Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Forward (+)

17695390 .. 17699430

Gene Structure 4041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G191500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGACTCGGACGAAGAACAAGAGTGGGTCCCGTTGAAGAATAGACCGGAGTGGTCGGACGTCGTTCCGGTTGAGCAAGACGACGGCCCGAACCCGGTTGTCCCCATAGCCTACAAGGAAGAGTTCACAGAGACCATGAACTACTTCCGAGCCCTCTACAGAGCCGATGAGCGATCCCCTCGTGCCCTTCAGCTCACCACGGAAGCCATCAAATTGAACTCAGGAAACTACACTGTTTGGCATTTCAGGCGTTTAATACTGAAGGCGCTTAGTGCTGATTTACAGAATGAACTTGATTTCACTGAAGATATTGCAAGGGCTAACTCAAAAAATTATCAGTTATGGCATCATAGACGGTGGGTTGCTGAGATATTGGGAACTAATGCTACAACCCAGGAACTTGAGTTCACCAAGAAGATACTTTCCCATGATGCTAAACATTATCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGAGCTTGGAGGGTGGGAGGATGAACTTGACTATTGTCATGAGCTCCTTGAAGAAGACGTCTTTAACAATTCTGCTTGGAATCAGAGAAATTTTGTCATTACAAGATCTCCATTCCTGGGAGGCCTAAAAGCTATGAGAGAATCTGAAGTGTCTTATACTCTGAAGGCCATTGTAGCCCACCCTGAGAATGAAAGTTCATGGAGATACCTTCGGGGGCTTTACAAAAATGACAATCAGTCTTGGATGAAGAATACTCAAATATCTTCAGTATGCTTGAAGATTTTAATTGCCAAAACCGACTGTATCTTTGCTTTAAGCACACTTTTGGATCTCATATGCCATGGTTTCCAAGCAAGCCAAGAGTTCAGAGATGCCGTGGATGCCCTAAGAAATTCAGACTTGGAACAAGCAGAATCTGACTTGGCCAAAACTATTTGCTCTCTCTTGGAAACGGTCGATCCAATAAGAGTCAACTATTGGAAGTGGCGTAAGAGCATGCTTTGCCAAGATGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

332

Amino Acids

38.72

Weight (kDa)

5.23

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	63, 537
AclWI	GGATC	3 cut(s)	168, 813, 929
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	2 cut(s)	565, 868
AcuI	CTGAAG	7 cut(s)	173, 281, 324, 458, 642, 659, 726
AcyI	GRCGYC	2 cut(s)	60, 534
AfiI	CCNNNNNNNGG	2 cut(s)	94, 593
AgsI	TTSAA	4 cut(s)	37, 217, 527, 754
AhdI	GACNNNNNGTC	1 cut(s)	712
AjnI	CCWGG	2 cut(s)	393, 591
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	193, 481, 520, 608
AluI	AGCT	4 cut(s)	193, 481, 520, 608
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	125, 459
AlwI	GGATC	3 cut(s)	168, 813, 929
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	4 cut(s)	85, 598, 642, 900
ApoI	RAATTY	2 cut(s)	565, 868
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	28, 86
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	187, 400
AvaII	GGWCC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	902
BanII	GRGCYC	2 cut(s)	154, 522
BauI	CACGAG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	100, 836
BciT130I	CCWGG	2 cut(s)	395, 593
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	125, 459
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	269
BglII	AGATCT	1 cut(s)	581
Bme1390I	CCNGG	3 cut(s)	95, 395, 593
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	712
BmgT120I	GGNCC	2 cut(s)	28, 86
BmiI	GGNNCC	2 cut(s)	29, 30
BmrFI	CCNGG	3 cut(s)	95, 395, 593
BmsI	GCATC	5 cut(s)	355, 421, 838, 847, 976
BoxI	GACNNNNGTC	1 cut(s)	510
BpiI	GAAGAC	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	95
BsaHI	GRCGYC	2 cut(s)	60, 534
BsaI	GGTCTC	2 cut(s)	125, 459
BsaJI	CCNNGG	5 cut(s)	198, 393, 592, 817, 852
BsaWI	WCCGGW	2 cut(s)	46, 67
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 593
BseBI	CCWGG	2 cut(s)	395, 593
BseDI	CCNNGG	5 cut(s)	198, 393, 592, 817, 852
BseGI	GGATG	3 cut(s)	502, 726, 862
BseLI	CCNNNNNNNGG	2 cut(s)	94, 593
BseMII	CTCAG	3 cut(s)	234, 357, 651
BseSI	GKGCMC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	933
BshFI	GGCC	4 cut(s)	87, 600, 644, 902
BsiEI	CGRYCG	1 cut(s)	933
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	3 cut(s)	47, 68, 95
BslFI	GGGAC	2 cut(s)	14, 86
BslI	CCNNNNNNNGG	2 cut(s)	94, 593
BsmAI	GTCTC	2 cut(s)	125, 459
BsmFI	GGGAC	2 cut(s)	14, 86
BsnI	GGCC	4 cut(s)	87, 600, 644, 902
Bso31I	GGTCTC	2 cut(s)	125, 459
Bsp1286I	GDGCHC	3 cut(s)	154, 187, 522
Bsp143I	GATC	4 cut(s)	173, 581, 805, 934
Bsp19I	CCATGG	1 cut(s)	817
BspANI	GGCC	4 cut(s)	87, 600, 644, 902
BspCNI	CTCAG	3 cut(s)	233, 358, 652
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	29, 30
BspPI	GGATC	3 cut(s)	168, 813, 929
BspTNI	GGTCTC	2 cut(s)	125, 459
BssECI	CCNNGG	5 cut(s)	198, 393, 592, 817, 852
BssMI	GATC	4 cut(s)	173, 581, 805, 934
BssNI	GRCGYC	2 cut(s)	60, 534
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	817
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	395, 593
Bst4CI	ACNGT	4 cut(s)	235, 357, 779, 931
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	2 cut(s)	60, 534
BstAPI	GCANNNNNTGC	1 cut(s)	978
BstC8I	GCNNGC	2 cut(s)	832, 974
BstDEI	CTNAG	5 cut(s)	220, 269, 366, 660, 863
BstDSI	CCRYGG	3 cut(s)	198, 817, 852
BstF5I	GGATG	3 cut(s)	502, 726, 862
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	4 cut(s)	176, 584, 808, 937
BstMAI	GTCTC	2 cut(s)	125, 459
BstMBI	GATC	4 cut(s)	173, 581, 805, 934
BstMCI	CGRYCG	1 cut(s)	933
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 272, 650, 857, 978
BstNI	CCWGG	2 cut(s)	395, 593
BstNSI	RCATGY	1 cut(s)	976
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	93, 393, 591
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	2 cut(s)	581, 805
BstYI	RGATCY	2 cut(s)	581, 805
BsuRI	GGCC	4 cut(s)	87, 600, 644, 902
BtgI	CCRYGG	3 cut(s)	198, 817, 852
BtsCI	GGATG	3 cut(s)	502, 726, 862
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	3 cut(s)	231, 300, 470
Cac8I	GCNNGC	2 cut(s)	832, 974
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	28, 86
CviAII	CATG	7 cut(s)	136, 428, 446, 515, 675, 818, 973
DdeI	CTNAG	5 cut(s)	220, 269, 366, 660, 863
DpnI	GATC	4 cut(s)	175, 583, 807, 936
DpnII	GATC	4 cut(s)	173, 581, 805, 934
DriI	GACNNNNNGTC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	712
EarI	CTCTTC	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	817
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	154, 522
Eco31I	GGTCTC	2 cut(s)	125, 459
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	520
Eco57I	CTGAAG	7 cut(s)	173, 281, 324, 458, 642, 659, 726
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	393, 591
EcoT14I	CCWWGG	1 cut(s)	817
EcoT38I	GRGCYC	2 cut(s)	154, 522
ErhI	CCWWGG	1 cut(s)	817
FaeI	CATG	7 cut(s)	139, 431, 449, 518, 678, 821, 976
FaqI	GGGAC	2 cut(s)	14, 86
FatI	CATG	7 cut(s)	135, 427, 445, 514, 674, 817, 972
FauNDI	CATATG	1 cut(s)	812
FokI	GGATG	3 cut(s)	509, 733, 869
FriOI	GRGCYC	2 cut(s)	154, 522
GlaI	GCGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	4 cut(s)	87, 600, 644, 902
HapII	CCGG	3 cut(s)	47, 68, 95
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	2 cut(s)	60, 534
Hin1II	CATG	7 cut(s)	139, 431, 449, 518, 678, 821, 976
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HinfI	GANTC	5 cut(s)	5, 556, 617, 890, 945
HpaII	CCGG	3 cut(s)	47, 68, 95
HphI	GGTGA	2 cut(s)	187, 400
Hpy166II	GTNNAC	3 cut(s)	126, 408, 949
Hpy188I	TCNGA	9 cut(s)	10, 58, 149, 561, 622, 639, 845, 874, 895
Hpy188III	TCNNGA	3 cut(s)	222, 476, 515
Hpy8I	GTNNAC	3 cut(s)	126, 408, 949
Hpy99I	CGWCG	2 cut(s)	65, 86
HpyAV	CCTTC	4 cut(s)	197, 256, 634, 695
HpyCH4III	ACNGT	4 cut(s)	235, 357, 779, 931
HpyCH4IV	ACGT	2 cut(s)	60, 534
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 272, 650, 857, 978
HpyF3I	CTNAG	5 cut(s)	220, 269, 366, 660, 863
HpySE526I	ACGT	2 cut(s)	60, 534
Hsp92I	GRCGYC	2 cut(s)	60, 534
Hsp92II	CATG	7 cut(s)	139, 431, 449, 518, 678, 821, 976
HspAI	GCGC	1 cut(s)	266
KflI	GGGWCCC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	173, 581, 805, 934
LmnI	GCTCC	2 cut(s)	478, 525
LweI	GCATC	5 cut(s)	355, 421, 838, 847, 976
MaeII	ACGT	2 cut(s)	60, 534
MalI	GATC	4 cut(s)	175, 583, 807, 936
MboI	GATC	4 cut(s)	173, 581, 805, 934
MflI	RGATCY	2 cut(s)	581, 805
MhlI	GDGCHC	3 cut(s)	154, 187, 522
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	7 cut(s)	212, 331, 544, 565, 762, 868, 991
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	1 cut(s)	954
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	164, 189, 479, 487, 590
Mox20I	TGGCCA	1 cut(s)	902
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	5 cut(s)	254, 540, 761, 791, 994
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	902
MspI	CCGG	3 cut(s)	47, 68, 95
MspR9I	CCNGG	3 cut(s)	95, 395, 593
MvaI	CCWGG	2 cut(s)	395, 593
MwoI	GCNNNNNNNGC	5 cut(s)	247, 272, 650, 857, 978
NciI	CCSGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	817
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	4 cut(s)	173, 581, 805, 934
NlaIII	CATG	7 cut(s)	139, 431, 449, 518, 678, 821, 976
NlaIV	GGNNCC	2 cut(s)	29, 30
NspI	RCATGY	1 cut(s)	976
PaeI	GCATGC	1 cut(s)	976
PagI	TCATGA	1 cut(s)	514
PceI	AGGCCT	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	556, 617, 890
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PpuMI	RGGWCCY	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	510
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	393, 591
PspGI	CCWGG	2 cut(s)	393, 591
PspN4I	GGNNCC	2 cut(s)	29, 30
PspPI	GGNCC	2 cut(s)	28, 86
PspPPI	RGGWCCY	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	370, 402
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	581, 805
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	5 cut(s)	254, 540, 761, 791, 994
Sau3AI	GATC	4 cut(s)	173, 581, 805, 934
Sau96I	GGNCC	2 cut(s)	28, 86
SchI	GAGTC	1 cut(s)	954
ScrFI	CCNGG	3 cut(s)	95, 395, 593
SduI	GDGCHC	3 cut(s)	154, 187, 522
SetI	ASST	7 cut(s)	63, 195, 483, 522, 537, 610, 687
SfaNI	GCATC	5 cut(s)	355, 421, 838, 847, 976
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	976
Sse9I	AATT	7 cut(s)	212, 331, 544, 565, 762, 868, 991
SseBI	AGGCCT	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	522
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	3 cut(s)	93, 393, 591
StyI	CCWWGG	1 cut(s)	817
TaaI	ACNGT	4 cut(s)	235, 357, 779, 931
TaiI	ACGT	2 cut(s)	63, 537
TaqI	TCGA	1 cut(s)	933
TasI	AATT	7 cut(s)	212, 331, 544, 565, 762, 868, 991
TfiI	GAWTC	3 cut(s)	556, 617, 890
Tru1I	TTAA	5 cut(s)	254, 540, 761, 791, 994
Tru9I	TTAA	5 cut(s)	254, 540, 761, 791, 994
TscAI	CASTG	3 cut(s)	238, 307, 470
TspDTI	ATGAA	6 cut(s)	152, 303, 513, 663, 681, 737
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	3 cut(s)	238, 307, 470
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	565, 868
XceI	RCATGY	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	143
ZraI	GACGTC	2 cut(s)	61, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.