Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Forward (+)

14402899 .. 14405168

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10680.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGTCGGACGAAGAGGAGCAGAGGGTCCCACTAAGAAACCGAGCGGAGCTCTCGGACGTGATCCCGGTGGAACAAGACGACGGGCCGAACCCGGTGGTGGCCATATGGTACAAGGAAGAATTCCGAGAGACGATGGACTACTTCCGAGCCCTTTACAAAGCCGATGAGCGATCCCCACGCGCTCTTGAGCTGACCTCCATGGCCATCGAGTTCAACCCCGGCAACTATACTGTATGGCACTTCCGGCGCTCGGTGCTTGAAGCCCTCCGTCATGATCTGCACGCTGAACTTGCTCTTACCGAACGTATCGCTCAAACCAACTCCAAAAATTATCAGTTATGGCACCATAGGCGGTGGGTAGCCGAAAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCCAGAGGATACTCTCCATGGATTCTAAGCATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAAGCACTTGGTGGCTGGGAACAGGAACTTGACTATTGTCACCACCTCCTTCAAGAGGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATCTCCATTCCTGGGGGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGCCATCGTTACCTGCCCCGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCCTCTTGGGTAAACAATCCTCAAATTTCTTCTGTATGCCTTGAGATTATAAATGCCAAAGCCAACTTTGTCTTTGCTTTGAGCACACTTTTGGATCTCATCTCTCATGGTTTCCAACCAAGCCAAGAGTTCAAAGATGCTGTGGATGCTTTACGAATTTCAGACTCCCAACCAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTCTGTCTTGGAATCTGTTGATTCATTACGAGCTAACTATTGGAAGTGGTATAACAGCAAGCATTTCCAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

331

Amino Acids

38.6

Weight (kDa)

5.58

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	42 - 71	6.3e-11	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	74 - 104	4e-06	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	662
Acc65I	GGTACC	1 cut(s)	681
AccB1I	GGYRCC	2 cut(s)	345, 681
AccBSI	CCGCTC	1 cut(s)	47
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	47, 355
AclWI	GGATC	3 cut(s)	58, 168, 813
AcoI	YGGCCR	2 cut(s)	102, 204
AcsI	RAATTY	3 cut(s)	122, 735, 867
AcuI	CTGAAG	1 cut(s)	642
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	2 cut(s)	113, 683
AfiI	CCNNNNNNNGG	4 cut(s)	100, 253, 529, 593
AgsI	TTSAA	5 cut(s)	217, 263, 476, 527, 844
AhlI	ACTAGT	1 cut(s)	380
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	591
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	6 cut(s)	52, 193, 608, 672, 908, 947
AluI	AGCT	6 cut(s)	52, 193, 608, 672, 908, 947
Alw21I	GWGCWC	2 cut(s)	54, 797
Alw26I	GTCTC	2 cut(s)	125, 459
AlwI	GGATC	3 cut(s)	58, 168, 813
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	4 cut(s)	86, 102, 204, 598
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	3 cut(s)	122, 735, 867
Asp718I	GGTACC	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	185, 252
AspS9I	GGNCC	3 cut(s)	28, 86, 598
AsuC2I	CCSGG	3 cut(s)	68, 95, 222
AsuHPI	GGTGA	2 cut(s)	400, 506
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	28
BalI	TGGCCA	2 cut(s)	104, 206
BanI	GGYRCC	2 cut(s)	345, 681
BanII	GRGCYC	2 cut(s)	54, 154
Bbv12I	GWGCWC	2 cut(s)	54, 797
BbvI	GCAGC	1 cut(s)	895
BccI	CCATC	3 cut(s)	130, 215, 653
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	411
BcnI	CCSGG	3 cut(s)	68, 95, 222
BcoDI	GTCTC	2 cut(s)	125, 459
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	1 cut(s)	909
BlsI	GCNGC	1 cut(s)	910
Bme1390I	CCNGG	4 cut(s)	68, 95, 222, 593
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	28, 86, 598
BmiI	GGNNCC	5 cut(s)	29, 30, 347, 599, 683
BmrFI	CCNGG	4 cut(s)	68, 95, 222, 593
BmsI	GCATC	2 cut(s)	838, 847
BoxI	GACNNNNGTC	1 cut(s)	510
BplI	GAGNNNNNCTC	4 cut(s)	36, 68, 182, 214
BpuEI	CTTGAG	2 cut(s)	209, 773
BpuMI	CCSGG	3 cut(s)	68, 95, 222
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	5 cut(s)	201, 220, 393, 426, 592
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 253, 529, 593
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	5 cut(s)	201, 220, 393, 426, 592
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	4 cut(s)	100, 253, 529, 593
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	895
BseYI	CCCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	4 cut(s)	88, 104, 206, 600
BshNI	GGYRCC	2 cut(s)	345, 681
BsiHKAI	GWGCWC	2 cut(s)	54, 797
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	4 cut(s)	68, 95, 222, 247
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	4 cut(s)	100, 253, 529, 593
BsmAI	GTCTC	2 cut(s)	125, 459
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	4 cut(s)	88, 104, 206, 600
Bso31I	GGTCTC	1 cut(s)	459
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	54, 154, 797
Bsp143I	GATC	5 cut(s)	63, 173, 277, 581, 805
Bsp19I	CCATGG	2 cut(s)	201, 426
BspACI	CCGC	2 cut(s)	47, 355
BspANI	GGCC	4 cut(s)	88, 104, 206, 600
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	5 cut(s)	29, 30, 347, 599, 683
BspMI	ACCTGC	1 cut(s)	662
BspPI	GGATC	3 cut(s)	58, 168, 813
BspT107I	GGYRCC	2 cut(s)	345, 681
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	201, 220, 393, 426, 592
BssMI	GATC	5 cut(s)	63, 173, 277, 581, 805
BssT1I	CCWWGG	2 cut(s)	201, 426
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstC8I	GCNNGC	2 cut(s)	285, 974
BstDEI	CTNAG	3 cut(s)	35, 401, 435
BstDSI	CCRYGG	2 cut(s)	201, 426
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	862
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	185, 252
BstKTI	GATC	5 cut(s)	66, 176, 280, 584, 808
BstMAI	GTCTC	2 cut(s)	125, 459
BstMBI	GATC	5 cut(s)	63, 173, 277, 581, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	247, 256, 293, 352, 857, 908
BstNI	CCWGG	1 cut(s)	593
BstPAI	GACNNNNGTC	1 cut(s)	510
BstSCI	CCNGG	4 cut(s)	66, 93, 220, 591
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	895
BstX2I	RGATCY	2 cut(s)	581, 805
BstYI	RGATCY	2 cut(s)	581, 805
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	88, 104, 206, 600
BtgI	CCRYGG	2 cut(s)	201, 426
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	2 cut(s)	285, 974
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	2 cut(s)	185, 252
Cfr13I	GGNCC	3 cut(s)	28, 86, 598
Csp6I	GTAC	2 cut(s)	112, 682
CviAII	CATG	6 cut(s)	202, 275, 427, 446, 675, 818
CviQI	GTAC	2 cut(s)	112, 682
DdeI	CTNAG	3 cut(s)	35, 401, 435
DpnI	GATC	5 cut(s)	65, 175, 279, 583, 807
DpnII	GATC	5 cut(s)	63, 173, 277, 581, 805
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	102, 204
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	201, 426
Eco24I	GRGCYC	2 cut(s)	54, 154
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoO109I	RGGNCCY	2 cut(s)	28, 598
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	201, 426
EcoT38I	GRGCYC	2 cut(s)	54, 154
ErhI	CCWWGG	2 cut(s)	201, 426
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	6 cut(s)	205, 278, 430, 449, 678, 821
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	201, 274, 426, 445, 674, 817
FauNDI	CATATG	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	909
FokI	GGATG	1 cut(s)	869
FriOI	GRGCYC	2 cut(s)	54, 154
Fsp4HI	GCNGC	1 cut(s)	909
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	2 cut(s)	184, 251
GluI	GCNGC	1 cut(s)	909
GsaI	CCCAGC	1 cut(s)	493
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	4 cut(s)	88, 104, 206, 600
HapII	CCGG	4 cut(s)	68, 95, 222, 247
HhaI	GCGC	2 cut(s)	185, 252
Hin1II	CATG	6 cut(s)	205, 278, 430, 449, 678, 821
Hin6I	GCGC	2 cut(s)	183, 250
HinP1I	GCGC	2 cut(s)	183, 250
HinfI	GANTC	8 cut(s)	5, 431, 556, 617, 875, 890, 926, 935
HpaII	CCGG	4 cut(s)	68, 95, 222, 247
HphI	GGTGA	2 cut(s)	400, 506
Hpy166II	GTNNAC	2 cut(s)	408, 724
Hpy188I	TCNGA	8 cut(s)	10, 58, 128, 149, 561, 622, 874, 895
Hpy188III	TCNNGA	3 cut(s)	188, 275, 527
Hpy8I	GTNNAC	2 cut(s)	408, 724
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	533, 695
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	60, 307
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	6 cut(s)	247, 256, 293, 352, 857, 908
HpyF3I	CTNAG	3 cut(s)	35, 401, 435
HpySE526I	ACGT	2 cut(s)	60, 307
Hsp92II	CATG	6 cut(s)	205, 278, 430, 449, 678, 821
HspAI	GCGC	2 cut(s)	183, 250
KflI	GGGWCCC	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	685
Kzo9I	GATC	5 cut(s)	63, 173, 277, 581, 805
LmnI	GCTCC	2 cut(s)	19, 49
Lsp1109I	GCAGC	1 cut(s)	895
LweI	GCATC	2 cut(s)	838, 847
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	2 cut(s)	60, 307
MaeIII	GTNAC	2 cut(s)	512, 649
MalI	GATC	5 cut(s)	65, 175, 279, 583, 807
MbiI	CCGCTC	1 cut(s)	47
MboI	GATC	5 cut(s)	63, 173, 277, 581, 805
MboII	GAAGA	4 cut(s)	26, 131, 464, 732
MflI	RGATCY	2 cut(s)	581, 805
MhlI	GDGCHC	3 cut(s)	54, 154, 797
MlsI	TGGCCA	2 cut(s)	104, 206
MluCI	AATT	7 cut(s)	122, 331, 371, 544, 709, 735, 867
MluNI	TGGCCA	2 cut(s)	104, 206
MlyI	GAGTC	3 cut(s)	14, 626, 869
MmeI	TCCRAC	1 cut(s)	850
Mox20I	TGGCCA	2 cut(s)	104, 206
MscI	TGGCCA	2 cut(s)	104, 206
MseI	TTAA	3 cut(s)	540, 639, 991
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	2 cut(s)	104, 206
MspI	CCGG	4 cut(s)	68, 95, 222, 247
MspR9I	CCNGG	4 cut(s)	68, 95, 222, 593
MvaI	CCWGG	1 cut(s)	593
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	6 cut(s)	247, 256, 293, 352, 857, 908
NciI	CCSGG	3 cut(s)	68, 95, 222
NcoI	CCATGG	2 cut(s)	201, 426
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	5 cut(s)	63, 173, 277, 581, 805
NlaIII	CATG	6 cut(s)	205, 278, 430, 449, 678, 821
NlaIV	GGNNCC	5 cut(s)	29, 30, 347, 599, 683
NmuCI	GTSAC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	274
PfeI	GAWTC	5 cut(s)	431, 556, 890, 926, 935
PkrI	GCNGC	1 cut(s)	910
PleI	GAGTC	3 cut(s)	13, 625, 869
PpsI	GAGTC	3 cut(s)	13, 625, 869
PpuMI	RGGWCCY	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	761
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	5 cut(s)	29, 30, 347, 599, 683
PspPI	GGNCC	3 cut(s)	28, 86, 598
PspPPI	RGGWCCY	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	370, 402
PsuI	RGATCY	2 cut(s)	581, 805
RsaI	GTAC	2 cut(s)	113, 683
RsaNI	GTAC	2 cut(s)	112, 682
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	540, 639, 991
SatI	GCNGC	1 cut(s)	909
Sau3AI	GATC	5 cut(s)	63, 173, 277, 581, 805
Sau96I	GGNCC	3 cut(s)	28, 86, 598
SchI	GAGTC	3 cut(s)	14, 626, 869
ScrFI	CCNGG	4 cut(s)	68, 95, 222, 593
SduI	GDGCHC	3 cut(s)	54, 154, 797
SfaNI	GCATC	2 cut(s)	838, 847
SinI	GGWCC	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	2 cut(s)	188, 752
SmoI	CTYRAG	2 cut(s)	188, 752
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	7 cut(s)	122, 331, 371, 544, 709, 735, 867
SsiI	CCGC	2 cut(s)	47, 355
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	4 cut(s)	66, 93, 220, 591
StyI	CCWWGG	2 cut(s)	201, 426
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	63, 310
TaqI	TCGA	2 cut(s)	210, 688
TasI	AATT	7 cut(s)	122, 331, 371, 544, 709, 735, 867
TfiI	GAWTC	5 cut(s)	431, 556, 890, 926, 935
Tru1I	TTAA	3 cut(s)	540, 639, 991
Tru9I	TTAA	3 cut(s)	540, 639, 991
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	681, 927
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	28
XagI	CCTNNNNNAGG	1 cut(s)	527
XapI	RAATTY	3 cut(s)	122, 735, 867
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.