Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014034

Physical Location & Seq

Genomic Coordinates Forward (+)

21714911 .. 21716916

Gene Structure 2006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCATCGTAGAGCAGCAATTCAAGAATCGGATGACGAAGAAGATGAGACTTACAACGACGTCGTTCCTGAATCTCCTTCTTCTTGTGAAGACTCAAAGATCTCAAAACCAACTCCAAAGAAAAGTAGGAGGAACGTAGAGAAGAGAGTTGTCTCAGTTCCGATAGCTGACGTGGAAGGATCTAAGAGCAGAGGCGAAGTATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGACAAAAACCGATCAAAGGCTCGCCTTATCCCAGGGGATATTACAGATGTAGTAGCTCAAAAGGATGTCCGGCGAGGAAGCAGGTGGAGAGAAGCCGTGTGGACCCTTCTAAGCTTATGATTACTTACGCCTGCGACCACAATCACCCTTTCCCTTCCTCCTCCGCTAACACCAAATCCCACCACCGCTCCTCCGTCGTCCTCAAAACCGCAAAGAAAGAGGAAGAATACGAAGAGGAGGAAGAAGAACTAACCGTCACCGCCGCAGAGGAACCACCGGCGGGACTTGATCTAAGCCACGTAGACTCACCGTTGCTATTAGGCGGCTGCTACAGCGAAATCGGAGAGTTCGGGTGGTTCTACGACGCGTCGATCTCATCATCATCTGGTTCTTCGAATTTCCTCGACGTAACTCTAGAGAGAGGTTTTTCAGTAGGCCAAGAGGAAGATGAGTCTTTGTTCGGTGATCTCGGTGATTTACCTGATTGCGCCTCCGTGTTCCGCCGTGGGACTGTTGCGACGGAGGAGCAACATCGAAGATGTGATTTTGGCGCCATTCCTTTCTGTGATAGTTCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

272

Amino Acids

30.25

Weight (kDa)

5.1

Isoelectric Point (pI)

77.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	71 - 128	1.2e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58710 AT3G58710
fragaria_vesca	FvH4_6g27740 FvH4_6g27740
malus_domestica	MD09G1235100.v1.1
prunus_persica	Prupe.3G113300_v2.0.a1
pyrus_communis	pycom09g15330
rosa_chinensis	RchiOBHm_Chr2g0130891
rosa_laevigata	RLG00000019157
rosa_roxburghii	Rroxscaffold_2G00113460
rosa_rugosa	Rorug02G0293900
rosa_samantha	Rh2AG345200 Rh2BG353600 Rh2CG332200 Rh2DG371600
rosa_wichuraiana	Rw2G027440 Rw2G028060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	426
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	1 cut(s)	605
AciI	CCGC	8 cut(s)	402, 424, 447, 498, 501, 518, 561, 739
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	634
AcyI	GRCGYC	2 cut(s)	60, 789
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	219, 254, 518
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	224, 269
AluBI	AGCT	3 cut(s)	167, 294, 352
AluI	AGCT	3 cut(s)	167, 294, 352
Alw26I	GTCTC	2 cut(s)	41, 157
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	222, 673
ApeKI	GCWGC	2 cut(s)	14, 564
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	2 cut(s)	728, 791
AspS9I	GGNCC	2 cut(s)	222, 340
AsuHPI	GGTGA	5 cut(s)	374, 487, 537, 713, 722
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	788
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	26, 551
BceAI	ACGGC	2 cut(s)	318, 726
BciT130I	CCWGG	2 cut(s)	226, 271
BcoDI	GTCTC	2 cut(s)	41, 157
BfaI	CTAG	2 cut(s)	653, 813
BfmI	CTRYAG	1 cut(s)	568
BfoI	RGCGCY	1 cut(s)	792
BfuAI	ACCTGC	1 cut(s)	310
BglII	AGATCT	1 cut(s)	99
BisI	GCNGC	4 cut(s)	15, 501, 562, 565
BlsI	GCNGC	4 cut(s)	16, 502, 563, 566
Bme1390I	CCNGG	2 cut(s)	226, 271
Bme18I	GGWCC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	222, 340
BmiI	GGNNCC	3 cut(s)	342, 510, 790
BmrFI	CCNGG	2 cut(s)	226, 271
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	538
BsaHI	GRCGYC	2 cut(s)	60, 789
BsaJI	CCNNGG	3 cut(s)	269, 270, 742
BsaXI	ACNNNNNCTCC	4 cut(s)	410, 413, 440, 443
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 254, 518
Bse118I	RCCGGY	1 cut(s)	514
BseBI	CCWGG	2 cut(s)	226, 271
BseDI	CCNNGG	3 cut(s)	269, 270, 742
BseGI	GGATG	2 cut(s)	37, 308
BseLI	CCNNNNNNNGG	3 cut(s)	219, 254, 518
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	4 cut(s)	388, 418, 488, 776
BseXI	GCAGC	2 cut(s)	26, 551
Bsh1236I	CGCG	1 cut(s)	605
BshFI	GGCC	2 cut(s)	224, 675
BshNI	GGYRCC	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	308, 515
BslFI	GGGAC	2 cut(s)	534, 760
BslI	CCNNNNNNNGG	3 cut(s)	219, 254, 518
BsmAI	GTCTC	2 cut(s)	41, 157
BsmFI	GGGAC	2 cut(s)	534, 760
BsnI	GGCC	2 cut(s)	224, 675
Bsp119I	TTCGAA	1 cut(s)	632
Bsp143I	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
BspACI	CCGC	8 cut(s)	402, 424, 447, 498, 501, 518, 561, 739
BspANI	GGCC	2 cut(s)	224, 675
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	605
BspLI	GGNNCC	3 cut(s)	342, 510, 790
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	269, 270, 742
BssMI	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
BssNI	GRCGYC	2 cut(s)	60, 789
Bst2UI	CCWGG	2 cut(s)	226, 271
Bst4CI	ACNGT	4 cut(s)	210, 493, 549, 751
Bst6I	CTCTTC	2 cut(s)	137, 465
BstACI	GRCGYC	2 cut(s)	60, 789
BstBAI	YACGTR	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	260, 370
BstDEI	CTNAG	4 cut(s)	154, 183, 348, 530
BstDSI	CCRYGG	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	37, 308
BstFNI	CGCG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	792
BstHHI	GCGC	2 cut(s)	728, 791
BstKTI	GATC	6 cut(s)	102, 182, 252, 529, 612, 706
BstMAI	GTCTC	2 cut(s)	41, 157
BstMBI	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	2 cut(s)	226, 271
BstSCI	CCNGG	2 cut(s)	224, 269
BstSFI	CTRYAG	1 cut(s)	568
BstUI	CGCG	1 cut(s)	605
BstV1I	GCAGC	2 cut(s)	26, 551
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	99, 179
BstYI	RGATCY	2 cut(s)	99, 179
BsuRI	GGCC	2 cut(s)	224, 675
BtgI	CCRYGG	1 cut(s)	742
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	37, 308
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	260, 370
CfoI	GCGC	2 cut(s)	728, 791
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	2 cut(s)	222, 340
CseI	GACGC	2 cut(s)	594, 611
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	9 cut(s)	167, 224, 258, 294, 333, 352, 534, 564, 675
CviKI_1	RGCY	9 cut(s)	167, 224, 258, 294, 333, 352, 534, 564, 675
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	4 cut(s)	154, 183, 348, 530
DinI	GGCGCC	1 cut(s)	790
DpnI	GATC	6 cut(s)	101, 181, 251, 528, 611, 705
DpnII	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
Eam1104I	CTCTTC	2 cut(s)	137, 465
EarI	CTCTTC	2 cut(s)	137, 465
EciI	GGCGGA	1 cut(s)	728
Eco47I	GGWCC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	224, 269
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	790
EheI	GGCGCC	1 cut(s)	790
FaeI	CATG	1 cut(s)	222
FaiI	YATR	3 cut(s)	202, 220, 356
FaqI	GGGAC	2 cut(s)	534, 760
FatI	CATG	1 cut(s)	218
FauI	CCCGC	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	4 cut(s)	15, 501, 562, 565
FokI	GGATG	2 cut(s)	44, 315
Fsp4HI	GCNGC	4 cut(s)	15, 501, 562, 565
FspBI	CTAG	2 cut(s)	653, 813
GlaI	GCGC	2 cut(s)	727, 790
GluI	GCNGC	4 cut(s)	15, 501, 562, 565
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	792
HaeIII	GGCC	2 cut(s)	224, 675
HapII	CCGG	2 cut(s)	308, 515
HgaI	GACGC	2 cut(s)	594, 611
HhaI	GCGC	2 cut(s)	728, 791
Hin1I	GRCGYC	2 cut(s)	60, 789
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	2 cut(s)	726, 789
HinP1I	GCGC	2 cut(s)	726, 789
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	6 cut(s)	26, 71, 92, 215, 542, 689
HpaII	CCGG	2 cut(s)	308, 515
HphI	GGTGA	5 cut(s)	374, 487, 537, 713, 722
Hpy166II	GTNNAC	2 cut(s)	340, 541
Hpy188I	TCNGA	4 cut(s)	31, 162, 214, 581
Hpy188III	TCNNGA	4 cut(s)	23, 68, 653, 813
Hpy8I	GTNNAC	2 cut(s)	340, 541
Hpy99I	CGWCG	7 cut(s)	62, 65, 437, 605, 610, 647, 760
HpyAV	CCTTC	4 cut(s)	87, 170, 354, 402
HpyCH4III	ACNGT	4 cut(s)	210, 493, 549, 751
HpyCH4IV	ACGT	5 cut(s)	60, 135, 171, 537, 645
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	4 cut(s)	154, 183, 348, 530
HpySE526I	ACGT	5 cut(s)	60, 135, 171, 537, 645
Hsp92I	GRCGYC	2 cut(s)	60, 789
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	2 cut(s)	726, 789
KasI	GGCGCC	1 cut(s)	788
Kzo9I	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
LmnI	GCTCC	2 cut(s)	431, 763
Lsp1109I	GCAGC	2 cut(s)	26, 551
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	2 cut(s)	653, 813
MaeII	ACGT	5 cut(s)	60, 135, 171, 537, 645
MaeIII	GTNAC	2 cut(s)	493, 646
MalI	GATC	6 cut(s)	101, 181, 251, 528, 611, 705
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
MflI	RGATCY	2 cut(s)	99, 179
MluCI	AATT	2 cut(s)	18, 634
MluI	ACGCGT	1 cut(s)	603
Mly113I	GGCGCC	1 cut(s)	789
MlyI	GAGTC	3 cut(s)	86, 536, 698
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	2 cut(s)	308, 515
MspR9I	CCNGG	2 cut(s)	226, 271
MvaI	CCWGG	2 cut(s)	226, 271
MvnI	CGCG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	570
NarI	GGCGCC	1 cut(s)	789
NdeII	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	3 cut(s)	342, 510, 790
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	632
PaqCI	CACCTGC	1 cut(s)	310
PasI	CCCWGGG	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	26, 71, 215
PkrI	GCNGC	4 cut(s)	16, 502, 563, 566
PleI	GAGTC	3 cut(s)	86, 536, 697
PluTI	GGCGCC	1 cut(s)	792
PpsI	GAGTC	3 cut(s)	86, 536, 697
Ppu21I	YACGTR	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	224, 269
PspGI	CCWGG	2 cut(s)	224, 269
PspN4I	GGNNCC	3 cut(s)	342, 510, 790
PspPI	GGNCC	2 cut(s)	222, 340
PsuI	RGATCY	2 cut(s)	99, 179
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	4 cut(s)	15, 501, 562, 565
Sau3AI	GATC	6 cut(s)	99, 179, 249, 526, 609, 703
Sau96I	GGNCC	2 cut(s)	222, 340
SchI	GAGTC	3 cut(s)	86, 536, 698
ScrFI	CCNGG	2 cut(s)	226, 271
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	568
SfoI	GGCGCC	1 cut(s)	790
SfuI	TTCGAA	1 cut(s)	632
SgrAI	CRCCGGYG	1 cut(s)	514
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	2 cut(s)	18, 634
SsiI	CCGC	8 cut(s)	402, 424, 447, 498, 501, 518, 561, 739
SspDI	GGCGCC	1 cut(s)	788
SspMI	CTAG	2 cut(s)	653, 813
StyD4I	CCNGG	2 cut(s)	224, 269
TaaI	ACNGT	4 cut(s)	210, 493, 549, 751
TaiI	ACGT	5 cut(s)	63, 138, 174, 540, 648
TaqI	TCGA	4 cut(s)	608, 632, 642, 772
TasI	AATT	2 cut(s)	18, 634
TauI	GCSGC	2 cut(s)	503, 564
TfiI	GAWTC	3 cut(s)	26, 71, 215
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	14, 564
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	4 cut(s)	252, 421, 721, 773
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	634
XbaI	TCTAGA	2 cut(s)	652, 812
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	2 cut(s)	653, 813
ZraI	GACGTC	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.