Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449113.1

Orthogroup ID

OG0009263

Physical Location & Seq

Genomic Coordinates Reverse (-)

343 .. 1452

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgattcggcaacatacagattttgaattggtgcaaaccagacttaatggaggttggtactcaagctgcaagagcaaattttttagagatatcttgcttatttgtaagaatgccatagtcttcttcgggaaaagggctccagaatacacggctgcctgtgagctgcaattacttgttttaaaggagatggctcgtaaggatcgtaatcaagatccatcacctaaacaacaaactcatatgccatctaaagaagaaacgctgacaccaccagctctaccattgaagcctgaaactgaatcatcggagtcgttgctagcaaaatcaaaactatcaattccattgactgcttgtcgcaagcgcagctcaataaaggccagagcatccacctcttcttcagcaccagacataaaaaaagagcaaaagactacattattgcgtgatgtcaaaccagctataagttggaagcaaaaagaagattcctcggatgaagttgaggagcaacttcctgtcacaaagaagagaagaaaagaaagagttgggagcaattcaagaaacaactcgaacaaaaatagcaggagccgaagtgatactaagaaggagaagaatccagatgccaatgccaatgcaaatgttgtttcttcaaccagagcaatgattagtaatgagaattcagagtccatagccgagatggataagaagagcagtagtaatacaagtgggaaaaggcaaagtgcagaaaaattcttgagtagaatgaagagaagctctggatccaacaacaaatcagagacattgaaaattcctgagaatgatagcaaaggtgcagcagagcagagaaagaacggaaacatcaaagggaatgcacagaaaacagcagagcagagaaaaaatggaaatggcaaagggagtgcacagaaagaagtagcagagcagaagaaaggtggaaatggaaaaggaaatgcgcagaaagaacaatcttcacgtagaggttctggtgggagacaggctgcgaaagagcaaggaagccccacgaaaaggagcgtgggacggccctcaaagagggcagcggaaacaacgagagctgctccagctaaacggcgtagatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

369

Amino Acids

40.84

Weight (kDa)

10.29

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42150 AT3G57980 AT3G57980
fragaria_vesca	FvH4_6g22470
malus_domestica	MD12G1059100.v1.1 MD14G1058900.v1.1
prunus_persica	Prupe.7G075800_v2.0.a1
pyrus_communis	pycom12g05190 pycom14g04770
rosa_chinensis	RchiOBHm_Chr3g0479881
rosa_laevigata	RLG00000023528
rosa_multiflora	Rmu_co8449113.1_g000001 Rmu_sc0003400.1_g000029 Rmu_sc0018138.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401930
rosa_rugosa	Rorug03G0179200
rosa_samantha	Rh3AG230200 Rh3BG262800 Rh3CG260100 Rh3DG256200
rosa_wichuraiana	Rw0G015250 Rw0G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	963
AciI	CCGC	1 cut(s)	1067
AclWI	GGATC	4 cut(s)	206, 207, 765, 778
AcsI	RAATTY	4 cut(s)	77, 667, 740, 798
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	1035, 1059
AgsI	TTSAA	5 cut(s)	26, 283, 549, 642, 796
AhdI	GACNNNNNGTC	1 cut(s)	348
AluBI	AGCT	8 cut(s)	66, 163, 272, 363, 452, 765, 1082, 1091
AluI	AGCT	8 cut(s)	66, 163, 272, 363, 452, 765, 1082, 1091
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	2 cut(s)	782, 994
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	4 cut(s)	206, 207, 765, 778
AoxI	GGCC	2 cut(s)	372, 1049
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	8 cut(s)	66, 152, 163, 360, 824, 1007, 1064, 1082
ApoI	RAATTY	4 cut(s)	77, 667, 740, 798
AspLEI	GCGC	2 cut(s)	360, 964
AspS9I	GGNCC	1 cut(s)	1050
AsuHPI	GGTGA	1 cut(s)	210
AsuNHI	GCTAGC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	913
BamHI	GGATCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	8 cut(s)	53, 139, 150, 372, 836, 994, 1069, 1076
BccI	CCATC	4 cut(s)	181, 223, 250, 682
BceAI	ACGGC	2 cut(s)	165, 1064
BcoDI	GTCTC	2 cut(s)	782, 994
BfaI	CTAG	2 cut(s)	314, 1108
BisI	GCNGC	8 cut(s)	67, 153, 164, 361, 825, 1008, 1065, 1083
BlsI	GCNGC	8 cut(s)	68, 154, 165, 362, 826, 1009, 1066, 1084
BmeRI	GACNNNNNGTC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	1050
BmiI	GGNNCC	3 cut(s)	138, 578, 772
BmsI	GCATC	2 cut(s)	389, 601
BmtI	GCTAGC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	1069, 1101
BpmI	CTGGAG	2 cut(s)	123, 1071
BpuEI	CTTGAG	2 cut(s)	46, 766
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	1035, 1059
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	380, 490
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	1035, 1059
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	1 cut(s)	795
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	8 cut(s)	53, 139, 150, 372, 836, 994, 1069, 1076
BsgI	GTGCAG	2 cut(s)	753, 843
BshFI	GGCC	2 cut(s)	374, 1051
BsiHKAI	GWGCWC	1 cut(s)	913
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	2 cut(s)	1035, 1059
BsmAI	GTCTC	2 cut(s)	782, 994
BsmFI	GGGAC	1 cut(s)	1059
BsmI	GAATGC	2 cut(s)	115, 865
BsnI	GGCC	2 cut(s)	374, 1051
Bsp1286I	GDGCHC	2 cut(s)	139, 913
Bsp143I	GATC	3 cut(s)	199, 211, 770
BspACI	CCGC	1 cut(s)	1067
BspANI	GGCC	2 cut(s)	374, 1051
BspCNI	CTCAG	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	138, 578, 772
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	206, 207, 765, 778
BspQI	GCTCTTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	657
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	199, 211, 770
Bst6I	CTCTTC	4 cut(s)	394, 512, 692, 752
BstBAI	YACGTR	1 cut(s)	983
BstC8I	GCNNGC	2 cut(s)	315, 356
BstDEI	CTNAG	2 cut(s)	591, 804
BstENI	CCTNNNNNAGG	1 cut(s)	1057
BstF5I	GGATG	2 cut(s)	380, 490
BstHHI	GCGC	2 cut(s)	360, 964
BstKTI	GATC	3 cut(s)	202, 214, 773
BstMAI	GTCTC	2 cut(s)	782, 994
BstMBI	GATC	3 cut(s)	199, 211, 770
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 360, 1088
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	8 cut(s)	53, 139, 150, 372, 836, 994, 1069, 1076
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	211, 770
BstYI	RGATCY	2 cut(s)	211, 770
BsuRI	GGCC	2 cut(s)	374, 1051
BtsCI	GGATG	2 cut(s)	380, 490
Cac8I	GCNNGC	2 cut(s)	315, 356
CfoI	GCGC	2 cut(s)	360, 964
Cfr13I	GGNCC	1 cut(s)	1050
Csp6I	GTAC	1 cut(s)	58
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	591, 804
DpnI	GATC	3 cut(s)	201, 213, 772
DpnII	GATC	3 cut(s)	199, 211, 770
DraI	TTTAAA	1 cut(s)	180
DriI	GACNNNNNGTC	1 cut(s)	348
Eam1104I	CTCTTC	4 cut(s)	394, 512, 692, 752
Eam1105I	GACNNNNNGTC	1 cut(s)	348
EarI	CTCTTC	4 cut(s)	394, 512, 692, 752
Eco24I	GRGCYC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	1057
EcoRI	GAATTC	1 cut(s)	667
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	139
FaiI	YATR	7 cut(s)	15, 116, 237, 239, 407, 455, 680
FaqI	GGGAC	1 cut(s)	1059
FauNDI	CATATG	1 cut(s)	237
Fnu4HI	GCNGC	8 cut(s)	67, 153, 164, 361, 825, 1008, 1065, 1083
FokI	GGATG	2 cut(s)	367, 497
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	8 cut(s)	67, 153, 164, 361, 825, 1008, 1065, 1083
FspBI	CTAG	2 cut(s)	314, 1108
FspI	TGCGCA	1 cut(s)	963
GlaI	GCGC	2 cut(s)	359, 963
GluI	GCNGC	8 cut(s)	67, 153, 164, 361, 825, 1008, 1065, 1083
GsuI	CTGGAG	2 cut(s)	123, 1071
HaeIII	GGCC	2 cut(s)	374, 1051
HhaI	GCGC	2 cut(s)	360, 964
Hin6I	GCGC	2 cut(s)	358, 962
HinP1I	GCGC	2 cut(s)	358, 962
HinfI	GANTC	6 cut(s)	4, 296, 305, 476, 604, 674
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	911
Hpy188I	TCNGA	4 cut(s)	304, 484, 673, 787
Hpy188III	TCNNGA	8 cut(s)	127, 140, 209, 549, 608, 745, 768, 803
Hpy8I	GTNNAC	1 cut(s)	911
HpyAV	CCTTC	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	982
HpyCH4V	TGCA	8 cut(s)	34, 69, 166, 626, 734, 824, 863, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 360, 1088
HpyF3I	CTNAG	2 cut(s)	591, 804
HpySE526I	ACGT	1 cut(s)	982
HspAI	GCGC	2 cut(s)	358, 962
Kzo9I	GATC	3 cut(s)	199, 211, 770
LguI	GCTCTTC	1 cut(s)	692
LmnI	GCTCC	6 cut(s)	142, 496, 540, 576, 1038, 1090
Lsp1109I	GCAGC	8 cut(s)	53, 139, 150, 372, 836, 994, 1069, 1076
LweI	GCATC	2 cut(s)	389, 601
MaeI	CTAG	2 cut(s)	314, 1108
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	201, 213, 772
MboI	GATC	3 cut(s)	199, 211, 770
MflI	RGATCY	2 cut(s)	211, 770
MhlI	GDGCHC	2 cut(s)	139, 913
MluCI	AATT	8 cut(s)	26, 77, 167, 333, 544, 667, 740, 798
MlyI	GAGTC	2 cut(s)	314, 683
MmeI	TCCRAC	2 cut(s)	440, 798
MnlI	CCTC	7 cut(s)	44, 397, 487, 490, 980, 1053, 1063
MseI	TTAA	2 cut(s)	45, 179
MspA1I	CMGCKG	1 cut(s)	1067
Mva1269I	GAATGC	2 cut(s)	115, 865
MwoI	GCNNNNNNNGC	3 cut(s)	72, 360, 1088
NdeI	CATATG	1 cut(s)	237
NdeII	GATC	3 cut(s)	199, 211, 770
NheI	GCTAGC	1 cut(s)	313
NlaIV	GGNNCC	3 cut(s)	138, 578, 772
NmeAIII	GCCGAG	1 cut(s)	709
NmuCI	GTSAC	1 cut(s)	508
NsbI	TGCGCA	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	2 cut(s)	115, 865
PfeI	GAWTC	4 cut(s)	4, 296, 476, 604
PkrI	GCNGC	8 cut(s)	68, 154, 165, 362, 826, 1009, 1066, 1084
PleI	GAGTC	2 cut(s)	313, 682
PpsI	GAGTC	2 cut(s)	313, 682
Ppu21I	YACGTR	1 cut(s)	983
PspN4I	GGNNCC	3 cut(s)	138, 578, 772
PspPI	GGNCC	1 cut(s)	1050
PsuI	RGATCY	2 cut(s)	211, 770
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	45, 179
SatI	GCNGC	8 cut(s)	67, 153, 164, 361, 825, 1008, 1065, 1083
Sau3AI	GATC	3 cut(s)	199, 211, 770
Sau96I	GGNCC	1 cut(s)	1050
SchI	GAGTC	2 cut(s)	314, 683
SduI	GDGCHC	2 cut(s)	139, 913
SfaNI	GCATC	2 cut(s)	389, 601
SmlI	CTYRAG	2 cut(s)	61, 745
SmoI	CTYRAG	2 cut(s)	61, 745
Sse9I	AATT	8 cut(s)	26, 77, 167, 333, 544, 667, 740, 798
SsiI	CCGC	1 cut(s)	1067
SspMI	CTAG	2 cut(s)	314, 1108
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	1 cut(s)	560
TasI	AATT	8 cut(s)	26, 77, 167, 333, 544, 667, 740, 798
TfiI	GAWTC	4 cut(s)	4, 296, 476, 604
Tru1I	TTAA	2 cut(s)	45, 179
Tru9I	TTAA	2 cut(s)	45, 179
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	8 cut(s)	66, 152, 163, 360, 824, 1007, 1064, 1082
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	501, 770
TspGWI	ACGGA	1 cut(s)	858
VneI	GTGCAC	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	1057
XapI	RAATTY	4 cut(s)	77, 667, 740, 798
XcmI	CCANNNNNNNNNTGG	2 cut(s)	456, 685
XspI	CTAG	2 cut(s)	314, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.