiI | GTMKAC | 1 cut(s) | 816 |
| XspI | CTAG | 5 cut(s) | 422, 1353, 1452, 1629, 1899 |
| ZraI | GACGTC | 1 cut(s) | 1224 |