Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018138.1

Orthogroup ID

OG0009263

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1583

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018138.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggataagcccaattttccggagaaacaaaccaccgcaaccacaacaacatggacgacgtgggaggagctcctcctcgcctgcgccgtccaccgctacggcactcagagctgggactccgtcgccgcccagctccgcaagcgcagttccaatctccaccacctcactcctcagatatgcaaacacaagttccacgacctccgacgccgcttcaaccaccaccacgacgccgccgtcggcgacggcgacgacgcagcatcctcccctattccatggctcgatcagttgcgacaacaacgcctcgatgaactccggcgcgaggtccaacgctccgacgtctccatcgtgtctctgcaatcgaaggtggagagattgaaagaagtgcgcgaaaagttggatctggataagagcggagaggaacaagagatcaaagacaaatccgtcgagccggaaaatgtcgccgagaaagaggtttccgagcgtaatgatggccggtctttcgacgaatccaacaccacagatccgaaacctgagattcctgaaaccggagtcgacgcggcggagaaagaatcggaaccggtcgaaccggccgccggggagatcggagcggtcgagaagtcgagtaacccggtggtggtggaggactcgtgtaatgggagttccgattcggtggtgaaggaagcgccggttgctgagtcggagaaggcgaactcgggcgagttgagggaatcggtggcggagtcgaagggtacgaaggagagtcggagtagcagtgaggttcagagctcggcgagtttgtcgaggaaattagggccagaactgaagccgagcgaaccggtcgaaccggaccaggaggaccaatctcccgccatgaatcagatcccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.74

Weight (kDa)

4.9

Isoelectric Point (pI)

66.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42150 AT3G57980 AT3G57980
fragaria_vesca	FvH4_6g22470
malus_domestica	MD12G1059100.v1.1 MD14G1058900.v1.1
prunus_persica	Prupe.7G075800_v2.0.a1
pyrus_communis	pycom12g05190 pycom14g04770
rosa_chinensis	RchiOBHm_Chr3g0479881
rosa_laevigata	RLG00000023528
rosa_multiflora	Rmu_co8449113.1_g000001 Rmu_sc0003400.1_g000029 Rmu_sc0018138.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401930
rosa_rugosa	Rorug03G0179200
rosa_samantha	Rh3AG230200 Rh3BG262800 Rh3CG260100 Rh3DG256200
rosa_wichuraiana	Rw0G015250 Rw0G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	233, 440
AatII	GACGTC	1 cut(s)	339
AccBSI	CCGCTC	2 cut(s)	411, 608
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	3 cut(s)	318, 387, 557
AccIII	TCCGGA	1 cut(s)	19
AclWI	GGATC	3 cut(s)	405, 515, 874
AcoI	YGGCCR	2 cut(s)	490, 588
AcuI	CTGAAG	1 cut(s)	842
AcyI	GRCGYC	3 cut(s)	205, 228, 336
AfaI	GTAC	1 cut(s)	751
AfiI	CCNNNNNNNGG	4 cut(s)	319, 545, 593, 634
AgeI	ACCGGT	2 cut(s)	577, 835
AgsI	TTSAA	2 cut(s)	214, 376
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	4 cut(s)	70, 111, 133, 786
AluI	AGCT	4 cut(s)	70, 111, 133, 786
Alw21I	GWGCWC	2 cut(s)	72, 788
Alw26I	GTCTC	2 cut(s)	343, 354
AlwI	GGATC	3 cut(s)	405, 515, 874
Ama87I	CYCGRG	1 cut(s)	712
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	3 cut(s)	490, 588, 812
ApeKI	GCWGC	1 cut(s)	254
AsiGI	ACCGGT	2 cut(s)	577, 835
AspLEI	GCGC	5 cut(s)	86, 144, 318, 387, 685
AspS9I	GGNCC	4 cut(s)	322, 812, 847, 856
AsuC2I	CCSGG	2 cut(s)	595, 629
AsuHPI	GGTGA	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	712
AvaII	GGWCC	3 cut(s)	322, 847, 856
BanII	GRGCYC	2 cut(s)	72, 788
BauI	CACGAG	1 cut(s)	646
Bbv12I	GWGCWC	2 cut(s)	72, 788
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	350, 482
BceAI	ACGGC	4 cut(s)	71, 115, 218, 259
BciT130I	CCWGG	1 cut(s)	851
BcnI	CCSGG	2 cut(s)	595, 629
BcoDI	GTCTC	2 cut(s)	343, 354
BfoI	RGCGCY	1 cut(s)	686
BisI	GCNGC	6 cut(s)	126, 208, 231, 255, 558, 591
BlsI	GCNGC	6 cut(s)	127, 209, 232, 256, 559, 592
Bme1390I	CCNGG	3 cut(s)	595, 629, 851
Bme18I	GGWCC	3 cut(s)	322, 847, 856
BmeT110I	CYCGRG	1 cut(s)	712
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	4 cut(s)	322, 812, 847, 856
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	3 cut(s)	595, 629, 851
BmsI	GCATC	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	595, 629
BsaHI	GRCGYC	3 cut(s)	205, 228, 336
BsaJI	CCNNGG	2 cut(s)	272, 594
BsaWI	WCCGGW	5 cut(s)	19, 545, 577, 835, 844
BsaXI	ACNNNNNCTCC	4 cut(s)	632, 662, 757, 787
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 545, 593, 634
Bse118I	RCCGGY	5 cut(s)	492, 577, 586, 685, 835
BseAI	TCCGGA	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	2 cut(s)	272, 594
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	4 cut(s)	319, 545, 593, 634
BseMII	CTCAG	4 cut(s)	119, 185, 522, 684
BseRI	GAGGAG	4 cut(s)	62, 65, 80, 159
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	2 cut(s)	111, 129
Bsh1236I	CGCG	3 cut(s)	318, 387, 557
Bsh1285I	CGRYCG	4 cut(s)	582, 591, 612, 840
BshFI	GGCC	3 cut(s)	492, 590, 814
BshTI	ACCGGT	2 cut(s)	577, 835
BsiEI	CGRYCG	4 cut(s)	582, 591, 612, 840
BsiHKAI	GWGCWC	2 cut(s)	72, 788
BsiHKCI	CYCGRG	1 cut(s)	712
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	4 cut(s)	319, 545, 593, 634
BsmAI	GTCTC	2 cut(s)	343, 354
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	492, 590, 814
BsoBI	CYCGRG	1 cut(s)	712
Bsp1286I	GDGCHC	2 cut(s)	72, 788
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
Bsp19I	CCATGG	1 cut(s)	272
BspANI	GGCC	3 cut(s)	492, 590, 814
BspCNI	CTCAG	4 cut(s)	118, 184, 523, 685
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	3 cut(s)	318, 387, 557
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	3 cut(s)	405, 515, 874
BsrBI	CCGCTC	2 cut(s)	411, 608
BsrFI	RCCGGY	5 cut(s)	492, 577, 586, 685, 835
BssAI	RCCGGY	5 cut(s)	492, 577, 586, 685, 835
BssECI	CCNNGG	2 cut(s)	272, 594
BssMI	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
BssNI	GRCGYC	3 cut(s)	205, 228, 336
BssSI	CACGAG	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	646
Bst2UI	CCWGG	1 cut(s)	851
BstACI	GRCGYC	3 cut(s)	205, 228, 336
BstC8I	GCNNGC	2 cut(s)	82, 140
BstDEI	CTNAG	4 cut(s)	105, 171, 531, 693
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	257
BstFNI	CGCG	3 cut(s)	318, 387, 557
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	5 cut(s)	86, 144, 318, 387, 685
BstKTI	GATC	6 cut(s)	283, 400, 429, 523, 603, 882
BstMAI	GTCTC	2 cut(s)	343, 354
BstMBI	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
BstMCI	CGRYCG	4 cut(s)	582, 591, 612, 840
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 139, 689
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	3 cut(s)	593, 627, 849
BstUI	CGCG	3 cut(s)	318, 387, 557
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	3 cut(s)	397, 520, 879
BstYI	RGATCY	3 cut(s)	397, 520, 879
BstZI	CGGCCG	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	492, 590, 814
BtgI	CCRYGG	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	257
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	82, 140
CfoI	GCGC	5 cut(s)	86, 144, 318, 387, 685
Cfr10I	RCCGGY	5 cut(s)	492, 577, 586, 685, 835
Cfr13I	GGNCC	4 cut(s)	322, 812, 847, 856
CseI	GACGC	4 cut(s)	213, 236, 260, 563
Csp6I	GTAC	1 cut(s)	750
CspAI	ACCGGT	2 cut(s)	577, 835
CviAII	CATG	3 cut(s)	51, 273, 871
CviQI	GTAC	1 cut(s)	750
DdeI	CTNAG	4 cut(s)	105, 171, 531, 693
DpnI	GATC	6 cut(s)	282, 399, 428, 522, 602, 881
DpnII	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
DrdI	GACNNNNNNGTC	2 cut(s)	233, 440
DseDI	GACNNNNNNGTC	2 cut(s)	233, 440
EaeI	YGGCCR	2 cut(s)	490, 588
EagI	CGGCCG	1 cut(s)	588
EciI	GGCGGA	2 cut(s)	575, 752
Ecl136II	GAGCTC	2 cut(s)	70, 786
EclXI	CGGCCG	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	272
Eco24I	GRGCYC	2 cut(s)	72, 788
Eco47I	GGWCC	3 cut(s)	322, 847, 856
Eco52I	CGGCCG	1 cut(s)	588
Eco53kI	GAGCTC	2 cut(s)	70, 786
Eco57I	CTGAAG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	712
EcoICRI	GAGCTC	2 cut(s)	70, 786
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	2 cut(s)	72, 788
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	3 cut(s)	54, 276, 874
FaiI	YATR	4 cut(s)	52, 178, 274, 872
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	3 cut(s)	50, 272, 870
FauI	CCCGC	1 cut(s)	874
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	6 cut(s)	126, 208, 231, 255, 558, 591
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	72, 788
Fsp4HI	GCNGC	6 cut(s)	126, 208, 231, 255, 558, 591
GlaI	GCGC	5 cut(s)	85, 143, 317, 386, 684
GluI	GCNGC	6 cut(s)	126, 208, 231, 255, 558, 591
GsaI	CCCAGC	2 cut(s)	115, 133
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	3 cut(s)	492, 590, 814
HgaI	GACGC	4 cut(s)	213, 236, 260, 563
HhaI	GCGC	5 cut(s)	86, 144, 318, 387, 685
Hin1I	GRCGYC	3 cut(s)	205, 228, 336
Hin1II	CATG	3 cut(s)	54, 276, 874
Hin6I	GCGC	5 cut(s)	84, 142, 316, 385, 683
HinP1I	GCGC	5 cut(s)	84, 142, 316, 385, 683
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HphI	GGTGA	1 cut(s)	685
Hpy166II	GTNNAC	2 cut(s)	91, 553
Hpy188III	TCNNGA	4 cut(s)	20, 401, 539, 613
Hpy8I	GTNNAC	2 cut(s)	91, 553
HpyAV	CCTTC	5 cut(s)	355, 670, 697, 739, 748
HpyCH4IV	ACGT	2 cut(s)	59, 336
HpyCH4V	TGCA	2 cut(s)	180, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 139, 689
HpyF3I	CTNAG	4 cut(s)	105, 171, 531, 693
HpySE526I	ACGT	2 cut(s)	59, 336
Hsp92I	GRCGYC	3 cut(s)	205, 228, 336
Hsp92II	CATG	3 cut(s)	54, 276, 874
HspAI	GCGC	5 cut(s)	84, 142, 316, 385, 683
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
LmnI	GCTCC	5 cut(s)	67, 75, 138, 335, 605
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	266
MaeII	ACGT	2 cut(s)	59, 336
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	6 cut(s)	282, 399, 428, 522, 602, 881
MbiI	CCGCTC	2 cut(s)	411, 608
MboI	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
MflI	RGATCY	3 cut(s)	397, 520, 879
MhlI	GDGCHC	2 cut(s)	72, 788
MluCI	AATT	2 cut(s)	13, 806
MlyI	GAGTC	6 cut(s)	110, 558, 638, 704, 749, 769
MmeI	TCCRAC	7 cut(s)	226, 349, 357, 375, 534, 678, 743
MroI	TCCGGA	1 cut(s)	19
MspR9I	CCNGG	3 cut(s)	595, 629, 851
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	3 cut(s)	318, 387, 557
MwoI	GCNNNNNNNGC	3 cut(s)	108, 139, 689
NciI	CCSGG	2 cut(s)	595, 629
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
NlaIII	CATG	3 cut(s)	54, 276, 874
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	3 cut(s)	487, 767, 852
PcsI	WCGNNNNNNNCGW	7 cut(s)	84, 231, 243, 342, 609, 704, 749
PfeI	GAWTC	6 cut(s)	506, 535, 569, 665, 728, 874
PflFI	GACNNNGTC	1 cut(s)	119
PinAI	ACCGGT	2 cut(s)	577, 835
PkrI	GCNGC	6 cut(s)	127, 209, 232, 256, 559, 592
PleI	GAGTC	6 cut(s)	110, 557, 638, 703, 748, 768
PpsI	GAGTC	6 cut(s)	110, 557, 638, 703, 748, 768
Psp124BI	GAGCTC	2 cut(s)	72, 788
Psp6I	CCWGG	1 cut(s)	849
PspFI	CCCAGC	2 cut(s)	111, 129
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	4 cut(s)	322, 812, 847, 856
PsrI	GAACNNNNNNTAC	2 cut(s)	643, 675
PsuI	RGATCY	3 cut(s)	397, 520, 879
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	751
RsaNI	GTAC	1 cut(s)	750
SacI	GAGCTC	2 cut(s)	72, 788
SalI	GTCGAC	1 cut(s)	551
SatI	GCNGC	6 cut(s)	126, 208, 231, 255, 558, 591
Sau3AI	GATC	6 cut(s)	280, 397, 426, 520, 600, 879
Sau96I	GGNCC	4 cut(s)	322, 812, 847, 856
SchI	GAGTC	6 cut(s)	110, 558, 638, 704, 749, 769
ScrFI	CCNGG	3 cut(s)	595, 629, 851
SduI	GDGCHC	2 cut(s)	72, 788
SfaNI	GCATC	1 cut(s)	266
SinI	GGWCC	3 cut(s)	322, 847, 856
Sse9I	AATT	2 cut(s)	13, 806
SstI	GAGCTC	2 cut(s)	72, 788
StyD4I	CCNGG	3 cut(s)	593, 627, 849
StyI	CCWWGG	1 cut(s)	272
TaiI	ACGT	2 cut(s)	62, 339
TasI	AATT	2 cut(s)	13, 806
TauI	GCSGC	5 cut(s)	128, 210, 233, 560, 593
TfiI	GAWTC	6 cut(s)	506, 535, 569, 665, 728, 874
TscAI	CASTG	1 cut(s)	778
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	2 cut(s)	109, 430
TspRI	CASTG	1 cut(s)	778
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	322, 847, 856
XmiI	GTMKAC	1 cut(s)	552
ZraI	GACGTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.