Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012140

Physical Location & Seq

Genomic Coordinates Reverse (-)

27124651 .. 27127071

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTAAACATAGAGAGATTTTGGAGTGCGTTCATGAATGTTATGGGACATACTTGTAGGCATCATAGGCGGTGGGTAGCTGAGAAATTGGGAACTAGTGCTACAACCGAGGAACTTAGGTTCACCAAGAACATACTCTCCATTGATGCTAAACATTACCATGCTTGGTCTCATAGGCAGTGGGTTCTTCAGGCACTTGGAGGGTGGGAAGACGAACTTGACTATTGTCAGCAGCTCCTTGAAGAAGACATTTTTAACAATTCTGCTTGGAATCAGAGATATTTTGTCATTACAAGATCACCGTTCCTGGGAGGCCTGAAAGCTATGAGAGAGTCTGAAGTGTGTTATACTCTTAATGGCATTGTTGCCCGCCCAGAGAATGAAAGCTCATGGAGGTACCTTCGAGGGCTTTACAAAGATGACAATTCATCTTGGGTAAACAATCCTCAAATTTCTTCAGTATGCTTGGAGATTTTAAATGCCAAAACCAACTGTGTCTTTGCTTTGAGCACACTTTTGGATCTTATCTCCCATGGTTTCCAACCAAGCCAAGAGTTCACAGATGCTGTGGATGCTCTACGAATTTCAGACTCCGAACAAAGAGATTCTGATGTGGCAAAAGCTGCTTGTTTTGTCTTGGAATCTGTTGATCCATTTAGAGCTAACTATTGGCAGTGGTACAAGAACAAGCATTTCCAAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0004661 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005953 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008318 GO:0008360 GO:0009414 GO:0009415 GO:0009628 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010035 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0018344 GO:0019538 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0032991 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0065007 GO:0065008 GO:0071704 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

PPTA

Protein Analysis

235

Amino Acids

27.43

Weight (kDa)

5.9

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	37 - 66	1.4e-10	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	69 - 99	7.8e-08	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59380
fragaria_vesca	FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680 FvH4_4g10680
malus_domestica	MD04G1007300.v1.1
prunus_persica	Prupe.1G191500_v2.0.a1
pyrus_communis	pycom04g03430
rosa_chinensis	RchiOBHm_Chr4g0407031
rosa_laevigata	RLG00000008742
rosa_multiflora	Rmu_sc0000600.1_g000009
rosa_roxburghii	Rroxscaffold_5G00351730
rosa_rugosa	Rorug04G0077000
rosa_samantha	Rh4AG142200 Rh4BG139400 Rh4CG148800 Rh4DG136400
rosa_wichuraiana	Rw4G011590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	2 cut(s)	70, 370
AclWI	GGATC	2 cut(s)	528, 644
AcsI	RAATTY	2 cut(s)	450, 582
AcuI	CTGAAG	3 cut(s)	173, 357, 441
AfaI	GTAC	2 cut(s)	398, 680
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	306
AloI	GAACNNNNNNTCC	4 cut(s)	104, 122, 136, 154
AluBI	AGCT	6 cut(s)	80, 235, 323, 387, 623, 662
AluI	AGCT	6 cut(s)	80, 235, 323, 387, 623, 662
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	528, 644
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	232, 623
ApoI	RAATTY	2 cut(s)	450, 582
Asp718I	GGTACC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	115, 291
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	2 cut(s)	216, 252
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	244, 610
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	233, 624
BlsI	GCNGC	2 cut(s)	234, 625
Bme1390I	CCNGG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	4 cut(s)	70, 136, 553, 562
BoxI	GACNNNNGTC	1 cut(s)	225
BpiI	GAAGAC	2 cut(s)	216, 252
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	108, 307, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	108, 307, 532
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	244, 610
BshFI	GGCC	1 cut(s)	315
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	296, 520, 649
Bsp19I	CCATGG	1 cut(s)	532
BspACI	CCGC	2 cut(s)	70, 370
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	528, 644
BspT107I	GGYRCC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	174
BssECI	CCNNGG	3 cut(s)	108, 307, 532
BssMI	GATC	3 cut(s)	296, 520, 649
BssT1I	CCWWGG	1 cut(s)	532
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	303, 494
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	81, 116
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	3 cut(s)	299, 523, 652
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	296, 520, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 572, 623
BstNI	CCWGG	1 cut(s)	308
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	244, 610
BstV2I	GAAGAC	2 cut(s)	216, 252
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	577
BtsI	GCAGTG	2 cut(s)	185, 680
BtsIMutI	CAGTG	2 cut(s)	185, 680
Cac8I	GCNNGC	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	397, 679
CviAII	CATG	4 cut(s)	34, 161, 390, 533
CviJI	RGCY	9 cut(s)	80, 235, 315, 323, 387, 409, 549, 623, 662
CviKI_1	RGCY	9 cut(s)	80, 235, 315, 323, 387, 409, 549, 623, 662
CviQI	GTAC	2 cut(s)	397, 679
DdeI	CTNAG	2 cut(s)	81, 116
DpnI	GATC	3 cut(s)	298, 522, 651
DpnII	GATC	3 cut(s)	296, 520, 649
DraI	TTTAAA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	532
Eco147I	AGGCCT	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	174
Eco57I	CTGAAG	3 cut(s)	173, 357, 441
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	532
FaeI	CATG	4 cut(s)	37, 164, 393, 536
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	33, 160, 389, 532
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	233, 624
FokI	GGATG	1 cut(s)	584
Fsp4HI	GCNGC	2 cut(s)	233, 624
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	233, 624
HaeIII	GGCC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	37, 164, 393, 536
HinfI	GANTC	5 cut(s)	271, 332, 590, 605, 641
HphI	GGTGA	2 cut(s)	115, 291
Hpy166II	GTNNAC	3 cut(s)	123, 439, 558
Hpy188I	TCNGA	5 cut(s)	276, 337, 589, 595, 610
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	3 cut(s)	123, 439, 558
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	303, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 572, 623
HpyF3I	CTNAG	2 cut(s)	81, 116
Hsp92II	CATG	4 cut(s)	37, 164, 393, 536
KpnI	GGTACC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	296, 520, 649
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	5 cut(s)	176, 293, 320, 329, 387
Lsp1109I	GCAGC	2 cut(s)	244, 610
LweI	GCATC	4 cut(s)	70, 136, 553, 562
MaeI	CTAG	1 cut(s)	96
MalI	GATC	3 cut(s)	298, 522, 651
MboI	GATC	3 cut(s)	296, 520, 649
MboII	GAAGA	5 cut(s)	179, 221, 254, 257, 447
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	512
MluCI	AATT	5 cut(s)	86, 259, 424, 450, 582
MlyI	GAGTC	2 cut(s)	341, 584
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	103, 194, 305, 387, 398, 456
MseI	TTAA	5 cut(s)	5, 255, 354, 476, 706
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	67, 572, 623
NcoI	CCATGG	1 cut(s)	532
NdeII	GATC	3 cut(s)	296, 520, 649
NlaIII	CATG	4 cut(s)	37, 164, 393, 536
NlaIV	GGNNCC	1 cut(s)	398
PagI	TCATGA	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	271, 605, 641
PkrI	GCNGC	2 cut(s)	234, 625
PleI	GAGTC	2 cut(s)	340, 584
PpsI	GAGTC	2 cut(s)	340, 584
PshAI	GACNNNNGTC	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	398
PsrI	GAACNNNNNNTAC	2 cut(s)	85, 117
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	2 cut(s)	398, 680
RsaNI	GTAC	2 cut(s)	397, 679
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	5, 255, 354, 476, 706
SatI	GCNGC	2 cut(s)	233, 624
Sau3AI	GATC	3 cut(s)	296, 520, 649
SchI	GAGTC	2 cut(s)	341, 584
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	512
SetI	ASST	9 cut(s)	82, 122, 237, 325, 389, 398, 402, 625, 664
SfaNI	GCATC	4 cut(s)	70, 136, 553, 562
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	5 cut(s)	86, 259, 424, 450, 582
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	70, 370
SspMI	CTAG	1 cut(s)	96
StuI	AGGCCT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	532
TaaI	ACNGT	2 cut(s)	303, 494
TaqI	TCGA	1 cut(s)	403
TasI	AATT	5 cut(s)	86, 259, 424, 450, 582
TfiI	GAWTC	3 cut(s)	271, 605, 641
Tru1I	TTAA	5 cut(s)	5, 255, 354, 476, 706
Tru9I	TTAA	5 cut(s)	5, 255, 354, 476, 706
TscAI	CASTG	2 cut(s)	185, 680
TseI	GCWGC	2 cut(s)	232, 623
TspDTI	ATGAA	4 cut(s)	22, 50, 396, 417
TspRI	CASTG	2 cut(s)	185, 680
XapI	RAATTY	2 cut(s)	450, 582
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.