Rh4CG148800

Protein farnesyltransferase geranylgeranyltransferase type-1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012140
Physical Location & Seq
Reverse (-)
32794118 .. 32796589
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG148800.1

Sequence Viewer

Length: 1002 bp
ATGTCGTCGTCGTCGTCAGACGAAGAGCGGCGGTGGGTCCCACTAAGGAGTAGACCGGAGTTTTCGGACGTGATCCCGGTGGAGCAAGACGACGGGCCGAATCCGGTGGTTCCGATAACCTACAAGGAAGAGTTCCGAGAGACCATGGACTACTTCCGAGCCCTGTACAAAGCCGATGAGCGATCCCTTCGCGCCCTTCACCTCACTTCCGAAGCCATCCAATTCAACCCTGGAAACTACACTGTATGGCACTTTAGGCGTTTAGTACTTGAGGCAATCAATCATGATTTGCACGATGAACTTGCTCTGACTGAACACATTGCTCGAGGAAACTCCAAAAACTATCAGTTATGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGAAGACGAACTTGACTATTGTCAGCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATCACCATTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGGCATTGTTGCCCGCCCAGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCATCTTGGGTAAACAATCCTCAAATTTCTTCAGTATGCTTGGACATTTTAAATGCCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTTCAACCAAGCCAAGAGTTCACAGATGCTGTGGATGCTCTACGAATTTCAGACTCCGAACAAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTTTGTCTTGGAATCTGTCGATCCATTTAGAGCTAACTATTGGCAGTGGTACAAGAACAAGCATTTCCAAAATGCTTAA

Protein Analysis

333

Amino Acids

38.92

Weight (kDa)

5.49

Isoelectric Point (pI)

58.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPTA PF01239 64 - 92 4.3e-07 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 97 - 127 7.9e-09 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 135 - 164 2.2e-10 Protein prenyltransferase alpha subunit repeat
PPTA PF01239 167 - 197 1.3e-07 Protein prenyltransferase alpha subunit repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012140)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59380
fragaria_vesca FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica MD04G1007300.v1.1
prunus_persica Prupe.1G191500_v2.0.a1
pyrus_communis pycom04g03430
rosa_chinensis RchiOBHm_Chr4g0407031
rosa_laevigata RLG00000008742
rosa_multiflora Rmu_sc0000600.1_g000009
rosa_roxburghii Rroxscaffold_5G00351730
rosa_rugosa Rorug04G0077000
rosa_samantha Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana Rw4G011590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 690
AccB1I GGYRCC 1 cut(s) 690
AccBSI CCGCTC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 52
AccII CGCG 1 cut(s) 192
AciI CCGC 4 cut(s) 28, 31, 364, 664
AclWI GGATC 4 cut(s) 67, 177, 822, 938
AcsI RAATTY 2 cut(s) 744, 876
AcuI CTGAAG 3 cut(s) 467, 651, 735
AfaI GTAC 4 cut(s) 167, 267, 692, 974
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 3 cut(s) 226, 536, 836
AhlI ACTAGT 1 cut(s) 389
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 2 cut(s) 229, 600
AloI GAACNNNNNNTCC 4 cut(s) 398, 416, 430, 448
AluBI AGCT 6 cut(s) 374, 529, 617, 681, 917, 956
AluI AGCT 6 cut(s) 374, 529, 617, 681, 917, 956
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 2 cut(s) 134, 468
AlwI GGATC 4 cut(s) 67, 177, 822, 938
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 2 cut(s) 95, 607
ApeKI GCWGC 2 cut(s) 526, 917
ApoI RAATTY 2 cut(s) 744, 876
Asp718I GGTACC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 37, 95
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 3 cut(s) 191, 409, 585
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 163
BbsI GAAGAC 2 cut(s) 510, 546
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 538, 904
BccI CCATC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BciT130I CCWGG 2 cut(s) 231, 602
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 134, 468
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 1 cut(s) 390
BisI GCNGC 3 cut(s) 29, 527, 918
BlsI GCNGC 3 cut(s) 30, 528, 919
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 3 cut(s) 77, 231, 602
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 37, 95
BmiI GGNNCC 4 cut(s) 38, 39, 111, 692
BmrFI CCNGG 3 cut(s) 77, 231, 602
BmsI GCATC 4 cut(s) 364, 430, 847, 856
BoxI GACNNNNGTC 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 510, 546
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 77
BsaI GGTCTC 2 cut(s) 134, 468
BsaJI CCNNGG 5 cut(s) 144, 229, 402, 601, 826
BsaWI WCCGGW 2 cut(s) 55, 103
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 231, 602
BseDI CCNNGG 5 cut(s) 144, 229, 402, 601, 826
BseGI GGATG 2 cut(s) 216, 871
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 538, 904
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 97, 609
BshNI GGYRCC 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 806
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 3 cut(s) 56, 77, 104
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 2 cut(s) 134, 468
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 2 cut(s) 97, 609
Bso31I GGTCTC 2 cut(s) 134, 468
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 163, 806
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 5 cut(s) 72, 182, 590, 814, 943
Bsp19I CCATGG 2 cut(s) 144, 826
BspACI CCGC 4 cut(s) 28, 31, 364, 664
BspANI GGCC 2 cut(s) 97, 609
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 38, 39, 111, 692
BspPI GGATC 4 cut(s) 67, 177, 822, 938
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 690
BspTNI GGTCTC 2 cut(s) 134, 468
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 165
BssECI CCNNGG 5 cut(s) 144, 229, 402, 601, 826
BssMI GATC 5 cut(s) 72, 182, 590, 814, 943
BssT1I CCWWGG 2 cut(s) 144, 826
Bst2UI CCWGG 2 cut(s) 231, 602
Bst4CI ACNGT 2 cut(s) 244, 788
Bst6I CTCTTC 2 cut(s) 18, 123
BstAPI GCANNNNNTGC 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 664
BstDEI CTNAG 3 cut(s) 44, 375, 410
BstDSI CCRYGG 2 cut(s) 144, 826
BstF5I GGATG 2 cut(s) 216, 871
BstFNI CGCG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 5 cut(s) 75, 185, 593, 817, 946
BstMAI GTCTC 2 cut(s) 134, 468
BstMBI GATC 5 cut(s) 72, 182, 590, 814, 943
BstMWI GCNNNNNNNGC 4 cut(s) 256, 361, 866, 917
BstNI CCWGG 2 cut(s) 231, 602
BstPAI GACNNNNGTC 1 cut(s) 519
BstSCI CCNGG 3 cut(s) 75, 229, 600
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 538, 904
BstV2I GAAGAC 2 cut(s) 510, 546
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BsuRI GGCC 2 cut(s) 97, 609
BtgI CCRYGG 2 cut(s) 144, 826
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 216, 871
BtsI GCAGTG 2 cut(s) 479, 974
BtsIMutI CAGTG 3 cut(s) 240, 479, 974
Cac8I GCNNGC 1 cut(s) 664
CaiI CAGNNNCTG 1 cut(s) 860
CciI TCATGA 1 cut(s) 283
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 37, 95
Csp6I GTAC 4 cut(s) 166, 266, 691, 973
CviAII CATG 5 cut(s) 145, 284, 455, 684, 827
CviQI GTAC 4 cut(s) 166, 266, 691, 973
DdeI CTNAG 3 cut(s) 44, 375, 410
DpnI GATC 5 cut(s) 74, 184, 592, 816, 945
DpnII GATC 5 cut(s) 72, 182, 590, 814, 943
DraI TTTAAA 1 cut(s) 771
Eam1104I CTCTTC 2 cut(s) 18, 123
EarI CTCTTC 2 cut(s) 18, 123
Eco130I CCWWGG 2 cut(s) 144, 826
Eco147I AGGCCT 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 163
Eco31I GGTCTC 2 cut(s) 134, 468
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 3 cut(s) 467, 651, 735
Eco88I CYCGRG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 229, 600
EcoT14I CCWWGG 2 cut(s) 144, 826
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 2 cut(s) 144, 826
FaeI CATG 5 cut(s) 148, 287, 458, 687, 830
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 1 cut(s) 23
FatI CATG 5 cut(s) 144, 283, 454, 683, 826
FauI CCCGC 1 cut(s) 671
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 29, 527, 918
FokI GGATG 2 cut(s) 203, 878
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 29, 527, 918
FspBI CTAG 1 cut(s) 390
GlaI GCGC 1 cut(s) 193
GluI GCNGC 3 cut(s) 29, 527, 918
HaeIII GGCC 2 cut(s) 97, 609
HapII CCGG 3 cut(s) 56, 77, 104
HhaI GCGC 1 cut(s) 194
Hin1II CATG 5 cut(s) 148, 287, 458, 687, 830
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 6 cut(s) 100, 565, 626, 884, 899, 935
HpaII CCGG 3 cut(s) 56, 77, 104
HphI GGTGA 3 cut(s) 191, 409, 585
Hpy166II GTNNAC 4 cut(s) 53, 417, 733, 852
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 4 cut(s) 53, 417, 733, 852
Hpy99I CGWCG 4 cut(s) 10, 13, 16, 95
HpyAV CCTTC 3 cut(s) 197, 206, 704
HpyCH4III ACNGT 2 cut(s) 244, 788
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 361, 866, 917
HpyF3I CTNAG 3 cut(s) 44, 375, 410
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 5 cut(s) 148, 287, 458, 687, 830
HspAI GCGC 1 cut(s) 192
KflI GGGWCCC 1 cut(s) 37
KpnI GGTACC 1 cut(s) 694
Kzo9I GATC 5 cut(s) 72, 182, 590, 814, 943
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 82, 534
Lsp1109I GCAGC 2 cut(s) 538, 904
LweI GCATC 4 cut(s) 364, 430, 847, 856
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 69
MalI GATC 5 cut(s) 74, 184, 592, 816, 945
MbiI CCGCTC 1 cut(s) 28
MboI GATC 5 cut(s) 72, 182, 590, 814, 943
MboII GAAGA 7 cut(s) 35, 140, 473, 515, 548, 551, 741
MflI RGATCY 1 cut(s) 814
MhlI GDGCHC 2 cut(s) 163, 806
MluCI AATT 6 cut(s) 221, 380, 553, 718, 744, 876
MlyI GAGTC 2 cut(s) 635, 878
MnlI CCTC 9 cut(s) 212, 265, 320, 397, 488, 599, 681, 692, 750
MseI TTAA 4 cut(s) 549, 648, 770, 1000
MslI CAYNNNNRTG 1 cut(s) 453
MspI CCGG 3 cut(s) 56, 77, 104
MspR9I CCNGG 3 cut(s) 77, 231, 602
MvaI CCWGG 2 cut(s) 231, 602
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 256, 361, 866, 917
NciI CCSGG 1 cut(s) 77
NcoI CCATGG 2 cut(s) 144, 826
NdeII GATC 5 cut(s) 72, 182, 590, 814, 943
NlaIII CATG 5 cut(s) 148, 287, 458, 687, 830
NlaIV GGNNCC 4 cut(s) 38, 39, 111, 692
PaeR7I CTCGAG 1 cut(s) 324
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 4 cut(s) 100, 565, 899, 935
PkrI GCNGC 3 cut(s) 30, 528, 919
PleI GAGTC 2 cut(s) 634, 878
PpsI GAGTC 2 cut(s) 634, 878
PpuMI RGGWCCY 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 229, 600
PspGI CCWGG 2 cut(s) 229, 600
PspN4I GGNNCC 4 cut(s) 38, 39, 111, 692
PspPI GGNCC 2 cut(s) 37, 95
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 324
PsrI GAACNNNNNNTAC 2 cut(s) 379, 411
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 1 cut(s) 814
RsaI GTAC 4 cut(s) 167, 267, 692, 974
RsaNI GTAC 4 cut(s) 166, 266, 691, 973
RseI CAYNNNNRTG 1 cut(s) 453
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 549, 648, 770, 1000
SatI GCNGC 3 cut(s) 29, 527, 918
Sau3AI GATC 5 cut(s) 72, 182, 590, 814, 943
Sau96I GGNCC 2 cut(s) 37, 95
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 2 cut(s) 635, 878
ScrFI CCNGG 3 cut(s) 77, 231, 602
SduI GDGCHC 2 cut(s) 163, 806
SfaNI GCATC 4 cut(s) 364, 430, 847, 856
Sfr274I CTCGAG 1 cut(s) 324
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 2 cut(s) 269, 324
SmoI CTYRAG 2 cut(s) 269, 324
SpeI ACTAGT 1 cut(s) 389
Sse9I AATT 6 cut(s) 221, 380, 553, 718, 744, 876
SseBI AGGCCT 1 cut(s) 609
SsiI CCGC 4 cut(s) 28, 31, 364, 664
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 75, 229, 600
StyI CCWWGG 2 cut(s) 144, 826
TaaI ACNGT 2 cut(s) 244, 788
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 325, 697, 942
TasI AATT 6 cut(s) 221, 380, 553, 718, 744, 876
TatI WGTACW 2 cut(s) 165, 265
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 4 cut(s) 100, 565, 899, 935
Tru1I TTAA 4 cut(s) 549, 648, 770, 1000
Tru9I TTAA 4 cut(s) 549, 648, 770, 1000
TscAI CASTG 3 cut(s) 247, 479, 974
TseI GCWGC 2 cut(s) 526, 917
TspDTI ATGAA 3 cut(s) 312, 690, 711
TspRI CASTG 3 cut(s) 247, 479, 974
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 2 cut(s) 744, 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.