Rroxscaffold_5G00351730

Protein farnesyltransferase geranylgeranyltransferase type-1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012140
Physical Location & Seq
Reverse (-)
28260667 .. 28266042
5376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351730.1

Sequence Viewer

Length: 996 bp
ATGTCGTCGTCAGACGAAGAGGGGAAGTGGGTCCCACTAAGGAGGAGACCGGAGTTTTCGGACGTGATCCCGGTGGAGCAAGACGACGGGCCGAACCCGGTGGTTCCGATAACCTACAAGGAAGAGTTCCGAGAGACCATGGACTATTTCCGAGCCCTGTACAAAGCCGATGAGCGATCCCTTCGCGCCCTCCACCTCACTTCCGAAGCCATCCAATTCAACCCTGGAAACTACACTGTATGGCACTTTAGGCGCTTAGTACTTGAGGCACTCAATCATGATTTGCACGATGAACTTGCTCTGACTGAACACATTGCTCAAGGAAACTCCAAAAACTATCAGTTGTGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAGCTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGGAGACGAACTCGACTATTGTCACCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATCTCGTCATTACAAGATCTCCGTTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGCCATTGTTGCCCGCCCTGAGAAACGAAAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTTGTCTTGGGTCAACAATCCTCAAATTTCTTCAGTATGCTTGGAGATTTTAAATGTCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTCCAACCAAGCCAAGAGTTCACAGATGCTGTGGATGCTCTAGGAATTTCAGACTCTGAACAAAGAGATTCTGATGTGGCAAAAGGCAAAAGCTGCTTGGTTGAAAAGGCGTGCTATTTAAACTCCAACAGCGTCAAAATAAGAAAGTGCAAAACACCATTTTATTAG

Protein Analysis

331

Amino Acids

38.36

Weight (kDa)

6.19

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 62 - 90 3.2e-07 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 95 - 125 1e-08 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 133 - 162 2.2e-10 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 165 - 195 6.6e-06 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59380
fragaria_vesca FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica MD04G1007300.v1.1
prunus_persica Prupe.1G191500_v2.0.a1
pyrus_communis pycom04g03430
rosa_chinensis RchiOBHm_Chr4g0407031
rosa_laevigata RLG00000008742
rosa_multiflora Rmu_sc0000600.1_g000009
rosa_roxburghii Rroxscaffold_5G00351730
rosa_rugosa Rorug04G0077000
rosa_samantha Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana Rw4G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 687
AccB1I GGYRCC 1 cut(s) 687
AccII CGCG 1 cut(s) 186
AciI CCGC 2 cut(s) 358, 658
AclWI GGATC 3 cut(s) 61, 171, 819
AcsI RAATTY 2 cut(s) 741, 873
AcuI CTGAAG 3 cut(s) 461, 645, 732
AfaI GTAC 3 cut(s) 161, 261, 689
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 3 cut(s) 220, 530, 932
AhdI GACNNNNNGTC 1 cut(s) 718
AhlI ACTAGT 1 cut(s) 383
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 2 cut(s) 223, 594
AloI GAACNNNNNNTCC 4 cut(s) 392, 410, 424, 442
AluBI AGCT 6 cut(s) 368, 403, 523, 611, 678, 921
AluI AGCT 6 cut(s) 368, 403, 523, 611, 678, 921
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 4 cut(s) 40, 128, 462, 492
AlwI GGATC 3 cut(s) 61, 171, 819
AlwNI CAGNNNCTG 2 cut(s) 857, 884
AoxI GGCC 2 cut(s) 89, 601
ApeKI GCWGC 1 cut(s) 921
ApoI RAATTY 2 cut(s) 741, 873
Asp718I GGTACC 1 cut(s) 687
AspLEI GCGC 2 cut(s) 188, 255
AspS9I GGNCC 2 cut(s) 31, 89
AsuC2I CCSGG 2 cut(s) 71, 98
AsuHPI GGTGA 2 cut(s) 403, 509
AvaII GGWCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 908
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 225, 596
BcnI CCSGG 2 cut(s) 71, 98
BcoDI GTCTC 4 cut(s) 40, 128, 462, 492
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 2 cut(s) 384, 869
BfoI RGCGCY 1 cut(s) 256
BglII AGATCT 1 cut(s) 584
BisI GCNGC 1 cut(s) 922
BlsI GCNGC 1 cut(s) 923
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 4 cut(s) 71, 98, 225, 596
Bme18I GGWCC 1 cut(s) 31
BmeRI GACNNNNNGTC 1 cut(s) 718
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 31, 89
BmiI GGNNCC 4 cut(s) 32, 33, 105, 689
BmrFI CCNGG 4 cut(s) 71, 98, 225, 596
BmsI GCATC 4 cut(s) 358, 424, 844, 853
BoxI GACNNNNGTC 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 540
BplI GAGNNNNNCTC 2 cut(s) 489, 521
Bpu10I CCTNAGC 1 cut(s) 404
BpuEI CTTGAG 2 cut(s) 284, 303
BpuMI CCSGG 2 cut(s) 71, 98
BsaI GGTCTC 3 cut(s) 40, 128, 462
BsaJI CCNNGG 5 cut(s) 138, 223, 396, 595, 823
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 6 cut(s) 392, 410, 422, 440, 571, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 225, 596
BseDI CCNNGG 5 cut(s) 138, 223, 396, 595, 823
BseGI GGATG 2 cut(s) 210, 868
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 360, 654
BseRI GAGGAG 2 cut(s) 58, 413
BseXI GCAGC 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 2 cut(s) 91, 603
BshNI GGYRCC 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 3 cut(s) 50, 71, 98
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 4 cut(s) 40, 128, 462, 492
BsmBI CGTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 17
BsnI GGCC 2 cut(s) 91, 603
Bso31I GGTCTC 3 cut(s) 40, 128, 462
Bsp1286I GDGCHC 2 cut(s) 157, 803
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 66, 176, 584, 811
Bsp19I CCATGG 2 cut(s) 138, 823
BspACI CCGC 2 cut(s) 358, 658
BspANI GGCC 2 cut(s) 91, 603
BspCNI CTCAG 2 cut(s) 361, 655
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 32, 33, 105, 689
BspPI GGATC 3 cut(s) 61, 171, 819
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 3 cut(s) 40, 128, 462
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 159
BssECI CCNNGG 5 cut(s) 138, 223, 396, 595, 823
BssMI GATC 4 cut(s) 66, 176, 584, 811
BssT1I CCWWGG 2 cut(s) 138, 823
Bst2UI CCWGG 2 cut(s) 225, 596
Bst4CI ACNGT 2 cut(s) 238, 785
Bst6I CTCTTC 2 cut(s) 12, 117
BstAPI GCANNNNNTGC 1 cut(s) 921
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 658, 940
BstDEI CTNAG 5 cut(s) 38, 256, 369, 404, 663
BstDSI CCRYGG 2 cut(s) 138, 823
BstF5I GGATG 2 cut(s) 210, 868
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 2 cut(s) 188, 255
BstKTI GATC 4 cut(s) 69, 179, 587, 814
BstMAI GTCTC 4 cut(s) 40, 128, 462, 492
BstMBI GATC 4 cut(s) 66, 176, 584, 811
BstMWI GCNNNNNNNGC 5 cut(s) 250, 355, 653, 863, 921
BstNI CCWGG 2 cut(s) 225, 596
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 4 cut(s) 69, 96, 223, 594
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 908
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 2 cut(s) 584, 811
BstYI RGATCY 2 cut(s) 584, 811
BsuRI GGCC 2 cut(s) 91, 603
BtgI CCRYGG 2 cut(s) 138, 823
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 210, 868
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 2 cut(s) 234, 473
Cac8I GCNNGC 2 cut(s) 658, 940
CaiI CAGNNNCTG 2 cut(s) 857, 884
CciI TCATGA 1 cut(s) 277
CfoI GCGC 2 cut(s) 188, 255
Cfr13I GGNCC 2 cut(s) 31, 89
CseI GACGC 1 cut(s) 949
Csp6I GTAC 3 cut(s) 160, 260, 688
CviAII CATG 5 cut(s) 139, 278, 449, 681, 824
CviQI GTAC 3 cut(s) 160, 260, 688
DdeI CTNAG 5 cut(s) 38, 256, 369, 404, 663
DpnI GATC 4 cut(s) 68, 178, 586, 813
DpnII GATC 4 cut(s) 66, 176, 584, 811
DraI TTTAAA 2 cut(s) 768, 948
DriI GACNNNNNGTC 1 cut(s) 718
Eam1104I CTCTTC 2 cut(s) 12, 117
Eam1105I GACNNNNNGTC 1 cut(s) 718
EarI CTCTTC 2 cut(s) 12, 117
Eco130I CCWWGG 2 cut(s) 138, 823
Eco147I AGGCCT 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 3 cut(s) 40, 128, 462
Eco32I GATATC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 3 cut(s) 461, 645, 732
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 223, 594
EcoRV GATATC 1 cut(s) 569
EcoT14I CCWWGG 2 cut(s) 138, 823
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 138, 823
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 5 cut(s) 142, 281, 452, 684, 827
FaqI GGGAC 1 cut(s) 17
FatI CATG 5 cut(s) 138, 277, 448, 680, 823
FauI CCCGC 1 cut(s) 665
Fnu4HI GCNGC 1 cut(s) 922
FokI GGATG 2 cut(s) 197, 875
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 922
FspBI CTAG 2 cut(s) 384, 869
GlaI GCGC 2 cut(s) 187, 254
GluI GCNGC 1 cut(s) 922
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 2 cut(s) 91, 603
HapII CCGG 3 cut(s) 50, 71, 98
HgaI GACGC 1 cut(s) 949
HhaI GCGC 2 cut(s) 188, 255
Hin1II CATG 5 cut(s) 142, 281, 452, 684, 827
Hin6I GCGC 2 cut(s) 186, 253
HinP1I GCGC 2 cut(s) 186, 253
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 4 cut(s) 559, 620, 881, 896
HpaII CCGG 3 cut(s) 50, 71, 98
HphI GGTGA 2 cut(s) 403, 509
Hpy166II GTNNAC 3 cut(s) 411, 730, 849
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 3 cut(s) 411, 730, 849
Hpy99I CGWCG 2 cut(s) 10, 89
HpyAV CCTTC 2 cut(s) 191, 701
HpyCH4III ACNGT 2 cut(s) 238, 785
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 286, 978
HpyF10VI GCNNNNNNNGC 5 cut(s) 250, 355, 653, 863, 921
HpyF3I CTNAG 5 cut(s) 38, 256, 369, 404, 663
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 5 cut(s) 142, 281, 452, 684, 827
HspAI GCGC 2 cut(s) 186, 253
KflI GGGWCCC 1 cut(s) 31
KpnI GGTACC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 66, 176, 584, 811
LmnI GCTCC 3 cut(s) 76, 400, 528
Lsp1109I GCAGC 1 cut(s) 908
LweI GCATC 4 cut(s) 358, 424, 844, 853
MaeI CTAG 2 cut(s) 384, 869
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 515
MalI GATC 4 cut(s) 68, 178, 586, 813
MboI GATC 4 cut(s) 66, 176, 584, 811
MboII GAAGA 6 cut(s) 29, 134, 467, 542, 545, 738
MflI RGATCY 2 cut(s) 584, 811
MhlI GDGCHC 2 cut(s) 157, 803
MluCI AATT 6 cut(s) 215, 374, 547, 715, 741, 873
MlyI GAGTC 2 cut(s) 629, 875
MmeI TCCRAC 2 cut(s) 856, 978
MseI TTAA 4 cut(s) 543, 642, 767, 947
MslI CAYNNNNRTG 1 cut(s) 447
MspI CCGG 3 cut(s) 50, 71, 98
MspR9I CCNGG 4 cut(s) 71, 98, 225, 596
MvaI CCWGG 2 cut(s) 225, 596
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 5 cut(s) 250, 355, 653, 863, 921
NciI CCSGG 2 cut(s) 71, 98
NcoI CCATGG 2 cut(s) 138, 823
NdeII GATC 4 cut(s) 66, 176, 584, 811
NlaIII CATG 5 cut(s) 142, 281, 452, 684, 827
NlaIV GGNNCC 4 cut(s) 32, 33, 105, 689
NmuCI GTSAC 1 cut(s) 515
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 603
PfeI GAWTC 2 cut(s) 559, 896
PkrI GCNGC 1 cut(s) 923
PleI GAGTC 2 cut(s) 628, 875
PpsI GAGTC 2 cut(s) 628, 875
PpuMI RGGWCCY 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 223, 594
PspGI CCWGG 2 cut(s) 223, 594
PspN4I GGNNCC 4 cut(s) 32, 33, 105, 689
PspPI GGNCC 2 cut(s) 31, 89
PspPPI RGGWCCY 1 cut(s) 31
PsrI GAACNNNNNNTAC 2 cut(s) 373, 405
PstNI CAGNNNCTG 2 cut(s) 857, 884
PsuI RGATCY 2 cut(s) 584, 811
RsaI GTAC 3 cut(s) 161, 261, 689
RsaNI GTAC 3 cut(s) 160, 260, 688
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 4 cut(s) 543, 642, 767, 947
SatI GCNGC 1 cut(s) 922
Sau3AI GATC 4 cut(s) 66, 176, 584, 811
Sau96I GGNCC 2 cut(s) 31, 89
ScaI AGTACT 1 cut(s) 261
SchI GAGTC 2 cut(s) 629, 875
ScrFI CCNGG 4 cut(s) 71, 98, 225, 596
SduI GDGCHC 2 cut(s) 157, 803
SfaNI GCATC 4 cut(s) 358, 424, 844, 853
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 263, 318
SmoI CTYRAG 2 cut(s) 263, 318
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 6 cut(s) 215, 374, 547, 715, 741, 873
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 2 cut(s) 358, 658
SspMI CTAG 2 cut(s) 384, 869
StuI AGGCCT 1 cut(s) 603
StyD4I CCNGG 4 cut(s) 69, 96, 223, 594
StyI CCWWGG 2 cut(s) 138, 823
TaaI ACNGT 2 cut(s) 238, 785
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 507, 694
TasI AATT 6 cut(s) 215, 374, 547, 715, 741, 873
TatI WGTACW 2 cut(s) 159, 259
TfiI GAWTC 2 cut(s) 559, 896
Tru1I TTAA 4 cut(s) 543, 642, 767, 947
Tru9I TTAA 4 cut(s) 543, 642, 767, 947
TscAI CASTG 2 cut(s) 241, 473
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 1 cut(s) 921
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 2 cut(s) 241, 473
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 741, 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XspI CTAG 2 cut(s) 384, 869
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.