Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Reverse (-)

27388206 .. 27390547

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCGTCGTCGTCGTCAGACGAAGAGGGGCGGTGGGTCCCACTAAGGAGTAGACCGGAGTTTTCGGACGTGATCCCGGTGGAGCAAGACGACGGGCCGAATCCGGTGGTTCCGATAACCTACAAGGAAGAGTTCCGAGAGACCATGGACTACTTCCGAGCCCTGTACAAAGCCGATGAGCGATCCCTTCGCGCCCTTCACCTCACTTCCGAAGCCATCCAATTCAACCCTGGAAACTACACTGTATGGCACTTTAGGCGTTTGGTACTTGAGGCACTCAATCATGATTTGCACGATGAACTTGCTCTGACTGAACACATTGCTCGAGGAAACTCCAAAAACTATCAGTTATGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGAAGACGAACTTGACTATTGTCAGCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATCACCGTTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGGCATTGTTGCCCGCCCAGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCATCTTGGGTAAACAATCCTCAAATTTCTTCAGTATGCTTGGAGATTTTAAATGCCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTCCAACCAAGCCAAGAGTTCACAGATGCTGTGGATGCTCTACGAATTTCAGACTCCGAACAAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTTTGTCTTGGAATCTGTTGATCCATTTAGAGCTAACTATTGGCAGTGGTACAAGAACAAGCATTTCCAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

333

Amino Acids

38.83

Weight (kDa)

5.41

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	64 - 92	3.2e-07	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	97 - 127	7.9e-09	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	135 - 164	2.2e-10	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	167 - 197	1.3e-07	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	690
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	31, 364, 664
AclWI	GGATC	4 cut(s)	67, 177, 822, 938
AcsI	RAATTY	2 cut(s)	744, 876
AcuI	CTGAAG	3 cut(s)	467, 651, 735
AfaI	GTAC	4 cut(s)	167, 267, 692, 974
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	2 cut(s)	226, 536
AhlI	ACTAGT	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	229, 600
AloI	GAACNNNNNNTCC	4 cut(s)	398, 416, 430, 448
AluBI	AGCT	6 cut(s)	374, 529, 617, 681, 917, 956
AluI	AGCT	6 cut(s)	374, 529, 617, 681, 917, 956
Alw21I	GWGCWC	1 cut(s)	806
Alw26I	GTCTC	2 cut(s)	134, 468
AlwI	GGATC	4 cut(s)	67, 177, 822, 938
AlwNI	CAGNNNCTG	1 cut(s)	860
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	2 cut(s)	95, 607
ApeKI	GCWGC	2 cut(s)	526, 917
ApoI	RAATTY	2 cut(s)	744, 876
Asp718I	GGTACC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	37, 95
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	191, 409, 585
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	510, 546
Bbv12I	GWGCWC	1 cut(s)	806
BbvI	GCAGC	2 cut(s)	538, 904
BccI	CCATC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	231, 602
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	134, 468
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	2 cut(s)	527, 918
BlsI	GCNGC	2 cut(s)	528, 919
Bme1390I	CCNGG	3 cut(s)	77, 231, 602
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	37, 95
BmiI	GGNNCC	4 cut(s)	38, 39, 111, 692
BmrFI	CCNGG	3 cut(s)	77, 231, 602
BmsI	GCATC	4 cut(s)	364, 430, 847, 856
BoxI	GACNNNNGTC	1 cut(s)	519
BpiI	GAAGAC	2 cut(s)	510, 546
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	77
BsaI	GGTCTC	2 cut(s)	134, 468
BsaJI	CCNNGG	5 cut(s)	144, 229, 402, 601, 826
BsaWI	WCCGGW	2 cut(s)	55, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	231, 602
BseDI	CCNNGG	5 cut(s)	144, 229, 402, 601, 826
BseGI	GGATG	2 cut(s)	216, 871
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	538, 904
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	97, 609
BshNI	GGYRCC	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	806
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	56, 77, 104
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	134, 468
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	97, 609
Bso31I	GGTCTC	2 cut(s)	134, 468
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	163, 806
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	72, 182, 590, 814, 943
Bsp19I	CCATGG	2 cut(s)	144, 826
BspACI	CCGC	3 cut(s)	31, 364, 664
BspANI	GGCC	2 cut(s)	97, 609
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	38, 39, 111, 692
BspPI	GGATC	4 cut(s)	67, 177, 822, 938
BspT107I	GGYRCC	1 cut(s)	690
BspTNI	GGTCTC	2 cut(s)	134, 468
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	165
BssECI	CCNNGG	5 cut(s)	144, 229, 402, 601, 826
BssMI	GATC	5 cut(s)	72, 182, 590, 814, 943
BssT1I	CCWWGG	2 cut(s)	144, 826
Bst2UI	CCWGG	2 cut(s)	231, 602
Bst4CI	ACNGT	3 cut(s)	244, 597, 788
Bst6I	CTCTTC	2 cut(s)	18, 123
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	3 cut(s)	44, 375, 410
BstDSI	CCRYGG	2 cut(s)	144, 826
BstF5I	GGATG	2 cut(s)	216, 871
BstFNI	CGCG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	75, 185, 593, 817, 946
BstMAI	GTCTC	2 cut(s)	134, 468
BstMBI	GATC	5 cut(s)	72, 182, 590, 814, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 361, 866, 917
BstNI	CCWGG	2 cut(s)	231, 602
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	75, 229, 600
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	538, 904
BstV2I	GAAGAC	2 cut(s)	510, 546
BstX2I	RGATCY	1 cut(s)	814
BstYI	RGATCY	1 cut(s)	814
BsuRI	GGCC	2 cut(s)	97, 609
BtgI	CCRYGG	2 cut(s)	144, 826
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	2 cut(s)	216, 871
BtsI	GCAGTG	2 cut(s)	479, 974
BtsIMutI	CAGTG	3 cut(s)	240, 479, 974
Cac8I	GCNNGC	1 cut(s)	664
CaiI	CAGNNNCTG	1 cut(s)	860
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	37, 95
Csp6I	GTAC	4 cut(s)	166, 266, 691, 973
CviAII	CATG	5 cut(s)	145, 284, 455, 684, 827
CviQI	GTAC	4 cut(s)	166, 266, 691, 973
DdeI	CTNAG	3 cut(s)	44, 375, 410
DpnI	GATC	5 cut(s)	74, 184, 592, 816, 945
DpnII	GATC	5 cut(s)	72, 182, 590, 814, 943
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	18, 123
EarI	CTCTTC	2 cut(s)	18, 123
Eco130I	CCWWGG	2 cut(s)	144, 826
Eco147I	AGGCCT	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	163
Eco31I	GGTCTC	2 cut(s)	134, 468
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	3 cut(s)	467, 651, 735
Eco88I	CYCGRG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	229, 600
EcoT14I	CCWWGG	2 cut(s)	144, 826
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	144, 826
FaeI	CATG	5 cut(s)	148, 287, 458, 687, 830
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	5 cut(s)	144, 283, 454, 683, 826
FauI	CCCGC	1 cut(s)	671
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	527, 918
FokI	GGATG	2 cut(s)	203, 878
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	527, 918
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	2 cut(s)	527, 918
HaeIII	GGCC	2 cut(s)	97, 609
HapII	CCGG	3 cut(s)	56, 77, 104
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	148, 287, 458, 687, 830
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	6 cut(s)	100, 565, 626, 884, 899, 935
HpaII	CCGG	3 cut(s)	56, 77, 104
HphI	GGTGA	3 cut(s)	191, 409, 585
Hpy166II	GTNNAC	4 cut(s)	53, 417, 733, 852
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	4 cut(s)	53, 417, 733, 852
Hpy99I	CGWCG	4 cut(s)	10, 13, 16, 95
HpyAV	CCTTC	3 cut(s)	197, 206, 704
HpyCH4III	ACNGT	3 cut(s)	244, 597, 788
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 361, 866, 917
HpyF3I	CTNAG	3 cut(s)	44, 375, 410
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	148, 287, 458, 687, 830
HspAI	GCGC	1 cut(s)	192
KflI	GGGWCCC	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	72, 182, 590, 814, 943
LmnI	GCTCC	2 cut(s)	82, 534
Lsp1109I	GCAGC	2 cut(s)	538, 904
LweI	GCATC	4 cut(s)	364, 430, 847, 856
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	69
MalI	GATC	5 cut(s)	74, 184, 592, 816, 945
MboI	GATC	5 cut(s)	72, 182, 590, 814, 943
MboII	GAAGA	7 cut(s)	35, 140, 473, 515, 548, 551, 741
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	2 cut(s)	163, 806
MluCI	AATT	6 cut(s)	221, 380, 553, 718, 744, 876
MlyI	GAGTC	2 cut(s)	635, 878
MmeI	TCCRAC	1 cut(s)	859
MseI	TTAA	4 cut(s)	549, 648, 770, 1000
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	3 cut(s)	56, 77, 104
MspR9I	CCNGG	3 cut(s)	77, 231, 602
MvaI	CCWGG	2 cut(s)	231, 602
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	4 cut(s)	256, 361, 866, 917
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	2 cut(s)	144, 826
NdeII	GATC	5 cut(s)	72, 182, 590, 814, 943
NlaIII	CATG	5 cut(s)	148, 287, 458, 687, 830
NlaIV	GGNNCC	4 cut(s)	38, 39, 111, 692
PaeR7I	CTCGAG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	100, 565, 899, 935
PkrI	GCNGC	2 cut(s)	528, 919
PleI	GAGTC	2 cut(s)	634, 878
PpsI	GAGTC	2 cut(s)	634, 878
PpuMI	RGGWCCY	1 cut(s)	37
PshAI	GACNNNNGTC	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	229, 600
PspGI	CCWGG	2 cut(s)	229, 600
PspN4I	GGNNCC	4 cut(s)	38, 39, 111, 692
PspPI	GGNCC	2 cut(s)	37, 95
PspPPI	RGGWCCY	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	324
PsrI	GAACNNNNNNTAC	2 cut(s)	379, 411
PstNI	CAGNNNCTG	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	814
RsaI	GTAC	4 cut(s)	167, 267, 692, 974
RsaNI	GTAC	4 cut(s)	166, 266, 691, 973
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	549, 648, 770, 1000
SatI	GCNGC	2 cut(s)	527, 918
Sau3AI	GATC	5 cut(s)	72, 182, 590, 814, 943
Sau96I	GGNCC	2 cut(s)	37, 95
SchI	GAGTC	2 cut(s)	635, 878
ScrFI	CCNGG	3 cut(s)	77, 231, 602
SduI	GDGCHC	2 cut(s)	163, 806
SfaNI	GCATC	4 cut(s)	364, 430, 847, 856
Sfr274I	CTCGAG	1 cut(s)	324
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	269, 324
SmoI	CTYRAG	2 cut(s)	269, 324
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	6 cut(s)	221, 380, 553, 718, 744, 876
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	3 cut(s)	31, 364, 664
SspMI	CTAG	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	3 cut(s)	75, 229, 600
StyI	CCWWGG	2 cut(s)	144, 826
TaaI	ACNGT	3 cut(s)	244, 597, 788
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	2 cut(s)	325, 697
TasI	AATT	6 cut(s)	221, 380, 553, 718, 744, 876
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	4 cut(s)	100, 565, 899, 935
Tru1I	TTAA	4 cut(s)	549, 648, 770, 1000
Tru9I	TTAA	4 cut(s)	549, 648, 770, 1000
TscAI	CASTG	3 cut(s)	247, 479, 974
TseI	GCWGC	2 cut(s)	526, 917
TspDTI	ATGAA	3 cut(s)	312, 690, 711
TspRI	CASTG	3 cut(s)	247, 479, 974
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	744, 876
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.