Bromodomain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42150 AT3G57980 AT3G57980 |
| fragaria_vesca | FvH4_6g22470 |
| malus_domestica | MD12G1059100.v1.1 MD14G1058900.v1.1 |
| prunus_persica | Prupe.7G075800_v2.0.a1 |
| pyrus_communis | pycom12g05190 pycom14g04770 |
| rosa_chinensis | RchiOBHm_Chr3g0479881 |
| rosa_laevigata | RLG00000023528 |
| rosa_multiflora | Rmu_co8449113.1_g000001 Rmu_sc0003400.1_g000029 Rmu_sc0018138.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00401930 |
| rosa_rugosa | Rorug03G0179200 |
| rosa_samantha | Rh3AG230200 Rh3BG262800 Rh3CG260100 Rh3DG256200 |
| rosa_wichuraiana | Rw0G015250 Rw0G019250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1119 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 345, 945 |
| AatII | GACGTC | 1 cut(s) | 265 |
| AccI | GTMKAC | 1 cut(s) | 531 |
| AccII | CGCG | 3 cut(s) | 435, 1283, 1984 |
| AccIII | TCCGGA | 2 cut(s) | 665, 949 |
| AclI | AACGTT | 1 cut(s) | 6 |
| AclWI | GGATC | 7 cut(s) | 486, 608, 1045, 1058, 1334, 1388, 1401 |
| AcoI | YGGCCR | 1 cut(s) | 825 |
| AcsI | RAATTY | 2 cut(s) | 1040, 1708 |
| AcuI | CTGAAG | 3 cut(s) | 513, 1277, 1307 |
| AcvI | CACGTG | 1 cut(s) | 117 |
| AcyI | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| AfaI | GTAC | 1 cut(s) | 1184 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 110, 932, 1725, 2037, 2061 |
| AflIII | ACRYGT | 1 cut(s) | 1138 |
| AgeI | ACCGGT | 4 cut(s) | 463, 526, 585, 700 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 586 |
| AjiI | CACGTC | 2 cut(s) | 365, 1612 |
| AjnI | CCWGG | 3 cut(s) | 249, 1101, 1389 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1751, 1783 |
| Alw21I | GWGCWC | 3 cut(s) | 129, 893, 1859 |
| AlwI | GGATC | 7 cut(s) | 486, 608, 1045, 1058, 1334, 1388, 1401 |
| Ama87I | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| Aor13HI | TCCGGA | 2 cut(s) | 665, 949 |
| AoxI | GGCC | 3 cut(s) | 825, 1278, 2051 |
| ApeKI | GCWGC | 4 cut(s) | 1194, 1464, 2009, 2066 |
| ApoI | RAATTY | 2 cut(s) | 1040, 1708 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 450, 482, 627, 659 |
| AsiGI | ACCGGT | 4 cut(s) | 463, 526, 585, 700 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1317 |
| AspLEI | GCGC | 5 cut(s) | 143, 1089, 1464, 1826, 1986 |
| AspS9I | GGNCC | 7 cut(s) | 253, 938, 947, 979, 1505, 2052, 2087 |
| AsuC2I | CCSGG | 2 cut(s) | 933, 942 |
| AsuHPI | GGTGA | 4 cut(s) | 214, 698, 775, 1606 |
| AsuNHI | GCTAGC | 1 cut(s) | 1417 |
| AvaI | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| AvaII | GGWCC | 6 cut(s) | 253, 938, 947, 979, 1505, 2087 |
| BaeGI | GKGCMC | 1 cut(s) | 116 |
| BamHI | GGATCC | 2 cut(s) | 1050, 1393 |
| BanII | GRGCYC | 3 cut(s) | 129, 893, 1859 |
| BauI | CACGAG | 1 cut(s) | 623 |
| BbrPI | CACGTG | 1 cut(s) | 117 |
| BbsI | GAAGAC | 2 cut(s) | 494, 1240 |
| Bbv12I | GWGCWC | 3 cut(s) | 129, 893, 1859 |
| BbvI | GCAGC | 4 cut(s) | 1206, 1476, 1996, 2078 |
| BccI | CCATC | 5 cut(s) | 64, 112, 222, 398, 976 |
| BceAI | ACGGC | 6 cut(s) | 128, 161, 330, 789, 1015, 2066 |
| BciT130I | CCWGG | 3 cut(s) | 251, 1103, 1391 |
| BcnI | CCSGG | 2 cut(s) | 933, 942 |
| BfaI | CTAG | 5 cut(s) | 326, 482, 914, 1418, 2103 |
| BfmI | CTRYAG | 2 cut(s) | 401, 1192 |
| BfoI | RGCGCY | 2 cut(s) | 1090, 1827 |
| BglII | AGATCT | 1 cut(s) | 1216 |
| BisI | GCNGC | 8 cut(s) | 285, 1195, 1281, 1465, 1827, 2010, 2067, 2070 |
| BlsI | GCNGC | 8 cut(s) | 286, 1196, 1282, 1466, 1828, 2011, 2068, 2071 |
| Bme1390I | CCNGG | 5 cut(s) | 251, 933, 942, 1103, 1391 |
| Bme18I | GGWCC | 6 cut(s) | 253, 938, 947, 979, 1505, 2087 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 586 |
| BmeT110I | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| BmgBI | CACGTC | 2 cut(s) | 365, 1612 |
| BmgT120I | GGNCC | 7 cut(s) | 253, 938, 947, 979, 1505, 2052, 2087 |
| BmiI | GGNNCC | 6 cut(s) | 664, 924, 1052, 1329, 1395, 1682 |
| BmrFI | CCNGG | 5 cut(s) | 251, 933, 942, 1103, 1391 |
| BmsI | GCATC | 2 cut(s) | 640, 1493 |
| BmtI | GCTAGC | 1 cut(s) | 1421 |
| BpiI | GAAGAC | 2 cut(s) | 494, 1240 |
| BpmI | CTGGAG | 1 cut(s) | 1251 |
| BpuMI | CCSGG | 2 cut(s) | 933, 942 |
| BsaAI | YACGTR | 1 cut(s) | 117 |
| BsaHI | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| BsaI | GGTCTC | 3 cut(s) | 446, 1065, 1100 |
| BsaJI | CCNNGG | 5 cut(s) | 320, 1045, 1101, 1587, 1684 |
| BsaWI | WCCGGW | 9 cut(s) | 463, 526, 585, 665, 700, 721, 949, 958, 976 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 354, 384, 722, 752, 1672, 1702 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 110, 932, 1725, 2037, 2061 |
| Bse118I | RCCGGY | 6 cut(s) | 463, 526, 585, 679, 700, 1089 |
| Bse1I | ACTGG | 2 cut(s) | 331, 1876 |
| Bse3DI | GCAATG | 2 cut(s) | 1412, 1759 |
| BseAI | TCCGGA | 2 cut(s) | 665, 949 |
| BseBI | CCWGG | 3 cut(s) | 251, 1103, 1391 |
| BseDI | CCNNGG | 5 cut(s) | 320, 1045, 1101, 1587, 1684 |
| BseGI | GGATG | 4 cut(s) | 994, 1484, 1597, 1862 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 110, 932, 1725, 2037, 2061 |
| BseMI | GCAATG | 2 cut(s) | 1412, 1759 |
| BseMII | CTCAG | 5 cut(s) | 38, 1040, 1654, 1767, 1776 |
| BseNI | ACTGG | 2 cut(s) | 331, 1876 |
| BseRI | GAGGAG | 9 cut(s) | 119, 122, 137, 300, 704, 860, 863, 1867, 1932 |
| BseSI | GKGCMC | 1 cut(s) | 116 |
| BseXI | GCAGC | 4 cut(s) | 1206, 1476, 1996, 2078 |
| BseYI | CCCAGC | 1 cut(s) | 168 |
| BsgI | GTGCAG | 1 cut(s) | 905 |
| Bsh1236I | CGCG | 3 cut(s) | 435, 1283, 1984 |
| Bsh1285I | CGRYCG | 3 cut(s) | 468, 586, 590 |
| BshFI | GGCC | 3 cut(s) | 827, 1280, 2053 |
| BshTI | ACCGGT | 4 cut(s) | 463, 526, 585, 700 |
| BsiEI | CGRYCG | 3 cut(s) | 468, 586, 590 |
| BsiHKAI | GWGCWC | 3 cut(s) | 129, 893, 1859 |
| BsiHKCI | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| BslFI | GGGAC | 5 cut(s) | 185, 868, 998, 2013, 2061 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 110, 932, 1725, 2037, 2061 |
| BsmBI | CGTCTC | 2 cut(s) | 353, 1772 |
| BsmFI | GGGAC | 5 cut(s) | 185, 868, 998, 2013, 2061 |
| BsmI | GAATGC | 1 cut(s) | 1453 |
| BsnI | GGCC | 3 cut(s) | 827, 1280, 2053 |
| Bso31I | GGTCTC | 3 cut(s) | 446, 1065, 1100 |
| BsoBI | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| Bsp1286I | GDGCHC | 4 cut(s) | 116, 129, 893, 1859 |
| Bsp13I | TCCGGA | 2 cut(s) | 665, 949 |
| Bsp143I | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| Bsp19I | CCATGG | 1 cut(s) | 1684 |
| Bsp68I | TCGCGA | 1 cut(s) | 435 |
| BspANI | GGCC | 3 cut(s) | 827, 1280, 2053 |
| BspCNI | CTCAG | 5 cut(s) | 39, 1039, 1653, 1768, 1775 |
| BspEI | TCCGGA | 2 cut(s) | 665, 949 |
| BspFNI | CGCG | 3 cut(s) | 435, 1283, 1984 |
| BspLI | GGNNCC | 6 cut(s) | 664, 924, 1052, 1329, 1395, 1682 |
| BspMAI | CTGCAG | 2 cut(s) | 405, 1196 |
| BspOI | GCTAGC | 1 cut(s) | 1421 |
| BspPI | GGATC | 7 cut(s) | 486, 608, 1045, 1058, 1334, 1388, 1401 |
| BspQI | GCTCTTC | 2 cut(s) | 1784, 1918 |
| BspTNI | GGTCTC | 3 cut(s) | 446, 1065, 1100 |
| BsrDI | GCAATG | 2 cut(s) | 1412, 1759 |
| BsrFI | RCCGGY | 6 cut(s) | 463, 526, 585, 679, 700, 1089 |
| BsrI | ACTGG | 2 cut(s) | 331, 1876 |
| BssAI | RCCGGY | 6 cut(s) | 463, 526, 585, 679, 700, 1089 |
| BssECI | CCNNGG | 5 cut(s) | 320, 1045, 1101, 1587, 1684 |
| BssMI | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| BssNI | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| BssSI | CACGAG | 1 cut(s) | 623 |
| BssT1I | CCWWGG | 2 cut(s) | 320, 1684 |
| Bst2BI | CACGAG | 1 cut(s) | 623 |
| Bst2UI | CCWGG | 3 cut(s) | 251, 1103, 1391 |
| Bst4CI | ACNGT | 1 cut(s) | 878 |
| Bst6I | CTCTTC | 5 cut(s) | 489, 495, 1784, 1844, 1918 |
| BstACI | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| BstBAI | YACGTR | 1 cut(s) | 117 |
| BstDEI | CTNAG | 5 cut(s) | 47, 1026, 1640, 1762, 1776 |
| BstDSI | CCRYGG | 1 cut(s) | 1684 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2059 |
| BstF5I | GGATG | 4 cut(s) | 994, 1484, 1597, 1862 |
| BstFNI | CGCG | 3 cut(s) | 435, 1283, 1984 |
| BstH2I | RGCGCY | 2 cut(s) | 1090, 1827 |
| BstHHI | GCGC | 5 cut(s) | 143, 1089, 1464, 1826, 1986 |
| BstKTI | GATC | 8 cut(s) | 481, 507, 616, 1053, 1219, 1342, 1396, 1975 |
| BstMBI | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| BstMCI | CGRYCG | 3 cut(s) | 468, 586, 590 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 165, 1464, 1674, 2075, 2090 |
| BstNI | CCWGG | 3 cut(s) | 251, 1103, 1391 |
| BstNSI | RCATGY | 2 cut(s) | 237, 1142 |
| BstSCI | CCNGG | 5 cut(s) | 249, 931, 940, 1101, 1389 |
| BstSFI | CTRYAG | 2 cut(s) | 401, 1192 |
| BstSLI | GKGCMC | 1 cut(s) | 116 |
| BstUI | CGCG | 3 cut(s) | 435, 1283, 1984 |
| BstV1I | GCAGC | 4 cut(s) | 1206, 1476, 1996, 2078 |
| BstV2I | GAAGAC | 2 cut(s) | 494, 1240 |
| BstX2I | RGATCY | 6 cut(s) | 478, 613, 1050, 1216, 1339, 1393 |
| BstYI | RGATCY | 6 cut(s) | 478, 613, 1050, 1216, 1339, 1393 |
| BsuRI | GGCC | 3 cut(s) | 827, 1280, 2053 |
| BtgI | CCRYGG | 1 cut(s) | 1684 |
| BtrI | CACGTC | 2 cut(s) | 365, 1612 |
| BtsCI | GGATG | 4 cut(s) | 994, 1484, 1597, 1862 |
| BtsIMutI | CAGTG | 2 cut(s) | 883, 1442 |
| BtuMI | TCGCGA | 1 cut(s) | 435 |
| CfoI | GCGC | 5 cut(s) | 143, 1089, 1464, 1826, 1986 |
| Cfr10I | RCCGGY | 6 cut(s) | 463, 526, 585, 679, 700, 1089 |
| Cfr13I | GGNCC | 7 cut(s) | 253, 938, 947, 979, 1505, 2052, 2087 |
| CpoI | CGGWCCG | 1 cut(s) | 947 |
| CseI | GACGC | 4 cut(s) | 182, 290, 527, 1000 |
| Csp6I | GTAC | 1 cut(s) | 1183 |
| CspAI | ACCGGT | 4 cut(s) | 463, 526, 585, 700 |
| CspI | CGGWCCG | 1 cut(s) | 947 |
| CviAII | CATG | 8 cut(s) | 58, 108, 234, 578, 1003, 1126, 1139, 1685 |
| CviQI | GTAC | 1 cut(s) | 1183 |
| DdeI | CTNAG | 5 cut(s) | 47, 1026, 1640, 1762, 1776 |
| DpnI | GATC | 8 cut(s) | 480, 506, 615, 1052, 1218, 1341, 1395, 1974 |
| DpnII | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 345, 945 |
| DriI | GACNNNNNGTC | 1 cut(s) | 586 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 345, 945 |
| EaeI | YGGCCR | 1 cut(s) | 825 |
| Eam1104I | CTCTTC | 5 cut(s) | 489, 495, 1784, 1844, 1918 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 586 |
| EarI | CTCTTC | 5 cut(s) | 489, 495, 1784, 1844, 1918 |
| EciI | GGCGGA | 1 cut(s) | 803 |
| Ecl136II | GAGCTC | 3 cut(s) | 127, 891, 1857 |
| Eco130I | CCWWGG | 2 cut(s) | 320, 1684 |
| Eco24I | GRGCYC | 3 cut(s) | 129, 893, 1859 |
| Eco31I | GGTCTC | 3 cut(s) | 446, 1065, 1100 |
| Eco47I | GGWCC | 6 cut(s) | 253, 938, 947, 979, 1505, 2087 |
| Eco53kI | GAGCTC | 3 cut(s) | 127, 891, 1857 |
| Eco57I | CTGAAG | 3 cut(s) | 513, 1277, 1307 |
| Eco72I | CACGTG | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 3 cut(s) | 89, 1046, 1663 |
| EcoICRI | GAGCTC | 3 cut(s) | 127, 891, 1857 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2059 |
| EcoO109I | RGGNCCY | 1 cut(s) | 253 |
| EcoRI | GAATTC | 2 cut(s) | 1040, 1708 |
| EcoRII | CCWGG | 3 cut(s) | 249, 1101, 1389 |
| EcoT14I | CCWWGG | 2 cut(s) | 320, 1684 |
| EcoT38I | GRGCYC | 3 cut(s) | 129, 893, 1859 |
| ErhI | CCWWGG | 2 cut(s) | 320, 1684 |
| Esp3I | CGTCTC | 2 cut(s) | 353, 1772 |
| FaeI | CATG | 8 cut(s) | 61, 111, 237, 581, 1006, 1129, 1142, 1688 |
| FaqI | GGGAC | 5 cut(s) | 185, 868, 998, 2013, 2061 |
| FatI | CATG | 8 cut(s) | 57, 107, 233, 577, 1002, 1125, 1138, 1684 |
| FauI | CCCGC | 3 cut(s) | 234, 676, 1006 |
| FblI | GTMKAC | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 8 cut(s) | 285, 1195, 1281, 1465, 1827, 2010, 2067, 2070 |
| FokI | GGATG | 4 cut(s) | 1001, 1471, 1604, 1849 |
| FriOI | GRGCYC | 3 cut(s) | 129, 893, 1859 |
| Fsp4HI | GCNGC | 8 cut(s) | 285, 1195, 1281, 1465, 1827, 2010, 2067, 2070 |
| FspBI | CTAG | 5 cut(s) | 326, 482, 914, 1418, 2103 |
| GlaI | GCGC | 5 cut(s) | 142, 1088, 1463, 1825, 1985 |
| GluI | GCNGC | 8 cut(s) | 285, 1195, 1281, 1465, 1827, 2010, 2067, 2070 |
| GsaI | CCCAGC | 1 cut(s) | 172 |
| GsuI | CTGGAG | 1 cut(s) | 1251 |
| HaeII | RGCGCY | 2 cut(s) | 1090, 1827 |
| HaeIII | GGCC | 3 cut(s) | 827, 1280, 2053 |
| HgaI | GACGC | 4 cut(s) | 182, 290, 527, 1000 |
| HhaI | GCGC | 5 cut(s) | 143, 1089, 1464, 1826, 1986 |
| Hin1I | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| Hin1II | CATG | 8 cut(s) | 61, 111, 237, 581, 1006, 1129, 1142, 1688 |
| Hin6I | GCGC | 5 cut(s) | 141, 1087, 1462, 1824, 1984 |
| HinP1I | GCGC | 5 cut(s) | 141, 1087, 1462, 1824, 1984 |
| HphI | GGTGA | 4 cut(s) | 214, 698, 775, 1606 |
| Hpy166II | GTNNAC | 5 cut(s) | 148, 239, 368, 532, 938 |
| Hpy8I | GTNNAC | 5 cut(s) | 148, 239, 368, 532, 938 |
| Hpy99I | CGWCG | 7 cut(s) | 182, 264, 267, 284, 305, 366, 1408 |
| HpyAV | CCTTC | 9 cut(s) | 403, 760, 787, 808, 834, 853, 1000, 1064, 1166 |
| HpyCH4III | ACNGT | 1 cut(s) | 878 |
| HpyCH4IV | ACGT | 6 cut(s) | 6, 116, 262, 364, 1403, 1611 |
| HpyCH4V | TGCA | 8 cut(s) | 23, 403, 886, 1159, 1194, 1478, 1964, 2012 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 165, 1464, 1674, 2075, 2090 |
| HpyF3I | CTNAG | 5 cut(s) | 47, 1026, 1640, 1762, 1776 |
| HpySE526I | ACGT | 6 cut(s) | 6, 116, 262, 364, 1403, 1611 |
| Hsp92I | GRCGYC | 5 cut(s) | 174, 262, 282, 519, 1011 |
| Hsp92II | CATG | 8 cut(s) | 61, 111, 237, 581, 1006, 1129, 1142, 1688 |
| HspAI | GCGC | 5 cut(s) | 141, 1087, 1462, 1824, 1984 |
| Kpn2I | TCCGGA | 2 cut(s) | 665, 949 |
| KroI | GCCGGC | 1 cut(s) | 1089 |
| KroNI | GCCGGC | 1 cut(s) | 1091 |
| Kzo9I | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| LguI | GCTCTTC | 2 cut(s) | 1784, 1918 |
| Lsp1109I | GCAGC | 4 cut(s) | 1206, 1476, 1996, 2078 |
| LweI | GCATC | 2 cut(s) | 640, 1493 |
| MaeI | CTAG | 5 cut(s) | 326, 482, 914, 1418, 2103 |
| MaeII | ACGT | 6 cut(s) | 6, 116, 262, 364, 1403, 1611 |
| MaeIII | GTNAC | 9 cut(s) | 35, 50, 333, 593, 872, 1232, 1296, 1612, 1744 |
| MalI | GATC | 8 cut(s) | 480, 506, 615, 1052, 1218, 1341, 1395, 1974 |
| MboI | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| MflI | RGATCY | 6 cut(s) | 478, 613, 1050, 1216, 1339, 1393 |
| MhlI | GDGCHC | 4 cut(s) | 116, 129, 893, 1859 |
| MluCI | AATT | 7 cut(s) | 82, 535, 1040, 1151, 1470, 1708, 1801 |
| MlyI | GAGTC | 4 cut(s) | 839, 874, 1632, 1775 |
| MmeI | TCCRAC | 6 cut(s) | 283, 385, 397, 693, 1386, 1547 |
| MroI | TCCGGA | 2 cut(s) | 665, 949 |
| MroNI | GCCGGC | 1 cut(s) | 1089 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1317 |
| MseI | TTAA | 2 cut(s) | 9, 422 |
| MslI | CAYNNNNRTG | 1 cut(s) | 106 |
| MspA1I | CMGCKG | 1 cut(s) | 2084 |
| MspR9I | CCNGG | 5 cut(s) | 251, 933, 942, 1103, 1391 |
| Mva1269I | GAATGC | 1 cut(s) | 1453 |
| MvaI | CCWGG | 3 cut(s) | 251, 1103, 1391 |
| MvnI | CGCG | 3 cut(s) | 435, 1283, 1984 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 165, 1464, 1674, 2075, 2090 |
| NaeI | GCCGGC | 1 cut(s) | 1091 |
| NciI | CCSGG | 2 cut(s) | 933, 942 |
| NcoI | CCATGG | 1 cut(s) | 1684 |
| NdeII | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| NgoMIV | GCCGGC | 1 cut(s) | 1089 |
| NheI | GCTAGC | 1 cut(s) | 1417 |
| NlaIII | CATG | 8 cut(s) | 61, 111, 237, 581, 1006, 1129, 1142, 1688 |
| NlaIV | GGNNCC | 6 cut(s) | 664, 924, 1052, 1329, 1395, 1682 |
| NmeAIII | GCCGAG | 2 cut(s) | 853, 872 |
| NmuCI | GTSAC | 4 cut(s) | 35, 50, 1612, 1744 |
| NruI | TCGCGA | 1 cut(s) | 435 |
| NspI | RCATGY | 2 cut(s) | 237, 1142 |
| PaeR7I | CTCGAG | 1 cut(s) | 1663 |
| PciI | ACATGT | 1 cut(s) | 1138 |
| PciSI | GCTCTTC | 2 cut(s) | 1784, 1918 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 141, 343, 614, 630 |
| PctI | GAATGC | 1 cut(s) | 1453 |
| PdiI | GCCGGC | 1 cut(s) | 1091 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1317 |
| PflFI | GACNNNGTC | 1 cut(s) | 176 |
| PfoI | TCCNGGA | 1 cut(s) | 249 |
| PinAI | ACCGGT | 4 cut(s) | 463, 526, 585, 700 |
| PkrI | GCNGC | 8 cut(s) | 286, 1196, 1282, 1466, 1828, 2011, 2068, 2071 |
| PleI | GAGTC | 4 cut(s) | 838, 873, 1632, 1774 |
| PmaCI | CACGTG | 1 cut(s) | 117 |
| PmlI | CACGTG | 1 cut(s) | 117 |
| PpsI | GAGTC | 4 cut(s) | 838, 873, 1632, 1774 |
| Ppu21I | YACGTR | 1 cut(s) | 117 |
| PpuMI | RGGWCCY | 1 cut(s) | 253 |
| PscI | ACATGT | 1 cut(s) | 1138 |
| PsiI | TTATAA | 1 cut(s) | 1119 |
| Psp124BI | GAGCTC | 3 cut(s) | 129, 893, 1859 |
| Psp1406I | AACGTT | 1 cut(s) | 6 |
| Psp5II | RGGWCCY | 1 cut(s) | 253 |
| Psp6I | CCWGG | 3 cut(s) | 249, 1101, 1389 |
| PspCI | CACGTG | 1 cut(s) | 117 |
| PspFI | CCCAGC | 1 cut(s) | 168 |
| PspGI | CCWGG | 3 cut(s) | 249, 1101, 1389 |
| PspN4I | GGNNCC | 6 cut(s) | 664, 924, 1052, 1329, 1395, 1682 |
| PspPI | GGNCC | 7 cut(s) | 253, 938, 947, 979, 1505, 2052, 2087 |
| PspPPI | RGGWCCY | 1 cut(s) | 253 |
| PspXI | VCTCGAGB | 1 cut(s) | 1663 |
| PstI | CTGCAG | 2 cut(s) | 405, 1196 |
| PsuI | RGATCY | 6 cut(s) | 478, 613, 1050, 1216, 1339, 1393 |
| PsyI | GACNNNGTC | 1 cut(s) | 176 |
| PvuII | CAGCTG | 1 cut(s) | 2084 |
| RruI | TCGCGA | 1 cut(s) | 435 |
| RsaI | GTAC | 1 cut(s) | 1184 |
| RsaNI | GTAC | 1 cut(s) | 1183 |
| RseI | CAYNNNNRTG | 1 cut(s) | 106 |
| Rsr2I | CGGWCCG | 1 cut(s) | 947 |
| RsrII | CGGWCCG | 1 cut(s) | 947 |
| SacI | GAGCTC | 3 cut(s) | 129, 893, 1859 |
| SapI | GCTCTTC | 2 cut(s) | 1784, 1918 |
| SaqAI | TTAA | 2 cut(s) | 9, 422 |
| SatI | GCNGC | 8 cut(s) | 285, 1195, 1281, 1465, 1827, 2010, 2067, 2070 |
| Sau3AI | GATC | 8 cut(s) | 478, 504, 613, 1050, 1216, 1339, 1393, 1972 |
| Sau96I | GGNCC | 7 cut(s) | 253, 938, 947, 979, 1505, 2052, 2087 |
| SchI | GAGTC | 4 cut(s) | 839, 874, 1632, 1775 |
| ScrFI | CCNGG | 5 cut(s) | 251, 933, 942, 1103, 1391 |
| SduI | GDGCHC | 4 cut(s) | 116, 129, 893, 1859 |
| SfaNI | GCATC | 2 cut(s) | 640, 1493 |
| SfcI | CTRYAG | 2 cut(s) | 401, 1192 |
| Sfr274I | CTCGAG | 1 cut(s) | 1663 |
| SinI | GGWCC | 6 cut(s) | 253, 938, 947, 979, 1505, 2087 |
| SlaI | CTCGAG | 1 cut(s) | 1663 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 106 |
| SmlI | CTYRAG | 1 cut(s) | 1663 |
| SmoI | CTYRAG | 1 cut(s) | 1663 |
| Sse9I | AATT | 7 cut(s) | 82, 535, 1040, 1151, 1470, 1708, 1801 |
| SspMI | CTAG | 5 cut(s) | 326, 482, 914, 1418, 2103 |
| SstI | GAGCTC | 3 cut(s) | 129, 893, 1859 |
| StyD4I | CCNGG | 5 cut(s) | 249, 931, 940, 1101, 1389 |
| StyI | CCWWGG | 2 cut(s) | 320, 1684 |
| TaaI | ACNGT | 1 cut(s) | 878 |
| TaiI | ACGT | 6 cut(s) | 9, 119, 265, 367, 1406, 1614 |
| TaqI | TCGA | 8 cut(s) | 351, 468, 507, 833, 905, 1083, 1213, 1664 |
| TaqII | GACCGA | 2 cut(s) | 470, 1047 |
| TasI | AATT | 7 cut(s) | 82, 535, 1040, 1151, 1470, 1708, 1801 |
| TauI | GCSGC | 4 cut(s) | 287, 1283, 1829, 2072 |
| Tru1I | TTAA | 2 cut(s) | 9, 422 |
| Tru9I | TTAA | 2 cut(s) | 9, 422 |
| TscAI | CASTG | 2 cut(s) | 883, 1449 |
| TseFI | GTSAC | 4 cut(s) | 35, 50, 1612, 1744 |
| TseI | GCWGC | 4 cut(s) | 1194, 1464, 2009, 2066 |
| Tsp45I | GTSAC | 4 cut(s) | 35, 50, 1612, 1744 |
| TspDTI | ATGAA | 8 cut(s) | 17, 369, 1005, 1019, 1085, 1401, 1608, 1862 |
| TspGWI | ACGGA | 2 cut(s) | 1532, 1796 |
| TspRI | CASTG | 2 cut(s) | 883, 1449 |
| Tth111I | GACNNNGTC | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 6 cut(s) | 253, 938, 947, 979, 1505, 2087 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2059 |
| XapI | RAATTY | 2 cut(s) | 1040, 1708 |
| XbaI | TCTAGA | 1 cut(s) | 481 |
| XceI | RCATGY | 2 cut(s) | 237, 1142 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1563 |
| XhoI | CTCGAG | 1 cut(s) | 1663 |
| XmiI | GTMKAC | 1 cut(s) | 531 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1317 |
| XspI | CTAG | 5 cut(s) | 326, 482, 914, 1418, 2103 |
| ZraI | GACGTC | 1 cut(s) | 263 |