Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009263

Physical Location & Seq

Genomic Coordinates Forward (+)

25460299 .. 25464143

Gene Structure 3845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGAACTCCGGCGCGAGGTCCAACGCTCCGACGTCTCCATCGTGTAAAATCCGAATCCATAACAGAATCGATTTTTTTAAAAAAAATTTATTATTATTTTTCCGATTTATATTGTGGTTGCTTAGGTCTCTGCAATCGAAGGTGGAGAGATTGAAAGAAGTGCGCGAAAAATCGGATCTGGATAAGAGCGGAGAGGAACAAGAGATCAAAGACAAATCCGTCGAGCCGGAAAACACCTCGCCGGAAAATGTCGCCGAGAAAGAGGTTTCCGAGCGTAATGATGGCCGGTCTTTCGACGAGTCCAACACCACAGATCCGAAACCTGAGGTTCCCGAAACCGGAGTCGACGCGGCTGAGAAAGACGCGGAACCGGTCGAACCGGCCGCCGGGGAGATCGGAGCGGTCGAGAAGTCGAGTAACCCGGTGGTGGTGGAGGACTCGTGTAATGGGAGTTCCGATTCGGTGGTGAAGGAAGCGCCGGTTGCTGAGTCGGAGAAGGCGAACTCGGGCGAGTTGAGGGAATCGGTGGCGGAGTCGAAGGGGACGAAGGAGAGTCGGAGTAGCAGTGAGGTTCAGAGCTCGGCGAGTTTGTCGAGAAAATTAGGGCCGGAACTGAAGCCGAGGGAACCGGTCGAACCGGACCAGGAGGACCAATCTCCCGCCATGAATCAGATCCCCGTGGAATCTCAGCCGTTGGTTGATTTCCTCGGGATTCTCCGATCTCACAAGGCCGCTACGTTTTTCGAGCGCCGGCTCCAGTCCCAGGACACGTCCATTTATACCAACATGATTCGGCAACATACAGATTTTGAATTGGTGCAAACCAGACTTAATGGAGGTTGGTACTCAAGCTGCAAGAGCAAATTTTTTAGAGATATCTTGCTTATTTGTAAGAATGCCATAGTCTTCTTCGGGAAAAGGGCTCCAGAATACACGGCTGCCTGTGAGCTTCAATTACTTGTTTTAAAGGAGATGGCTCGTAAGGATCATAATCAAGATCCATCACCTAAACAAGAAACTCATATGCCATCTAAAGAAGAAACGCTGACACCACCAGCTCTACCATTGAAGCCTGAAACTGAATCATCGGAGTCGTTGCTAGCAAAATCAAAACTATCAATTCCATTGACTGCTTGTCGCAAGCGCAGCTCAATAAAGGCCAGAGCATCCACCTCTTCTTCAGCACCAGACATAAAAAAAGAGCAAAAGACTACATTATTGTGTGATGTCAAACCAGCTATAAGTTGGAAGCAAAAAGAAGATTCCTCGGATGAAGTTGAGGAGCAACTTCCTGTCACAAAGAAGAGAAGAAAAGAAAGAGTTGGGAGCAATTCAAGAAACAACTCGAACAAAAATAGCAGGAGCCGAAGTGATACTAAGAAGGAGAAGAATCCAGATGCCAATGCCAATGCAAATGTTGGTTCTTCAACCAGAGCAATGATTAGTAATGAGAATTCAGAGTCCATAGCCGAGATGGATAAGAAGAGCAGTAGTAATACAAGTGGGAAAAGGCAAAGTGCAGAAAAATTCTTGAGTAGAATGAAGAGGAGTTCTGGATCCAACAACAAATCAGAGACATTGAAAATTCGTGAGAATGATAGCAAAGGTGCAGCAGAGCAGAGAAAGAACGGAAACATCAAAGGGAATGCACAGAAAACAGCAGAGCAGAGAAAAAATGGAAATGGCAAAGGGAGTGCACAGAAAGAAGTAGCAGAGCAGAAGAAAGGTGGAAATGGAAAAGGAAATGCGCAGAAAGAACAAGCTTCACGTAGAGGTTCTGGTGGGAGACAGGCTGCGAAAGAGCAAGGAAGCCCCACGAAAAGGAGCGTGGGACGGCCCTCAAAGAGGGCAGCGGAAACAACGAGAGCTGCTCCAGCTAAACGGCGTAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

631

Amino Acids

69.68

Weight (kDa)

9.48

Isoelectric Point (pI)

66.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009263)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42150 AT3G57980 AT3G57980
fragaria_vesca	FvH4_6g22470
malus_domestica	MD12G1059100.v1.1 MD14G1058900.v1.1
prunus_persica	Prupe.7G075800_v2.0.a1
pyrus_communis	pycom12g05190 pycom14g04770
rosa_chinensis	RchiOBHm_Chr3g0479881
rosa_laevigata	RLG00000023528
rosa_multiflora	Rmu_co8449113.1_g000001 Rmu_sc0003400.1_g000029 Rmu_sc0018138.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401930
rosa_rugosa	Rorug03G0179200
rosa_samantha	Rh3AG230200 Rh3BG262800 Rh3CG260100 Rh3DG256200
rosa_wichuraiana	Rw0G015250 Rw0G019250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	1749
AccBSI	CCGCTC	2 cut(s)	189, 401
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	4 cut(s)	14, 165, 350, 365
AciI	CCGC	9 cut(s)	189, 350, 365, 384, 401, 530, 660, 732, 1853
AclWI	GGATC	7 cut(s)	183, 308, 667, 992, 993, 1551, 1564
AcoI	YGGCCR	2 cut(s)	283, 381
AcsI	RAATTY	5 cut(s)	85, 863, 1453, 1526, 1584
AcuI	CTGAAG	2 cut(s)	635, 1164
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	845
AfiI	CCNNNNNNNGG	7 cut(s)	15, 338, 386, 427, 763, 1821, 1845
AflIII	ACRYGT	1 cut(s)	768
AgeI	ACCGGT	2 cut(s)	370, 628
AgsI	TTSAA	7 cut(s)	154, 812, 953, 1069, 1335, 1428, 1582
AhdI	GACNNNNNGTC	1 cut(s)	1134
AjiI	CACGTC	1 cut(s)	771
AjnI	CCWGG	2 cut(s)	642, 762
AluBI	AGCT	9 cut(s)	579, 852, 949, 1058, 1149, 1238, 1763, 1868, 1877
AluI	AGCT	9 cut(s)	579, 852, 949, 1058, 1149, 1238, 1763, 1868, 1877
Alw21I	GWGCWC	2 cut(s)	581, 1699
Alw26I	GTCTC	4 cut(s)	39, 132, 1568, 1780
Alw44I	GTGCAC	1 cut(s)	1695
AlwI	GGATC	7 cut(s)	183, 308, 667, 992, 993, 1551, 1564
Ama87I	CYCGRG	2 cut(s)	505, 707
AoxI	GGCC	6 cut(s)	283, 381, 605, 729, 1158, 1835
ApaLI	GTGCAC	1 cut(s)	1695
ApeKI	GCWGC	7 cut(s)	852, 938, 1146, 1610, 1793, 1850, 1868
ApoI	RAATTY	5 cut(s)	85, 863, 1453, 1526, 1584
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
AsiGI	ACCGGT	2 cut(s)	370, 628
AspLEI	GCGC	6 cut(s)	14, 165, 478, 750, 1146, 1750
AspS9I	GGNCC	5 cut(s)	18, 605, 640, 649, 1836
AsuC2I	CCSGG	2 cut(s)	388, 422
AsuHPI	GGTGA	2 cut(s)	478, 996
AsuNHI	GCTAGC	1 cut(s)	1099
AvaI	CYCGRG	2 cut(s)	505, 707
AvaII	GGWCC	3 cut(s)	18, 640, 649
AxyI	CCTNAGG	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	1699
BamHI	GGATCC	1 cut(s)	1556
BanII	GRGCYC	2 cut(s)	581, 925
BauI	CACGAG	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	2 cut(s)	581, 1699
BbvI	GCAGC	7 cut(s)	839, 925, 1158, 1622, 1780, 1855, 1862
BccI	CCATC	6 cut(s)	46, 275, 967, 1009, 1036, 1468
BceAI	ACGGC	3 cut(s)	676, 951, 1850
BciT130I	CCWGG	2 cut(s)	644, 764
BcnI	CCSGG	2 cut(s)	388, 422
BcoDI	GTCTC	4 cut(s)	39, 132, 1568, 1780
BfaI	CTAG	2 cut(s)	1100, 1894
BfoI	RGCGCY	2 cut(s)	479, 751
Bme1390I	CCNGG	4 cut(s)	388, 422, 644, 764
Bme18I	GGWCC	3 cut(s)	18, 640, 649
BmeRI	GACNNNNNGTC	1 cut(s)	1134
BmeT110I	CYCGRG	2 cut(s)	505, 707
BmgBI	CACGTC	1 cut(s)	771
BmgT120I	GGNCC	5 cut(s)	18, 605, 640, 649, 1836
BmiI	GGNNCC	7 cut(s)	330, 369, 627, 755, 924, 1364, 1558
BmrFI	CCNGG	4 cut(s)	388, 422, 644, 764
BmsI	GCATC	2 cut(s)	1175, 1387
BmtI	GCTAGC	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	898
BplI	GAGNNNNNCTC	2 cut(s)	1855, 1887
BpmI	CTGGAG	3 cut(s)	740, 909, 1857
Bpu10I	CCTNAGC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	832, 1552
BpuMI	CCSGG	2 cut(s)	388, 422
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	1769
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	6 cut(s)	387, 620, 678, 706, 762, 1266
BsaWI	WCCGGW	4 cut(s)	338, 370, 628, 637
BsaXI	ACNNNNNCTCC	6 cut(s)	425, 455, 550, 580, 1354, 1384
Bsc4I	CCNNNNNNNGG	7 cut(s)	15, 338, 386, 427, 763, 1821, 1845
Bse118I	RCCGGY	6 cut(s)	285, 370, 379, 478, 628, 750
Bse1I	ACTGG	1 cut(s)	757
Bse21I	CCTNAGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	1443
Bse8I	GATNNNNATC	1 cut(s)	990
BseBI	CCWGG	2 cut(s)	644, 764
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	6 cut(s)	387, 620, 678, 706, 762, 1266
BseGI	GGATG	2 cut(s)	1166, 1276
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	7 cut(s)	15, 338, 386, 427, 763, 1821, 1845
BseMI	GCAATG	1 cut(s)	1443
BseMII	CTCAG	4 cut(s)	315, 345, 477, 701
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	2 cut(s)	1295, 1561
BseSI	GKGCMC	1 cut(s)	1699
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	7 cut(s)	839, 925, 1158, 1622, 1780, 1855, 1862
BsgI	GTGCAG	2 cut(s)	1539, 1629
Bsh1236I	CGCG	4 cut(s)	14, 165, 350, 365
Bsh1285I	CGRYCG	4 cut(s)	375, 384, 405, 633
BshFI	GGCC	6 cut(s)	285, 383, 607, 731, 1160, 1837
BshTI	ACCGGT	2 cut(s)	370, 628
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	4 cut(s)	375, 384, 405, 633
BsiHKAI	GWGCWC	2 cut(s)	581, 1699
BsiHKCI	CYCGRG	2 cut(s)	505, 707
BslFI	GGGAC	3 cut(s)	556, 745, 1845
BslI	CCNNNNNNNGG	7 cut(s)	15, 338, 386, 427, 763, 1821, 1845
BsmAI	GTCTC	4 cut(s)	39, 132, 1568, 1780
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	556, 745, 1845
BsmI	GAATGC	2 cut(s)	901, 1651
BsnI	GGCC	6 cut(s)	285, 383, 607, 731, 1160, 1837
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	2 cut(s)	505, 707
Bsp1286I	GDGCHC	3 cut(s)	581, 925, 1699
Bsp143I	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
BspACI	CCGC	9 cut(s)	189, 350, 365, 384, 401, 530, 660, 732, 1853
BspANI	GGCC	6 cut(s)	285, 383, 607, 731, 1160, 1837
BspCNI	CTCAG	4 cut(s)	316, 346, 478, 700
BspDI	ATCGAT	1 cut(s)	69
BspFNI	CGCG	4 cut(s)	14, 165, 350, 365
BspLI	GGNNCC	7 cut(s)	330, 369, 627, 755, 924, 1364, 1558
BspOI	GCTAGC	1 cut(s)	1103
BspPI	GGATC	7 cut(s)	183, 308, 667, 992, 993, 1551, 1564
BspQI	GCTCTTC	1 cut(s)	1478
BspTNI	GGTCTC	1 cut(s)	132
BsrBI	CCGCTC	2 cut(s)	189, 401
BsrDI	GCAATG	1 cut(s)	1443
BsrFI	RCCGGY	6 cut(s)	285, 370, 379, 478, 628, 750
BsrI	ACTGG	1 cut(s)	757
BssAI	RCCGGY	6 cut(s)	285, 370, 379, 478, 628, 750
BssECI	CCNNGG	6 cut(s)	387, 620, 678, 706, 762, 1266
BssMI	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
BssNI	GRCGYC	1 cut(s)	32
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	644, 764
Bst6I	CTCTTC	4 cut(s)	1180, 1298, 1478, 1538
BstACI	GRCGYC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	1769
BstC8I	GCNNGC	3 cut(s)	752, 1101, 1142
BstDEI	CTNAG	6 cut(s)	122, 324, 354, 486, 687, 1377
BstDSI	CCRYGG	1 cut(s)	678
BstENI	CCTNNNNNAGG	1 cut(s)	1843
BstF5I	GGATG	2 cut(s)	1166, 1276
BstFNI	CGCG	4 cut(s)	14, 165, 350, 365
BstH2I	RGCGCY	2 cut(s)	479, 751
BstHHI	GCGC	6 cut(s)	14, 165, 478, 750, 1146, 1750
BstKTI	GATC	9 cut(s)	178, 207, 316, 396, 675, 722, 988, 1000, 1559
BstMAI	GTCTC	4 cut(s)	39, 132, 1568, 1780
BstMBI	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
BstMCI	CGRYCG	4 cut(s)	375, 384, 405, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	482, 858, 1146, 1874
BstNI	CCWGG	2 cut(s)	644, 764
BstSCI	CCNGG	4 cut(s)	386, 420, 642, 762
BstSLI	GKGCMC	1 cut(s)	1699
BstUI	CGCG	4 cut(s)	14, 165, 350, 365
BstV1I	GCAGC	7 cut(s)	839, 925, 1158, 1622, 1780, 1855, 1862
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	5 cut(s)	175, 313, 672, 997, 1556
BstYI	RGATCY	5 cut(s)	175, 313, 672, 997, 1556
BstZI	CGGCCG	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	6 cut(s)	285, 383, 607, 731, 1160, 1837
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	771
BtsCI	GGATG	2 cut(s)	1166, 1276
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	752, 1101, 1142
CfoI	GCGC	6 cut(s)	14, 165, 478, 750, 1146, 1750
Cfr10I	RCCGGY	6 cut(s)	285, 370, 379, 478, 628, 750
Cfr13I	GGNCC	5 cut(s)	18, 605, 640, 649, 1836
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	2 cut(s)	356, 371
Csp6I	GTAC	1 cut(s)	844
CspAI	ACCGGT	2 cut(s)	370, 628
CviAII	CATG	2 cut(s)	664, 787
CviQI	GTAC	1 cut(s)	844
DdeI	CTNAG	6 cut(s)	122, 324, 354, 486, 687, 1377
DpnI	GATC	9 cut(s)	177, 206, 315, 395, 674, 721, 987, 999, 1558
DpnII	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
DraI	TTTAAA	2 cut(s)	79, 966
DrdI	GACNNNNNNGTC	1 cut(s)	218
DriI	GACNNNNNGTC	1 cut(s)	1134
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	283, 381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	4 cut(s)	1180, 1298, 1478, 1538
Eam1105I	GACNNNNNGTC	1 cut(s)	1134
EarI	CTCTTC	4 cut(s)	1180, 1298, 1478, 1538
EciI	GGCGGA	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	579
EclXI	CGGCCG	1 cut(s)	381
Eco24I	GRGCYC	2 cut(s)	581, 925
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	877
Eco47I	GGWCC	3 cut(s)	18, 640, 649
Eco52I	CGGCCG	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	579
Eco57I	CTGAAG	2 cut(s)	635, 1164
Eco81I	CCTNAGG	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	505, 707
EcoICRI	GAGCTC	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	1843
EcoRI	GAATTC	1 cut(s)	1453
EcoRII	CCWGG	2 cut(s)	642, 762
EcoRV	GATATC	1 cut(s)	877
EcoT38I	GRGCYC	2 cut(s)	581, 925
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	667, 790
FaqI	GGGAC	3 cut(s)	556, 745, 1845
FatI	CATG	2 cut(s)	663, 786
FauI	CCCGC	1 cut(s)	667
FauNDI	CATATG	1 cut(s)	1023
FblI	GTMKAC	1 cut(s)	345
FokI	GGATG	2 cut(s)	1153, 1283
FriOI	GRGCYC	2 cut(s)	581, 925
FspBI	CTAG	2 cut(s)	1100, 1894
FspI	TGCGCA	1 cut(s)	1749
GlaI	GCGC	6 cut(s)	13, 164, 477, 749, 1145, 1749
GsuI	CTGGAG	3 cut(s)	740, 909, 1857
HaeII	RGCGCY	2 cut(s)	479, 751
HaeIII	GGCC	6 cut(s)	285, 383, 607, 731, 1160, 1837
HgaI	GACGC	2 cut(s)	356, 371
HhaI	GCGC	6 cut(s)	14, 165, 478, 750, 1146, 1750
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	667, 790
Hin6I	GCGC	6 cut(s)	12, 163, 476, 748, 1144, 1748
HinP1I	GCGC	6 cut(s)	12, 163, 476, 748, 1144, 1748
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	1761
HphI	GGTGA	2 cut(s)	478, 996
Hpy166II	GTNNAC	2 cut(s)	346, 1697
Hpy8I	GTNNAC	2 cut(s)	346, 1697
Hpy99I	CGWCG	4 cut(s)	34, 224, 299, 350
HpyAV	CCTTC	6 cut(s)	133, 463, 490, 532, 541, 1375
HpyCH4IV	ACGT	4 cut(s)	32, 737, 770, 1768
HpyCH4V	TGCA	8 cut(s)	133, 820, 855, 1412, 1520, 1610, 1649, 1697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	482, 858, 1146, 1874
HpyF3I	CTNAG	6 cut(s)	122, 324, 354, 486, 687, 1377
HpySE526I	ACGT	4 cut(s)	32, 737, 770, 1768
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	667, 790
HspAI	GCGC	6 cut(s)	12, 163, 476, 748, 1144, 1748
KroI	GCCGGC	1 cut(s)	750
KroNI	GCCGGC	1 cut(s)	752
Kzo9I	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
LguI	GCTCTTC	1 cut(s)	1478
LmnI	GCTCC	9 cut(s)	31, 398, 759, 928, 1282, 1326, 1362, 1824, 1876
Lsp1109I	GCAGC	7 cut(s)	839, 925, 1158, 1622, 1780, 1855, 1862
LweI	GCATC	2 cut(s)	1175, 1387
MaeI	CTAG	2 cut(s)	1100, 1894
MaeII	ACGT	4 cut(s)	32, 737, 770, 1768
MaeIII	GTNAC	2 cut(s)	416, 1294
MalI	GATC	9 cut(s)	177, 206, 315, 395, 674, 721, 987, 999, 1558
MbiI	CCGCTC	2 cut(s)	189, 401
MboI	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
MflI	RGATCY	5 cut(s)	175, 313, 672, 997, 1556
MhlI	GDGCHC	3 cut(s)	581, 925, 1699
MlyI	GAGTC	8 cut(s)	308, 351, 431, 497, 542, 562, 1100, 1469
MmeI	TCCRAC	7 cut(s)	45, 53, 327, 471, 536, 1226, 1584
MroNI	GCCGGC	1 cut(s)	750
MseI	TTAA	3 cut(s)	78, 831, 965
MslI	CAYNNNNRTG	1 cut(s)	1219
MspA1I	CMGCKG	1 cut(s)	1853
MspR9I	CCNGG	4 cut(s)	388, 422, 644, 764
Mva1269I	GAATGC	2 cut(s)	901, 1651
MvaI	CCWGG	2 cut(s)	644, 764
MvnI	CGCG	4 cut(s)	14, 165, 350, 365
MwoI	GCNNNNNNNGC	4 cut(s)	482, 858, 1146, 1874
NaeI	GCCGGC	1 cut(s)	752
NciI	CCSGG	2 cut(s)	388, 422
NdeI	CATATG	1 cut(s)	1023
NdeII	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
NgoMIV	GCCGGC	1 cut(s)	750
NheI	GCTAGC	1 cut(s)	1099
NlaIII	CATG	2 cut(s)	667, 790
NlaIV	GGNNCC	7 cut(s)	330, 369, 627, 755, 924, 1364, 1558
NmeAIII	GCCGAG	4 cut(s)	280, 560, 645, 1495
NmuCI	GTSAC	1 cut(s)	1294
NsbI	TGCGCA	1 cut(s)	1749
PciSI	GCTCTTC	1 cut(s)	1478
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 402, 497, 542
PctI	GAATGC	2 cut(s)	901, 1651
PdiI	GCCGGC	1 cut(s)	752
PinAI	ACCGGT	2 cut(s)	370, 628
PleI	GAGTC	8 cut(s)	307, 350, 431, 496, 541, 561, 1099, 1468
PpsI	GAGTC	8 cut(s)	307, 350, 431, 496, 541, 561, 1099, 1468
Ppu21I	YACGTR	1 cut(s)	1769
Psp124BI	GAGCTC	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	642, 762
PspGI	CCWGG	2 cut(s)	642, 762
PspN4I	GGNNCC	7 cut(s)	330, 369, 627, 755, 924, 1364, 1558
PspPI	GGNCC	5 cut(s)	18, 605, 640, 649, 1836
PsrI	GAACNNNNNNTAC	2 cut(s)	436, 468
PsuI	RGATCY	5 cut(s)	175, 313, 672, 997, 1556
RsaI	GTAC	1 cut(s)	845
RsaNI	GTAC	1 cut(s)	844
RseI	CAYNNNNRTG	1 cut(s)	1219
SacI	GAGCTC	1 cut(s)	581
SalI	GTCGAC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	1478
SaqAI	TTAA	3 cut(s)	78, 831, 965
Sau3AI	GATC	9 cut(s)	175, 204, 313, 393, 672, 719, 985, 997, 1556
Sau96I	GGNCC	5 cut(s)	18, 605, 640, 649, 1836
SchI	GAGTC	8 cut(s)	308, 351, 431, 497, 542, 562, 1100, 1469
ScrFI	CCNGG	4 cut(s)	388, 422, 644, 764
SduI	GDGCHC	3 cut(s)	581, 925, 1699
SfaNI	GCATC	2 cut(s)	1175, 1387
SinI	GGWCC	3 cut(s)	18, 640, 649
SmiMI	CAYNNNNRTG	1 cut(s)	1219
SmlI	CTYRAG	2 cut(s)	847, 1531
SmoI	CTYRAG	2 cut(s)	847, 1531
SsiI	CCGC	9 cut(s)	189, 350, 365, 384, 401, 530, 660, 732, 1853
SspMI	CTAG	2 cut(s)	1100, 1894
SstI	GAGCTC	1 cut(s)	581
StyD4I	CCNGG	4 cut(s)	386, 420, 642, 762
TaiI	ACGT	4 cut(s)	35, 740, 773, 1771
TauI	GCSGC	3 cut(s)	353, 386, 734
Tru1I	TTAA	3 cut(s)	78, 831, 965
Tru9I	TTAA	3 cut(s)	78, 831, 965
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	1294
TseI	GCWGC	7 cut(s)	852, 938, 1146, 1610, 1793, 1850, 1868
Tsp45I	GTSAC	1 cut(s)	1294
TspDTI	ATGAA	4 cut(s)	17, 680, 1287, 1556
TspGWI	ACGGA	2 cut(s)	208, 1644
TspRI	CASTG	1 cut(s)	571
VneI	GTGCAC	1 cut(s)	1695
VpaK11BI	GGWCC	3 cut(s)	18, 640, 649
XagI	CCTNNNNNAGG	1 cut(s)	1843
XapI	RAATTY	5 cut(s)	85, 863, 1453, 1526, 1584
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1242, 1471
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	1100, 1894
ZraI	GACGTC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.