Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Forward (+)

3063177 .. 3065814

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACAGAAAGAGAGATGGGCTCGGACGAAGAACAACAGTGGGTCCCATTCAAGAATAGGCCGGAATGGTCGGACGTGATTCCGGTCGAGCAAGACGACGGTCCGAACCCGGTCGTCCCGATAGCCTACAAGGAACAGTTCACAGAGACGATGAACTACTTCCGAGCCGTCTACAAAGCCGACGAGCGATCGCCTCGCGCCCTTCAGCTCACCACCGAAGCCATCGGATTGAATTCAGGAAACTACACCATATGGCATTACAGGCGCTTAATACTGGAGACCCTTAAAGCTGATTTACAGAATGAACTTGATTTCACCGATCAGATTGCGCAGATTAACTCCAAAAATTATCAGTTGTGGCATCATCGGCGGTGGGTTGCTGAGATATTGGGAGCTAATGCTACAAGTGCGGAACTTGAGTTTACAAAGAAGATACTCTTGGGTGATGCTAAAAACTATCATGCTTGGTCTCATAGGCAGTGGGTTCTCAAGGAACTTGGAGGGTGGGAAAATGAACTTGACTATTGTTGGGAGCTCCTTGAAGAAGACGTTTTTAACAATTCTGCTTGGAATCAGAGATTTTTTGTCATTACAAGATCTCCACTCCTGGGAGGCCTAACAGCTATGAGAGAGTCTGAAGTGTCTTATACTCTTAAAGCCATTGTAGCCCACCCAGAGAATGAGAGTTCATGGAGATACCTACGAGGGCTTTACAAAAACGACAACTGGTCTTGGGCAAACGACCCTCAAATTGCTTCAGTATGCTTGAAGGTTTTAAGTGCCAACAATGATTGTATCTTTGCTTTGAGCACACTTTTGGATCTCATCCGCCATGGTTTCCAAGCAAGCAAAGAGCTCAGAGATGCTGTGGATGCTATAAGAAACTCAAACTTGGTAGAAGCAGAATCGGACTTGACAAAAACTATTTGTTCACTCTTGGAAAAGCTTGATCCGATAAGAGTTAACTATTGGAAGTGGCGTAAGAGCATCCTCTGCGAAGGTGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

337

Amino Acids

39.12

Weight (kDa)

5.26

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	198
AciI	CCGC	3 cut(s)	370, 410, 829
AclWI	GGATC	2 cut(s)	828, 944
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	3 cut(s)	188, 657, 741
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	52, 232, 542, 769
AhdI	GACNNNNNGTC	1 cut(s)	727
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	606
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	7 cut(s)	208, 290, 395, 535, 623, 856, 946
AluI	AGCT	7 cut(s)	208, 290, 395, 535, 623, 856, 946
Alw21I	GWGCWC	3 cut(s)	537, 812, 858
Alw26I	GTCTC	3 cut(s)	140, 272, 474
AlwI	GGATC	2 cut(s)	828, 944
AoxI	GGCC	2 cut(s)	59, 613
ApoI	RAATTY	1 cut(s)	232
AsiSI	GCGATCGC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	3 cut(s)	200, 267, 331
AspS9I	GGNCC	2 cut(s)	43, 101
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	202, 307, 455
AvaII	GGWCC	2 cut(s)	43, 101
BanII	GRGCYC	3 cut(s)	23, 537, 858
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	3 cut(s)	537, 812, 858
BccI	CCATC	2 cut(s)	10, 230
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	608
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	140, 272, 474
BfoI	RGCGCY	1 cut(s)	268
BglII	AGATCT	1 cut(s)	596
Bme1390I	CCNGG	2 cut(s)	110, 608
Bme18I	GGWCC	2 cut(s)	43, 101
BmeRI	GACNNNNNGTC	1 cut(s)	727
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	43, 101
BmiI	GGNNCC	2 cut(s)	44, 45
BmrFI	CCNGG	2 cut(s)	110, 608
BmsI	GCATC	5 cut(s)	370, 436, 853, 862, 996
BoxI	GACNNNNGTC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	2 cut(s)	437, 473
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	272, 474
BsaJI	CCNNGG	2 cut(s)	607, 832
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	2 cut(s)	279, 731
BseBI	CCWGG	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	607, 832
BseGI	GGATG	3 cut(s)	825, 877, 987
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	372, 871
BseNI	ACTGG	2 cut(s)	279, 731
Bsh1236I	CGCG	1 cut(s)	198
Bsh1285I	CGRYCG	3 cut(s)	87, 114, 191
BshFI	GGCC	2 cut(s)	61, 615
BsiEI	CGRYCG	3 cut(s)	87, 114, 191
BsiHKAI	GWGCWC	3 cut(s)	537, 812, 858
BsiSI	CCGG	3 cut(s)	62, 83, 110
BslFI	GGGAC	2 cut(s)	29, 101
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	3 cut(s)	140, 272, 474
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	29, 101
BsnI	GGCC	2 cut(s)	61, 615
Bso31I	GGTCTC	2 cut(s)	272, 474
Bsp1286I	GDGCHC	4 cut(s)	23, 537, 812, 858
Bsp143I	GATC	5 cut(s)	188, 319, 596, 820, 949
Bsp19I	CCATGG	1 cut(s)	832
BspACI	CCGC	3 cut(s)	370, 410, 829
BspANI	GGCC	2 cut(s)	61, 615
BspCNI	CTCAG	2 cut(s)	373, 870
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	44, 45
BspPI	GGATC	2 cut(s)	828, 944
BspTNI	GGTCTC	2 cut(s)	272, 474
BsrI	ACTGG	2 cut(s)	279, 731
BssECI	CCNNGG	2 cut(s)	607, 832
BssMI	GATC	5 cut(s)	188, 319, 596, 820, 949
BssT1I	CCWWGG	1 cut(s)	832
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	3 cut(s)	39, 101, 138
BstAPI	GCANNNNNTGC	1 cut(s)	993
BstC8I	GCNNGC	1 cut(s)	847
BstDEI	CTNAG	2 cut(s)	381, 857
BstDSI	CCRYGG	1 cut(s)	832
BstF5I	GGATG	3 cut(s)	825, 877, 987
BstFNI	CGCG	1 cut(s)	198
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	200, 267, 331
BstKTI	GATC	5 cut(s)	191, 322, 599, 823, 952
BstMAI	GTCTC	3 cut(s)	140, 272, 474
BstMBI	GATC	5 cut(s)	188, 319, 596, 820, 949
BstMCI	CGRYCG	3 cut(s)	87, 114, 191
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 367, 407, 665, 872, 993
BstNI	CCWGG	1 cut(s)	608
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	108, 606
BstUI	CGCG	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	596, 820
BstYI	RGATCY	2 cut(s)	596, 820
BsuRI	GGCC	2 cut(s)	61, 615
BtgI	CCRYGG	1 cut(s)	832
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	825, 877, 987
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	44, 485
Cac8I	GCNNGC	1 cut(s)	847
CfoI	GCGC	3 cut(s)	200, 267, 331
Cfr13I	GGNCC	2 cut(s)	43, 101
CpoI	CGGWCCG	1 cut(s)	101
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	3 cut(s)	461, 690, 833
DdeI	CTNAG	2 cut(s)	381, 857
DpnI	GATC	5 cut(s)	190, 321, 598, 822, 951
DpnII	GATC	5 cut(s)	188, 319, 596, 820, 949
DriI	GACNNNNNGTC	1 cut(s)	727
Eam1105I	GACNNNNNGTC	1 cut(s)	727
EciI	GGCGGA	1 cut(s)	818
Ecl136II	GAGCTC	2 cut(s)	535, 856
Eco130I	CCWWGG	1 cut(s)	832
Eco147I	AGGCCT	1 cut(s)	615
Eco24I	GRGCYC	3 cut(s)	23, 537, 858
Eco31I	GGTCTC	2 cut(s)	272, 474
Eco47I	GGWCC	2 cut(s)	43, 101
Eco53kI	GAGCTC	2 cut(s)	535, 856
Eco57I	CTGAAG	3 cut(s)	188, 657, 741
EcoICRI	GAGCTC	2 cut(s)	535, 856
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	832
EcoT38I	GRGCYC	3 cut(s)	23, 537, 858
ErhI	CCWWGG	1 cut(s)	832
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	464, 693, 836
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	2 cut(s)	29, 101
FatI	CATG	3 cut(s)	460, 689, 832
FauNDI	CATATG	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	171
FokI	GGATG	3 cut(s)	812, 884, 974
FriOI	GRGCYC	3 cut(s)	23, 537, 858
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	3 cut(s)	199, 266, 330
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	61, 615
HapII	CCGG	3 cut(s)	62, 83, 110
HhaI	GCGC	3 cut(s)	200, 267, 331
Hin1II	CATG	3 cut(s)	464, 693, 836
Hin6I	GCGC	3 cut(s)	198, 265, 329
HinP1I	GCGC	3 cut(s)	198, 265, 329
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	4 cut(s)	79, 571, 632, 905
HpaI	GTTAAC	1 cut(s)	964
HpaII	CCGG	3 cut(s)	62, 83, 110
HphI	GGTGA	3 cut(s)	202, 307, 455
Hpy166II	GTNNAC	5 cut(s)	141, 172, 423, 932, 964
Hpy188III	TCNNGA	3 cut(s)	52, 118, 237
Hpy8I	GTNNAC	5 cut(s)	141, 172, 423, 932, 964
Hpy99I	CGWCG	2 cut(s)	101, 185
HpyAV	CCTTC	3 cut(s)	212, 763, 992
HpyCH4III	ACNGT	3 cut(s)	39, 101, 138
HpyCH4IV	ACGT	2 cut(s)	75, 549
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 367, 407, 665, 872, 993
HpyF3I	CTNAG	2 cut(s)	381, 857
HpySE526I	ACGT	2 cut(s)	75, 549
Hsp92II	CATG	3 cut(s)	464, 693, 836
HspAI	GCGC	3 cut(s)	198, 265, 329
KflI	GGGWCCC	1 cut(s)	43
KspAI	GTTAAC	1 cut(s)	964
Kzo9I	GATC	5 cut(s)	188, 319, 596, 820, 949
LmnI	GCTCC	3 cut(s)	392, 532, 540
LweI	GCATC	5 cut(s)	370, 436, 853, 862, 996
MaeII	ACGT	2 cut(s)	75, 549
MalI	GATC	5 cut(s)	190, 321, 598, 822, 951
MboI	GATC	5 cut(s)	188, 319, 596, 820, 949
MboII	GAAGA	4 cut(s)	41, 442, 554, 557
MflI	RGATCY	2 cut(s)	596, 820
MhlI	GDGCHC	4 cut(s)	23, 537, 812, 858
MluCI	AATT	4 cut(s)	232, 346, 559, 750
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	204, 494, 605, 698, 756, 1001
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	7 cut(s)	269, 285, 336, 555, 654, 776, 963
MspI	CCGG	3 cut(s)	62, 83, 110
MspR9I	CCNGG	2 cut(s)	110, 608
MvaI	CCWGG	1 cut(s)	608
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	262, 367, 407, 665, 872, 993
NciI	CCSGG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	832
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	5 cut(s)	188, 319, 596, 820, 949
NlaIII	CATG	3 cut(s)	464, 693, 836
NlaIV	GGNNCC	2 cut(s)	44, 45
NsbI	TGCGCA	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	79, 571, 905
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	1 cut(s)	640
PpsI	GAGTC	1 cut(s)	640
PpuMI	RGGWCCY	1 cut(s)	43
PshAI	GACNNNNGTC	1 cut(s)	99
Psp124BI	GAGCTC	2 cut(s)	537, 858
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	44, 45
PspPI	GGNCC	2 cut(s)	43, 101
PspPPI	RGGWCCY	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	596, 820
PvuI	CGATCG	1 cut(s)	191
RgaI	GCGATCGC	1 cut(s)	191
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SacI	GAGCTC	2 cut(s)	537, 858
SaqAI	TTAA	7 cut(s)	269, 285, 336, 555, 654, 776, 963
Sau3AI	GATC	5 cut(s)	188, 319, 596, 820, 949
Sau96I	GGNCC	2 cut(s)	43, 101
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	110, 608
SduI	GDGCHC	4 cut(s)	23, 537, 812, 858
SfaAI	GCGATCGC	1 cut(s)	191
SfaNI	GCATC	5 cut(s)	370, 436, 853, 862, 996
SgfI	GCGATCGC	1 cut(s)	191
SinI	GGWCC	2 cut(s)	43, 101
SmlI	CTYRAG	2 cut(s)	416, 488
SmoI	CTYRAG	2 cut(s)	416, 488
Sse9I	AATT	4 cut(s)	232, 346, 559, 750
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	3 cut(s)	370, 410, 829
SstI	GAGCTC	2 cut(s)	537, 858
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	108, 606
StyI	CCWWGG	1 cut(s)	832
TaaI	ACNGT	3 cut(s)	39, 101, 138
TaiI	ACGT	2 cut(s)	78, 552
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	232, 346, 559, 750
TfiI	GAWTC	3 cut(s)	79, 571, 905
Tru1I	TTAA	7 cut(s)	269, 285, 336, 555, 654, 776, 963
Tru9I	TTAA	7 cut(s)	269, 285, 336, 555, 654, 776, 963
TscAI	CASTG	2 cut(s)	44, 485
TspDTI	ATGAA	4 cut(s)	167, 318, 528, 678
TspRI	CASTG	2 cut(s)	44, 485
VpaK11BI	GGWCC	2 cut(s)	43, 101
XapI	RAATTY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.