AT3G59380

Farnesyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21944170 .. 21946007
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59380.1

Sequence Viewer

Length: 981 bp
ATGAATTTCGACGAGACCGTGCCACTGAGCCAACGATTGGAGTGGTCAGACGTGGTCCCATTGACTCAGGACGATGGTCCGAATCCAGTGGTGCCAATTGCCTACAAGGAAGAGTTCCGCGAGACTATGGATTACTTCCGTGCGATTTACTTTTCCGACGAGCGATCTCCTCGCGCACTACGACTCACGGAAGAAACCCTCCTCTTAAACTCCGGCAACTACACAGTGTGGCATTTCAGGCGCCTAGTACTCGAGGCCCTTAATCACGACTTGTTTGAAGAACTCGAGTTCATCGAACGCATTGCTGAGGATAACTCTAAGAACTACCAACTGTGGCATCATCGGCGATGGGTTGCAGAGAAACTGGGTCCTGATGTTGCAGGGAGAGAACTTGAATTTACCCGTAGAGTACTTTCACTTGATGCCAAACATTATCATGCTTGGTCACATAGGCAGTGGACACTACGGGCATTAGGAGGATGGGAAGATGAGCTCGATTACTGTCACGAGCTCCTTGAAGCTGACGTCTTTAACAATTCCGCCTGGAATCAGAGGTATTATGTCATCACCCAATCTCCTTTGTTGGGAGGCCTAGAAGCCATGAGAGAATCTGAAGTAAGCTACACAATCAAAGCCATTTTAACCAATCCTGCAAACGAGAGCTCATGGCGATACCTAAAAGCTCTTTACAAAGACGACAAAGAATCCTGGATTAGTGATCCAAGTGTTTCCTCAGTCTGTTTGAATGTTCTATCCCGCACAGATTGCTTCCATGGATTCGCTCTGAGCACCCTTTTGGATCTTCTATGTGATGGACTGAGACCAACCAACGAGCATAAAGACTCAGTGAGAGCTCTAGCTAATGAAGAACCAGAGACTAACTTGGCCAATTTGGTGTGTACTATTCTTGGTCGTGTAGATCCTGTAAGAGCTAACTATTGGGCATGGAGGAAGAGCAAGATTACAGTGGCAGCAATTTGA

Protein Analysis

326

Amino Acids

37.98

Weight (kDa)

5.17

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 58 - 86 4.1e-06 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 93 - 121 4.8e-10 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 129 - 157 8.5e-10 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 161 - 191 4.3e-07 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012140)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 91, 240
AccB7I CCANNNNNTGG 1 cut(s) 37
AccII CGCG 2 cut(s) 120, 174
AciI CCGC 3 cut(s) 118, 540, 757
AclWI GGATC 3 cut(s) 713, 807, 914
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 2 cut(s) 4, 395
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 2 cut(s) 241, 525
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 3 cut(s) 249, 411, 901
AfiI CCNNNNNNNGG 2 cut(s) 37, 584
AgsI TTSAA 4 cut(s) 278, 395, 518, 745
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 542, 707
AluBI AGCT 9 cut(s) 493, 511, 521, 621, 663, 683, 854, 860, 932
AluI AGCT 9 cut(s) 493, 511, 521, 621, 663, 683, 854, 860, 932
Alw21I GWGCWC 5 cut(s) 495, 513, 665, 791, 856
Alw26I GTCTC 4 cut(s) 8, 116, 814, 869
AlwI GGATC 3 cut(s) 713, 807, 914
Ama87I CYCGRG 2 cut(s) 251, 284
AoxI GGCC 3 cut(s) 255, 589, 885
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 4, 395
AspLEI GCGC 2 cut(s) 176, 243
AspS9I GGNCC 4 cut(s) 55, 77, 256, 368
AsuHPI GGTGA 1 cut(s) 559
AvaI CYCGRG 2 cut(s) 251, 284
AvaII GGWCC 3 cut(s) 55, 77, 368
BalI TGGCCA 1 cut(s) 887
BanI GGYRCC 2 cut(s) 91, 240
BanII GRGCYC 4 cut(s) 495, 513, 665, 856
BauI CACGAG 1 cut(s) 506
Bbv12I GWGCWC 5 cut(s) 495, 513, 665, 791, 856
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 4 cut(s) 68, 342, 474, 806
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 2 cut(s) 544, 709
BcoDI GTCTC 4 cut(s) 8, 116, 814, 869
BfaI CTAG 3 cut(s) 245, 593, 857
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 1 cut(s) 972
BlsI GCNGC 1 cut(s) 973
BmcAI AGTACT 2 cut(s) 249, 411
Bme1390I CCNGG 2 cut(s) 544, 709
Bme18I GGWCC 3 cut(s) 55, 77, 368
BmeT110I CYCGRG 2 cut(s) 251, 284
BmgBI CACGTC 1 cut(s) 52
BmgT120I GGNCC 4 cut(s) 55, 77, 256, 368
BmiI GGNNCC 4 cut(s) 57, 93, 242, 369
BmrFI CCNGG 2 cut(s) 544, 709
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 2 cut(s) 346, 412
BmuI ACTGGG 1 cut(s) 374
BoxI GACNNNNGTC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bpu10I CCTNAGC 1 cut(s) 306
BsaHI GRCGYC 2 cut(s) 241, 525
BsaI GGTCTC 2 cut(s) 8, 814
BsaJI CCNNGG 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 584
Bse1I ACTGG 2 cut(s) 86, 369
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 2 cut(s) 544, 709
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 2 cut(s) 37, 584
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 7 cut(s) 17, 80, 297, 747, 776, 809, 858
BseNI ACTGG 2 cut(s) 86, 369
BseRI GAGGAG 2 cut(s) 159, 191
Bsh1236I CGCG 2 cut(s) 120, 174
BshFI GGCC 3 cut(s) 257, 591, 887
BshNI GGYRCC 2 cut(s) 91, 240
BsiHKAI GWGCWC 5 cut(s) 495, 513, 665, 791, 856
BsiHKCI CYCGRG 2 cut(s) 251, 284
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 37, 584
BsmAI GTCTC 4 cut(s) 8, 116, 814, 869
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 257, 591, 887
Bso31I GGTCTC 2 cut(s) 8, 814
BsoBI CYCGRG 2 cut(s) 251, 284
Bsp1286I GDGCHC 5 cut(s) 495, 513, 665, 791, 856
Bsp143I GATC 4 cut(s) 164, 718, 799, 919
Bsp19I CCATGG 1 cut(s) 772
BspACI CCGC 3 cut(s) 118, 540, 757
BspANI GGCC 3 cut(s) 257, 591, 887
BspCNI CTCAG 7 cut(s) 18, 79, 298, 746, 777, 810, 857
BspFNI CGCG 2 cut(s) 120, 174
BspLI GGNNCC 4 cut(s) 57, 93, 242, 369
BspPI GGATC 3 cut(s) 713, 807, 914
BspQI GCTCTTC 1 cut(s) 947
BspT107I GGYRCC 2 cut(s) 91, 240
BspTNI GGTCTC 2 cut(s) 8, 814
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 86, 369
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 4 cut(s) 164, 718, 799, 919
BssNI GRCGYC 2 cut(s) 241, 525
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 772
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 544, 709
Bst4CI ACNGT 5 cut(s) 19, 226, 333, 503, 967
Bst6I CTCTTC 2 cut(s) 105, 947
BstACI GRCGYC 2 cut(s) 241, 525
BstAPI GCANNNNNTGC 1 cut(s) 765
BstDEI CTNAG 8 cut(s) 26, 66, 306, 318, 733, 785, 818, 844
BstDSI CCRYGG 1 cut(s) 772
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 2 cut(s) 120, 174
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 176, 243
BstKTI GATC 4 cut(s) 167, 721, 802, 922
BstMAI GTCTC 4 cut(s) 8, 116, 814, 869
BstMBI GATC 4 cut(s) 164, 718, 799, 919
BstMWI GCNNNNNNNGC 3 cut(s) 238, 343, 765
BstNI CCWGG 2 cut(s) 544, 709
BstPAI GACNNNNGTC 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 542, 707
BstUI CGCG 2 cut(s) 120, 174
BstX2I RGATCY 2 cut(s) 799, 919
BstYI RGATCY 2 cut(s) 799, 919
BsuRI GGCC 3 cut(s) 257, 591, 887
BtgI CCRYGG 1 cut(s) 772
BtgZI GCGATG 1 cut(s) 361
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 485
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 6 cut(s) 23, 93, 231, 461, 852, 972
CfoI GCGC 2 cut(s) 176, 243
Cfr13I GGNCC 4 cut(s) 55, 77, 256, 368
Csp6I GTAC 3 cut(s) 248, 410, 900
CviAII CATG 5 cut(s) 437, 601, 666, 773, 945
CviQI GTAC 3 cut(s) 248, 410, 900
DdeI CTNAG 8 cut(s) 26, 66, 306, 318, 733, 785, 818, 844
DinI GGCGCC 1 cut(s) 242
DpnI GATC 4 cut(s) 166, 720, 801, 921
DpnII GATC 4 cut(s) 164, 718, 799, 919
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 2 cut(s) 105, 947
EarI CTCTTC 2 cut(s) 105, 947
EciI GGCGGA 1 cut(s) 529
Ecl136II GAGCTC 4 cut(s) 493, 511, 663, 854
Eco130I CCWWGG 1 cut(s) 772
Eco147I AGGCCT 1 cut(s) 591
Eco24I GRGCYC 4 cut(s) 495, 513, 665, 856
Eco31I GGTCTC 2 cut(s) 8, 814
Eco47I GGWCC 3 cut(s) 55, 77, 368
Eco53kI GAGCTC 4 cut(s) 493, 511, 663, 854
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 2 cut(s) 251, 284
EcoICRI GAGCTC 4 cut(s) 493, 511, 663, 854
EcoO109I RGGNCCY 2 cut(s) 256, 368
EcoRII CCWGG 2 cut(s) 542, 707
EcoT14I CCWWGG 1 cut(s) 772
EcoT38I GRGCYC 4 cut(s) 495, 513, 665, 856
EgeI GGCGCC 1 cut(s) 242
EheI GGCGCC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 5 cut(s) 440, 604, 669, 776, 948
FaqI GGGAC 1 cut(s) 41
FatI CATG 5 cut(s) 436, 600, 665, 772, 944
FauI CCCGC 1 cut(s) 764
Fnu4HI GCNGC 1 cut(s) 972
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 4 cut(s) 495, 513, 665, 856
Fsp4HI GCNGC 1 cut(s) 972
FspBI CTAG 3 cut(s) 245, 593, 857
GlaI GCGC 2 cut(s) 175, 242
GluI GCNGC 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 3 cut(s) 257, 591, 887
HapII CCGG 1 cut(s) 213
HhaI GCGC 2 cut(s) 176, 243
Hin1I GRCGYC 2 cut(s) 241, 525
Hin1II CATG 5 cut(s) 440, 604, 669, 776, 948
Hin6I GCGC 2 cut(s) 174, 241
HinP1I GCGC 2 cut(s) 174, 241
HinfI GANTC 8 cut(s) 64, 82, 183, 547, 608, 704, 777, 842
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 559
Hpy166II GTNNAC 2 cut(s) 459, 900
Hpy188I TCNGA 6 cut(s) 49, 81, 157, 552, 613, 786
Hpy188III TCNNGA 4 cut(s) 68, 266, 371, 506
Hpy8I GTNNAC 2 cut(s) 459, 900
Hpy99I CGWCG 2 cut(s) 14, 161
HpyCH4III ACNGT 5 cut(s) 19, 226, 333, 503, 967
HpyCH4IV ACGT 2 cut(s) 51, 525
HpyCH4V TGCA 3 cut(s) 356, 380, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 343, 765
HpyF3I CTNAG 8 cut(s) 26, 66, 306, 318, 733, 785, 818, 844
HpySE526I ACGT 2 cut(s) 51, 525
Hsp92I GRCGYC 2 cut(s) 241, 525
Hsp92II CATG 5 cut(s) 440, 604, 669, 776, 948
HspAI GCGC 2 cut(s) 174, 241
KasI GGCGCC 1 cut(s) 240
Kzo9I GATC 4 cut(s) 164, 718, 799, 919
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 1 cut(s) 516
LweI GCATC 2 cut(s) 346, 412
MaeI CTAG 3 cut(s) 245, 593, 857
MaeII ACGT 2 cut(s) 51, 525
MaeIII GTNAC 2 cut(s) 444, 503
MalI GATC 4 cut(s) 166, 720, 801, 921
MboI GATC 4 cut(s) 164, 718, 799, 919
MboII GAAGA 7 cut(s) 122, 203, 290, 497, 794, 878, 964
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 2 cut(s) 799, 919
MhlI GDGCHC 5 cut(s) 495, 513, 665, 791, 856
MlsI TGGCCA 1 cut(s) 887
MluCI AATT 6 cut(s) 4, 96, 395, 535, 889, 975
MluNI TGGCCA 1 cut(s) 887
Mly113I GGCGCC 1 cut(s) 241
MlyI GAGTC 3 cut(s) 58, 177, 836
MmeI TCCRAC 1 cut(s) 180
Mox20I TGGCCA 1 cut(s) 887
MscI TGGCCA 1 cut(s) 887
MseI TTAA 4 cut(s) 206, 261, 531, 641
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 887
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 544, 709
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 2 cut(s) 544, 709
MvnI CGCG 2 cut(s) 120, 174
MwoI GCNNNNNNNGC 3 cut(s) 238, 343, 765
NarI GGCGCC 1 cut(s) 241
NcoI CCATGG 1 cut(s) 772
NdeII GATC 4 cut(s) 164, 718, 799, 919
NlaIII CATG 5 cut(s) 440, 604, 669, 776, 948
NlaIV GGNNCC 4 cut(s) 57, 93, 242, 369
NmuCI GTSAC 2 cut(s) 444, 503
PaeR7I CTCGAG 2 cut(s) 251, 284
PceI AGGCCT 1 cut(s) 591
PciSI GCTCTTC 1 cut(s) 947
PcsI WCGNNNNNNNCGW 3 cut(s) 15, 178, 291
PfeI GAWTC 5 cut(s) 82, 547, 608, 704, 777
PflFI GACNNNGTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 1 cut(s) 973
PleI GAGTC 3 cut(s) 58, 177, 836
PluTI GGCGCC 1 cut(s) 244
PpsI GAGTC 3 cut(s) 58, 177, 836
PpuMI RGGWCCY 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 75
Psp124BI GAGCTC 4 cut(s) 495, 513, 665, 856
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 542, 707
PspGI CCWGG 2 cut(s) 542, 707
PspN4I GGNNCC 4 cut(s) 57, 93, 242, 369
PspPI GGNCC 4 cut(s) 55, 77, 256, 368
PspPPI RGGWCCY 1 cut(s) 368
PspXI VCTCGAGB 2 cut(s) 251, 284
PsuI RGATCY 2 cut(s) 799, 919
PsyI GACNNNGTC 1 cut(s) 53
RsaI GTAC 3 cut(s) 249, 411, 901
RsaNI GTAC 3 cut(s) 248, 410, 900
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 4 cut(s) 495, 513, 665, 856
SapI GCTCTTC 1 cut(s) 947
SaqAI TTAA 4 cut(s) 206, 261, 531, 641
SatI GCNGC 1 cut(s) 972
Sau3AI GATC 4 cut(s) 164, 718, 799, 919
Sau96I GGNCC 4 cut(s) 55, 77, 256, 368
ScaI AGTACT 2 cut(s) 249, 411
SchI GAGTC 3 cut(s) 58, 177, 836
ScrFI CCNGG 2 cut(s) 544, 709
SduI GDGCHC 5 cut(s) 495, 513, 665, 791, 856
SfaNI GCATC 2 cut(s) 346, 412
SfoI GGCGCC 1 cut(s) 242
Sfr274I CTCGAG 2 cut(s) 251, 284
SinI GGWCC 3 cut(s) 55, 77, 368
SlaI CTCGAG 2 cut(s) 251, 284
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 251, 284
SmoI CTYRAG 2 cut(s) 251, 284
Sse9I AATT 6 cut(s) 4, 96, 395, 535, 889, 975
SseBI AGGCCT 1 cut(s) 591
SsiI CCGC 3 cut(s) 118, 540, 757
SspDI GGCGCC 1 cut(s) 240
SspMI CTAG 3 cut(s) 245, 593, 857
SstI GAGCTC 4 cut(s) 495, 513, 665, 856
StuI AGGCCT 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 542, 707
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 5 cut(s) 19, 226, 333, 503, 967
TaiI ACGT 2 cut(s) 54, 528
TaqI TCGA 5 cut(s) 9, 252, 285, 294, 495
TasI AATT 6 cut(s) 4, 96, 395, 535, 889, 975
TatI WGTACW 3 cut(s) 247, 409, 899
TfiI GAWTC 5 cut(s) 82, 547, 608, 704, 777
Tru1I TTAA 4 cut(s) 206, 261, 531, 641
Tru9I TTAA 4 cut(s) 206, 261, 531, 641
TscAI CASTG 6 cut(s) 30, 93, 231, 461, 852, 972
TseFI GTSAC 2 cut(s) 444, 503
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 2 cut(s) 444, 503
TspDTI ATGAA 3 cut(s) 17, 280, 879
TspGWI ACGGA 2 cut(s) 128, 203
TspRI CASTG 6 cut(s) 30, 93, 231, 461, 852, 972
Tth111I GACNNNGTC 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 3 cut(s) 55, 77, 368
XapI RAATTY 2 cut(s) 4, 395
XhoI CTCGAG 2 cut(s) 251, 284
XspI CTAG 3 cut(s) 245, 593, 857
ZraI GACGTC 1 cut(s) 526
ZrmI AGTACT 2 cut(s) 249, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.