Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010438

Physical Location & Seq

Genomic Coordinates Forward (+)

21948851 .. 21959410

Gene Structure 10560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3726 bp

ATGGGTCGCAGCAGTTCGAAGAAAAAGAAGAAACGAGGAGGTAGCGGAAGAAGGGGTCAGCTGAAAGACCATGGATCTAATGCTGATGAAGATAATGAACTTCTATCTGAGGAGATCACTGCTCTCTCTGCAATATTTCAAGAGGACTGCAAAGTTGTTTCTGATTCGCGTTCGCCTCCGCAAATAGCAATCAAGCTCAGGCCGTACTCAAAGGACATGGGATATGAAGACACCGACATATCTGCTATGCTTATAGTTAGGTGCTTACCAGGATATCCTTACAAGTGCCCCAAGCTTCAGATTACTCCAGAACAAGGGTTGACAACAGCTGATGCTGAGAAGCTTTTATCTCTTCTCGAGGACCAGGCAAATTCCAATGCTCGTGAAGGTCGGGTTATGATATTCAACCTGGTGGAGGCTGCTCAAGAGTTTTTATCAGAAATCATTCCGGAAAGTCATGATGAGGAATCTGTTCCATGCTTGACTGCACATCGAAGCACTCAGTTCATTGAGCAACCTATGCTTTCAAATATAGCAAAATCCTGTTCTGGTGGACCTTTTGTGTATGGTTTTATAGACCTATTTAGTGGCTTGGAAGATGCAAGAAATTGGAGTCTGACTCCAGATGAAAATAGGGGAATCGTATCTTCAGTACAATCTCACCCACTAGACACTTCAAGAATTTTGCATCAGAAGCCAGACAAGAATCTGAAGCGATTTGAAGACCATGCTAAAGAAGAAGTTGCACTGCCTGCTCCCATTGCCAAACTGAATACTGTTCAAGAGGAGAATGTTGATGATACAAGCATCTCTTCTTTTGACTCAAGTAAATCTACTGACGATGTGGAATCTGGATTATTCCAAAATGAGAAGAAGGAATCAAATCTTCAAGATGATACAGCTGAAGATGACAGCACTAACTCCGAAAGTGAGTCGCTGGGGTCATGGTCTTCTGATTCCTTAGCTCAAGATCAAGTGCCTCAGATTAGCAAGAAAGATCTGTTGATGGTCCATTTACTTCGAGTAGCTTGCACTTCCCGAGGACCTTTGGCTGATGCATTACCTCAGATAACTGATGAACTGCATGAGCTTGGTATATTGTCTGAAGAAGTGTTGGATTTAGCTTCCAAATCATCTCCAGACTTTAATAGAACCTTTGAACATGCATTCAATCAAAACATGGCCTCAACCAGTGTTCCTCAGTTTTGGGAGCCACCTTCTGATTCTTGCGAGCCAAATGCATCACTCCCAAGCTCGCGATATCTCAATGATTTTGAAGAGTTGAAACCCCTTGGCCAAGGTGGTTTCGGCCACGTTGTGTTGTGCAAAAATAAACTGGATGGAAGACAATATGCAGTGAAGAAAATTCGACTGAAGGACAAAGAGATACCTGTCAACAGTCGGATAGTTCGAGAAGTAGCAACACTTTCCCGTTTGCAGCATCAGCATGTTGTACGTTACTATCAGGCCTGGTTCGAAACAGGAGTTGTTGATCCCTTTGCTGGCGCAAATTGGGGATCAAAAACTGCAGGGAGTTCAATGTTCAGCTACTCAGGTGCAGTGTCAACTGAAATTCCTGAGCAGGACAATAATCTTGAGTCGACTTATCTATATATTCAAATGGAATATTGTCCCAGGACTCTCCGCCAGGTTTTTGAATCATATAACCACTTCGACAAAGACTTTGCATGGCATTTAATTCGCCAAATTGTGGAAGGCTTAGCTCATATCCATGGACAAGGAATAATTCATCGGGATTTTACACCTAACAATATTTTCTTTGACGCTCGGAATGATATTAAAATTGGGGATTTTGGTCTTGCAAAGTTCTTGAAGCTGGAACAGTTGGATCAAGATGGGGGTTTCTCTACGGATGTGGCTGGAAGCGGAGTCGATAGTACTGGTCAAGCTGGTACTTACTTTTACACAGCACCTGAAATTGAGCAAGATTGGCCTAAGATTGATGAAAAGGCCGACATGTATAGCTTAGGGGTTGTGTTCTTTGAACTTTGGCATCCTTTTGGAACCGCCATGGAGAGACACGTTATTTTAACTAACCTGAAGCTGAAAGGGGAGCTACCTCTCAAATGGGTAAATGAATTTCCCGAACAGGCGTCTCTACTGCGGCGTTTGATGTCTCCAAGTCCATCTGATCGTCCCTCTGCCACAGAACTTCTTAAGCATGCATTTCCTCCCAGAATGGAATCTGAGTTACTGGACAATATTCTAAGAATAATGCAAACTTCTGAAGATTCAAGTGTTTATGATAGAGTAGTAAGTGTGATATTTGATGAAGAAGTATTAGAGATGAAAAGCCATCAGTCTAGTAGATCGAGACTCTGTGCAGATGATAGTTATATTCAATACACAGAGATAAATACAGAGCTTCGTGATTATGTTGTTGAAATAACAAAAGAAGTCTTTAGGCAGCATTGTGCGAAGCATCTAGAGGTCATACCAATGCGCTTACTTAGTGATTGCCCCCAGTTTAGCAGGAAAACTGTAAAGCTTTTGACCAATGGAGGAGATATGCTTGAACTATGCTATGAGCTACGACTGCCTTTTGTGCATTGGATAAGCGTAAATCAGAAATCCTCATTCAAGCGATATGAAATATCTCATGTCTACAGGAGAGCAATTGGCCATTCTCCACCAAATCCGTGTCTTCAGGCGGACTTTGACATTGTTGGAGGCACACTATCCCTGACAGAGGCAGAAGTTCTCAAGGTGATAGTAGACATCACAACCCACATCTTTCATCGCGGATCTTGTGACATTCATTTGAATCATGGAGATTTGCTGGATGCGATTTGGTCCTGGGCAGGAATTAAGGCAGAGCATAGACGAAAGGTTGCAGAGCTTCTTTCCATGATGGGATCCTTGCGTCCTCAGTCATCTGAGCGGAAGCTAAAATGGGTTTTCATAAGGCGTCAACTTCTTCAGGAGTTGAAGTTACCTGAAGCTGTTGTCAATAGACTGCAGACTGTTGCTTCAAGGTTTTGTGGAGATGCAGATCAAGCACTTCCTCGTTTAAGAGGGGCTCTGCGTGCTGATAGACCTACCCGCAAAGCACTCGATGAGTTGTCAAACCTCTTAACCTACCTGAGAGTCTGGAGGATAGAAGAGCATGTTCATATTGATGTTCTGATGCCACCAACTGAAAGTTATCACCGGAATTTGTTTTTTCAGGTTTTCTTAACCAAAGAAAATAGCTCTGGGACATCTAATGATGGCGTTTTACTTGCTGTTGGTGGTCGTTATGATTGGTTGGTGCAGGAAGTGTGTGATCGTGAACATAAAATGAACCTCCCTGGTGCTGTTGGAGTTAGTCTTGCACTGGAGACAATATTTCAGCATCTTCCTATGGATCTAAGGCCTATTAGAAATGAAGTCAGCACCAGTGTACTTGTTTGTTCAAGAGGAGGTGGTGGTTTACTGGTCCAGCGCATGGAACTAGTTGCGGAACTATGGGAAAAAAGTATAAAGGCTGAGTTTGTTCCAACACCTGATCCAAGTCTTACTGAGCAGTACGAATATGCAAATGAACATGAAATCAAATGTCTAGTGATCATCACAGAGTCTGGAGTAGCTCAAAATCAAATAGAGTTTGTAAAGGTTCGTCACCTTGAACTGAAGAAGGAGAAAGTGGTAGGAAGAGAAGAACTTGTCAAATTTCTGCTGGATGCAATGGCTGTTCAATTTAGAAACCCCTCTGTTTGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0009267 GO:0009268 GO:0009605 GO:0009628 GO:0009636 GO:0009719 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010243 GO:0010447 GO:0014070 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034198 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042594 GO:0046677 GO:0050896 GO:0051716 GO:0060992 GO:0070301 GO:0070887 GO:0071214 GO:0071236 GO:0071310 GO:0071407 GO:0071417 GO:0071467 GO:0071468 GO:0071495 GO:0071496 GO:0072755 GO:0097237 GO:0104004 GO:1901561 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1990451 GO:1990928

KEGG Pathways

Metabolic & Signaling

ko04138 ko04140 ko04141 ko05160 ko05162 ko05164 ko05168 ko05169 map04138 map04140 map04141 map05160 map05162 map05164 map05168 map05169

Pfam Domains

Protein Families

HGTP_anticodon2 Pkinase RWD tRNA-synt_His

Protein Analysis

1241

Amino Acids

140.32

Weight (kDa)

5.42

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	33 - 145	2.2e-20	RWD domain
Pkinase	PF00069	425 - 730	5.7e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	535 - 727	2e-15	Protein tyrosine and serine/threonine kinase
tRNA-synt_His	PF13393	888 - 1116	1.4e-10	Histidyl-tRNA synthetase
HGTP_anticodon2	PF12745	1134 - 1232	1.9e-08	Anticodon binding domain of tRNAs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59410 AT3G59410 AT3G59410 AT3G59410 AT3G59410
fragaria_vesca	FvH4_4g10800 FvH4_4g10800
malus_domestica	MD04G1040400.v1.1
prunus_persica	Prupe.1G194100_v2.0.a1 Prupe.1G194100_v2.0.a1
pyrus_communis	pycom04g03520
rosa_chinensis	RchiOBHm_Chr4g0406781
rosa_laevigata	RLG00000008759
rosa_multiflora	Rmu_sc0006408.1_g000006
rosa_roxburghii	Rroxscaffold_5G00351540
rosa_rugosa	Rorug04G0072900
rosa_samantha	Rh4AG140400 Rh4BG137400 Rh4CG147300 Rh4DG134400
rosa_wichuraiana	Rw4G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1711, 3448
AccBSI	CCGCTC	1 cut(s)	2902
AccI	GTMKAC	3 cut(s)	1601, 2625, 2736
AccII	CGCG	3 cut(s)	169, 1258, 2763
AccIII	TCCGGA	1 cut(s)	448
AclWI	GGATC	9 cut(s)	82, 1487, 1525, 1857, 2773, 2871, 2884, 3375, 3503
AcoI	YGGCCR	3 cut(s)	1294, 1309, 2641
AcsI	RAATTY	7 cut(s)	370, 681, 1365, 1572, 2099, 3175, 3671
AcyI	GRCGYC	2 cut(s)	2114, 2929
AdeI	CACNNNGTG	1 cut(s)	1318
AfaI	GTAC	7 cut(s)	206, 654, 1455, 1900, 1915, 3405, 3530
AfiI	CCNNNNNNNGG	7 cut(s)	314, 415, 1502, 1711, 2710, 3448, 3717
AflII	CTTAAG	1 cut(s)	2177
AflIII	ACRYGT	2 cut(s)	1977, 2041
AhlI	ACTAGT	1 cut(s)	3454
AjnI	CCWGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
Alw26I	GTCTC	5 cut(s)	2032, 2121, 2142, 2329, 3335
AlwI	GGATC	9 cut(s)	82, 1487, 1525, 1857, 2773, 2871, 2884, 3375, 3503
AlwNI	CAGNNNCTG	2 cut(s)	1934, 3581
Ama87I	CYCGRG	2 cut(s)	356, 1038
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	9 cut(s)	200, 1182, 1294, 1309, 1467, 1952, 1971, 2641, 3374
ApeKI	GCWGC	4 cut(s)	9, 419, 1438, 2428
ApoI	RAATTY	7 cut(s)	370, 681, 1365, 1572, 2099, 3175, 3671
ArsI	GACNNNNNNTTYG	2 cut(s)	1667, 1699
Asp700I	GAANNNNTTC	2 cut(s)	444, 471
AspLEI	GCGC	3 cut(s)	1508, 2466, 3447
AspS9I	GGNCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
AsuHPI	GGTGA	4 cut(s)	653, 2740, 3161, 3614
AsuII	TTCGAA	2 cut(s)	17, 1476
AvaI	CYCGRG	2 cut(s)	356, 1038
AvaII	GGWCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	2 cut(s)	1296, 2643
BamHI	GGATCC	1 cut(s)	2876
BanII	GRGCYC	1 cut(s)	3043
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	5 cut(s)	234, 729, 942, 1351, 2657
BbvI	GCAGC	4 cut(s)	21, 406, 1450, 2440
BccI	CCATC	7 cut(s)	1000, 1334, 1850, 2155, 2325, 2866, 3224
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
BclI	TGATCA	1 cut(s)	3567
BcoDI	GTCTC	5 cut(s)	2032, 2121, 2142, 2329, 3335
BcuI	ACTAGT	1 cut(s)	3454
BfaI	CTAG	5 cut(s)	668, 2325, 2447, 3455, 3563
BfmI	CTRYAG	3 cut(s)	1527, 2626, 2978
BfrI	CTTAAG	1 cut(s)	2177
BglII	AGATCT	1 cut(s)	997
BisI	GCNGC	5 cut(s)	10, 420, 1439, 2126, 2429
BlpI	GCTNAGC	1 cut(s)	1720
BlsI	GCNGC	5 cut(s)	11, 421, 1440, 2127, 2430
BmcAI	AGTACT	1 cut(s)	1900
Bme1390I	CCNGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
Bme18I	GGWCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
BmeT110I	CYCGRG	2 cut(s)	356, 1038
BmgT120I	GGNCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
BmiI	GGNNCC	3 cut(s)	1212, 2026, 2878
BmrFI	CCNGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
BmrI	ACTGGG	1 cut(s)	2479
BmuI	ACTGGG	1 cut(s)	2479
BpiI	GAAGAC	5 cut(s)	234, 729, 942, 1351, 2657
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	6 cut(s)	291, 606, 1122, 3133, 3359, 3603
Bpu10I	CCTNAGC	4 cut(s)	197, 961, 1578, 1987
Bpu1102I	GCTNAGC	1 cut(s)	1720
Bpu14I	TTCGAA	2 cut(s)	17, 1476
BpuEI	CTTGAG	5 cut(s)	408, 808, 951, 1616, 2708
BsaBI	GATNNNNATC	1 cut(s)	3012
BsaHI	GRCGYC	2 cut(s)	2114, 2929
BsaJI	CCNNGG	9 cut(s)	70, 1039, 1291, 1297, 1634, 1732, 2031, 2817, 3310
BsaWI	WCCGGW	2 cut(s)	448, 3171
BsaXI	ACNNNNNCTCC	2 cut(s)	2936, 2966
Bsc4I	CCNNNNNNNGG	7 cut(s)	314, 415, 1502, 1711, 2710, 3448, 3717
Bse1I	ACTGG	8 cut(s)	1191, 1341, 1906, 2220, 2485, 3342, 3399, 3441
Bse3DI	GCAATG	2 cut(s)	759, 3693
Bse8I	GATNNNNATC	1 cut(s)	3012
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
BseDI	CCNNGG	9 cut(s)	70, 1039, 1291, 1297, 1634, 1732, 2031, 2817, 3310
BseGI	GGATG	5 cut(s)	1345, 1879, 2014, 2809, 3688
BseJI	GATNNNNATC	1 cut(s)	3012
BseLI	CCNNNNNNNGG	7 cut(s)	314, 415, 1502, 1711, 2710, 3448, 3717
BseMI	GCAATG	2 cut(s)	759, 3693
BseNI	ACTGG	8 cut(s)	1191, 1341, 1906, 2220, 2485, 3342, 3399, 3441
BseRI	GAGGAG	5 cut(s)	51, 125, 800, 2538, 3435
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	21, 406, 1450, 2440
BseYI	CCCAGC	1 cut(s)	937
BsgI	GTGCAG	4 cut(s)	471, 1578, 2364, 3293
Bsh1236I	CGCG	3 cut(s)	169, 1258, 2763
BshFI	GGCC	9 cut(s)	202, 1184, 1296, 1311, 1469, 1954, 1973, 2643, 3376
BsiHKCI	CYCGRG	2 cut(s)	356, 1038
BsiSI	CCGG	2 cut(s)	449, 3172
BslFI	GGGAC	3 cut(s)	1617, 2142, 3232
BslI	CCNNNNNNNGG	7 cut(s)	314, 415, 1502, 1711, 2710, 3448, 3717
BsmAI	GTCTC	5 cut(s)	2032, 2121, 2142, 2329, 3335
BsmBI	CGTCTC	1 cut(s)	2121
BsmFI	GGGAC	3 cut(s)	1617, 2142, 3232
BsmI	GAATGC	1 cut(s)	1166
BsnI	GGCC	9 cut(s)	202, 1184, 1296, 1311, 1469, 1954, 1973, 2643, 3376
BsoBI	CYCGRG	2 cut(s)	356, 1038
Bsp119I	TTCGAA	2 cut(s)	17, 1476
Bsp1286I	GDGCHC	2 cut(s)	290, 3043
Bsp13I	TCCGGA	1 cut(s)	448
Bsp1720I	GCTNAGC	1 cut(s)	1720
Bsp19I	CCATGG	3 cut(s)	70, 1732, 2031
Bsp68I	TCGCGA	1 cut(s)	1258
BspANI	GGCC	9 cut(s)	202, 1184, 1296, 1311, 1469, 1954, 1973, 2643, 3376
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	3 cut(s)	169, 1258, 2763
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	1212, 2026, 2878
BspMAI	CTGCAG	2 cut(s)	1531, 2982
BspPI	GGATC	9 cut(s)	82, 1487, 1525, 1857, 2773, 2871, 2884, 3375, 3503
BspQI	GCTCTTC	1 cut(s)	3117
BspT104I	TTCGAA	2 cut(s)	17, 1476
BspTI	CTTAAG	1 cut(s)	2177
BsrBI	CCGCTC	1 cut(s)	2902
BsrDI	GCAATG	2 cut(s)	759, 3693
BsrI	ACTGG	8 cut(s)	1191, 1341, 1906, 2220, 2485, 3342, 3399, 3441
BssECI	CCNNGG	9 cut(s)	70, 1039, 1291, 1297, 1634, 1732, 2031, 2817, 3310
BssNI	GRCGYC	2 cut(s)	2114, 2929
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	5 cut(s)	70, 1291, 1297, 1732, 2031
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
Bst4CI	ACNGT	5 cut(s)	778, 1400, 1845, 2503, 2986
Bst6I	CTCTTC	5 cut(s)	357, 817, 1272, 3117, 3649
BstACI	GRCGYC	2 cut(s)	2114, 2929
BstAFI	CTTAAG	1 cut(s)	2177
BstAPI	GCANNNNNTGC	2 cut(s)	520, 752
BstBI	TTCGAA	2 cut(s)	17, 1476
BstC8I	GCNNGC	7 cut(s)	753, 1030, 1232, 1256, 1504, 2184, 3048
BstDSI	CCRYGG	3 cut(s)	70, 1732, 2031
BstENI	CCTNNNNNAGG	2 cut(s)	413, 2708
BstF5I	GGATG	5 cut(s)	1345, 1879, 2014, 2809, 3688
BstFNI	CGCG	3 cut(s)	169, 1258, 2763
BstHHI	GCGC	3 cut(s)	1508, 2466, 3447
BstMAI	GTCTC	5 cut(s)	2032, 2121, 2142, 2329, 3335
BstNI	CCWGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
BstNSI	RCATGY	5 cut(s)	1166, 1451, 1981, 2186, 3131
BstSCI	CCNGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
BstSFI	CTRYAG	3 cut(s)	1527, 2626, 2978
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	3 cut(s)	169, 1258, 2763
BstV1I	GCAGC	4 cut(s)	21, 406, 1450, 2440
BstV2I	GAAGAC	5 cut(s)	234, 729, 942, 1351, 2657
BstX2I	RGATCY	5 cut(s)	74, 997, 2765, 2876, 3367
BstYI	RGATCY	5 cut(s)	74, 997, 2765, 2876, 3367
BsuRI	GGCC	9 cut(s)	202, 1184, 1296, 1311, 1469, 1954, 1973, 2643, 3376
BtgI	CCRYGG	3 cut(s)	70, 1732, 2031
BtgZI	GCGATG	1 cut(s)	2744
BtsCI	GGATG	5 cut(s)	1345, 1879, 2014, 2809, 3688
BtsI	GCAGTG	4 cut(s)	117, 746, 1362, 1566
BtsIMutI	CAGTG	7 cut(s)	117, 746, 1198, 1362, 1566, 3335, 3406
BtuMI	TCGCGA	1 cut(s)	1258
Cac8I	GCNNGC	7 cut(s)	753, 1030, 1232, 1256, 1504, 2184, 3048
CaiI	CAGNNNCTG	2 cut(s)	1934, 3581
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	3 cut(s)	1508, 2466, 3447
Cfr13I	GGNCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
CseI	GACGC	4 cut(s)	1793, 2103, 2873, 2918
CsiI	ACCWGGT	1 cut(s)	408
Csp6I	GTAC	7 cut(s)	205, 653, 1454, 1899, 1914, 3404, 3529
CviQI	GTAC	7 cut(s)	205, 653, 1454, 1899, 1914, 3404, 3529
DraIII	CACNNNGTG	1 cut(s)	1318
EaeI	YGGCCR	3 cut(s)	1294, 1309, 2641
Eam1104I	CTCTTC	5 cut(s)	357, 817, 1272, 3117, 3649
EarI	CTCTTC	5 cut(s)	357, 817, 1272, 3117, 3649
EciI	GGCGGA	2 cut(s)	1634, 2687
Eco130I	CCWWGG	5 cut(s)	70, 1291, 1297, 1732, 2031
Eco147I	AGGCCT	2 cut(s)	1469, 3376
Eco24I	GRGCYC	1 cut(s)	3043
Eco32I	GATATC	2 cut(s)	275, 1262
Eco47I	GGWCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
Eco88I	CYCGRG	2 cut(s)	356, 1038
EcoNI	CCTNNNNNAGG	2 cut(s)	413, 2708
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoRII	CCWGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
EcoRV	GATATC	2 cut(s)	275, 1262
EcoT14I	CCWWGG	5 cut(s)	70, 1291, 1297, 1732, 2031
EcoT22I	ATGCAT	4 cut(s)	1060, 1168, 1243, 2188
EcoT38I	GRGCYC	1 cut(s)	3043
ErhI	CCWWGG	5 cut(s)	70, 1291, 1297, 1732, 2031
Esp3I	CGTCTC	1 cut(s)	2121
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	3 cut(s)	1617, 2142, 3232
FauI	CCCGC	1 cut(s)	3071
FbaI	TGATCA	1 cut(s)	3567
FblI	GTMKAC	3 cut(s)	1601, 2625, 2736
Fnu4HI	GCNGC	5 cut(s)	10, 420, 1439, 2126, 2429
FokI	GGATG	5 cut(s)	1352, 1886, 2001, 2816, 3695
FriOI	GRGCYC	1 cut(s)	3043
Fsp4HI	GCNGC	5 cut(s)	10, 420, 1439, 2126, 2429
FspBI	CTAG	5 cut(s)	668, 2325, 2447, 3455, 3563
GlaI	GCGC	3 cut(s)	1507, 2465, 3446
GluI	GCNGC	5 cut(s)	10, 420, 1439, 2126, 2429
GsaI	CCCAGC	1 cut(s)	941
GsuI	CTGGAG	6 cut(s)	291, 606, 1122, 3133, 3359, 3603
HaeIII	GGCC	9 cut(s)	202, 1184, 1296, 1311, 1469, 1954, 1973, 2643, 3376
HapII	CCGG	2 cut(s)	449, 3172
HgaI	GACGC	4 cut(s)	1793, 2103, 2873, 2918
HhaI	GCGC	3 cut(s)	1508, 2466, 3447
Hin1I	GRCGYC	2 cut(s)	2114, 2929
Hin6I	GCGC	3 cut(s)	1506, 2464, 3445
HinP1I	GCGC	3 cut(s)	1506, 2464, 3445
HincII	GTYRAC	5 cut(s)	321, 1396, 1566, 1602, 2933
HindII	GTYRAC	5 cut(s)	321, 1396, 1566, 1602, 2933
HindIII	AAGCTT	3 cut(s)	293, 341, 2507
HpaII	CCGG	2 cut(s)	449, 3172
HphI	GGTGA	4 cut(s)	653, 2740, 3161, 3614
HpyAV	CCTTC	7 cut(s)	45, 380, 868, 1227, 1369, 1709, 3631
HpyCH4III	ACNGT	5 cut(s)	778, 1400, 1845, 2503, 2986
HpyCH4IV	ACGT	3 cut(s)	1314, 1456, 2043
HpySE526I	ACGT	3 cut(s)	1314, 1456, 2043
Hsp92I	GRCGYC	2 cut(s)	2114, 2929
HspAI	GCGC	3 cut(s)	1506, 2464, 3445
Kpn2I	TCCGGA	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	3567
LguI	GCTCTTC	1 cut(s)	3117
LmnI	GCTCC	4 cut(s)	760, 1210, 2074, 3720
Lsp1109I	GCAGC	4 cut(s)	21, 406, 1450, 2440
MabI	ACCWGGT	1 cut(s)	408
MaeI	CTAG	5 cut(s)	668, 2325, 2447, 3455, 3563
MaeII	ACGT	3 cut(s)	1314, 1456, 2043
MaeIII	GTNAC	5 cut(s)	1457, 2211, 2771, 2952, 3620
MbiI	CCGCTC	1 cut(s)	2902
MfeI	CAATTG	1 cut(s)	2637
MflI	RGATCY	5 cut(s)	74, 997, 2765, 2876, 3367
MhlI	GDGCHC	2 cut(s)	290, 3043
MlsI	TGGCCA	2 cut(s)	1296, 2643
MluNI	TGGCCA	2 cut(s)	1296, 2643
MmeI	TCCRAC	6 cut(s)	1095, 1382, 1827, 2668, 3301, 3524
Mox20I	TGGCCA	2 cut(s)	1296, 2643
Mph1103I	ATGCAT	4 cut(s)	1060, 1168, 1243, 2188
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	444, 471
MscI	TGGCCA	2 cut(s)	1296, 2643
MseI	TTAA	9 cut(s)	1146, 1697, 1800, 2051, 2178, 2829, 3032, 3095, 3197
MslI	CAYNNNNRTG	4 cut(s)	1446, 1731, 2459, 3138
Msp20I	TGGCCA	2 cut(s)	1296, 2643
MspA1I	CMGCKG	3 cut(s)	61, 329, 902
MspCI	CTTAAG	1 cut(s)	2177
MspI	CCGG	2 cut(s)	449, 3172
MspR9I	CCNGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
MunI	CAATTG	1 cut(s)	2637
Mva1269I	GAATGC	1 cut(s)	1166
MvaI	CCWGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
MvnI	CGCG	3 cut(s)	169, 1258, 2763
NcoI	CCATGG	3 cut(s)	70, 1732, 2031
NlaIV	GGNNCC	3 cut(s)	1212, 2026, 2878
NmuCI	GTSAC	2 cut(s)	2771, 3620
NruI	TCGCGA	1 cut(s)	1258
NsiI	ATGCAT	4 cut(s)	1060, 1168, 1243, 2188
NspI	RCATGY	5 cut(s)	1166, 1451, 1981, 2186, 3131
NspV	TTCGAA	2 cut(s)	17, 1476
PaeI	GCATGC	1 cut(s)	2186
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	457
PceI	AGGCCT	2 cut(s)	1469, 3376
PciI	ACATGT	1 cut(s)	1977
PciSI	GCTCTTC	1 cut(s)	3117
PcsI	WCGNNNNNNNCGW	1 cut(s)	1408
PctI	GAATGC	1 cut(s)	1166
PdmI	GAANNNNTTC	2 cut(s)	444, 471
PflMI	CCANNNNNTGG	2 cut(s)	1711, 3448
PkrI	GCNGC	5 cut(s)	11, 421, 1440, 2127, 2430
PpuMI	RGGWCCY	1 cut(s)	1043
PscI	ACATGT	1 cut(s)	1977
Psp5II	RGGWCCY	1 cut(s)	1043
Psp6I	CCWGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
PspFI	CCCAGC	1 cut(s)	937
PspGI	CCWGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
PspN4I	GGNNCC	3 cut(s)	1212, 2026, 2878
PspPI	GGNCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
PspPPI	RGGWCCY	1 cut(s)	1043
PstI	CTGCAG	2 cut(s)	1531, 2982
PstNI	CAGNNNCTG	2 cut(s)	1934, 3581
PsuI	RGATCY	5 cut(s)	74, 997, 2765, 2876, 3367
PvuII	CAGCTG	3 cut(s)	61, 329, 902
RruI	TCGCGA	1 cut(s)	1258
RsaI	GTAC	7 cut(s)	206, 654, 1455, 1900, 1915, 3405, 3530
RsaNI	GTAC	7 cut(s)	205, 653, 1454, 1899, 1914, 3404, 3529
RseI	CAYNNNNRTG	4 cut(s)	1446, 1731, 2459, 3138
SalI	GTCGAC	1 cut(s)	1600
SapI	GCTCTTC	1 cut(s)	3117
SaqAI	TTAA	9 cut(s)	1146, 1697, 1800, 2051, 2178, 2829, 3032, 3095, 3197
SatI	GCNGC	5 cut(s)	10, 420, 1439, 2126, 2429
Sau96I	GGNCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
ScaI	AGTACT	1 cut(s)	1900
ScrFI	CCNGG	8 cut(s)	270, 365, 410, 1471, 1636, 1649, 2818, 3312
SduI	GDGCHC	2 cut(s)	290, 3043
SexAI	ACCWGGT	1 cut(s)	408
SfcI	CTRYAG	3 cut(s)	1527, 2626, 2978
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	2 cut(s)	17, 1476
SinI	GGWCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	4 cut(s)	1446, 1731, 2459, 3138
SmlI	CTYRAG	7 cut(s)	356, 423, 823, 966, 1595, 2177, 2723
SmoI	CTYRAG	7 cut(s)	356, 423, 823, 966, 1595, 2177, 2723
SpeI	ACTAGT	1 cut(s)	3454
SphI	GCATGC	1 cut(s)	2186
SseBI	AGGCCT	2 cut(s)	1469, 3376
SspI	AATATT	5 cut(s)	135, 1628, 1774, 2224, 3348
SspMI	CTAG	5 cut(s)	668, 2325, 2447, 3455, 3563
StuI	AGGCCT	2 cut(s)	1469, 3376
StyD4I	CCNGG	8 cut(s)	268, 363, 408, 1469, 1634, 1647, 2816, 3310
StyI	CCWWGG	5 cut(s)	70, 1291, 1297, 1732, 2031
TaaI	ACNGT	5 cut(s)	778, 1400, 1845, 2503, 2986
TaiI	ACGT	3 cut(s)	1317, 1459, 2046
TatI	WGTACW	3 cut(s)	652, 1898, 3403
TauI	GCSGC	1 cut(s)	2128
Tru1I	TTAA	9 cut(s)	1146, 1697, 1800, 2051, 2178, 2829, 3032, 3095, 3197
Tru9I	TTAA	9 cut(s)	1146, 1697, 1800, 2051, 2178, 2829, 3032, 3095, 3197
TscAI	CASTG	7 cut(s)	124, 753, 1198, 1362, 1566, 3342, 3406
TseFI	GTSAC	2 cut(s)	2771, 3620
TseI	GCWGC	4 cut(s)	9, 419, 1438, 2428
Tsp45I	GTSAC	2 cut(s)	2771, 3620
TspGWI	ACGGA	2 cut(s)	1886, 2649
TspRI	CASTG	7 cut(s)	124, 753, 1198, 1362, 1566, 3342, 3406
Van91I	CCANNNNNTGG	2 cut(s)	1711, 3448
Vha464I	CTTAAG	1 cut(s)	2177
VpaK11BI	GGWCC	6 cut(s)	361, 554, 1009, 1043, 2814, 3439
XagI	CCTNNNNNAGG	2 cut(s)	413, 2708
XapI	RAATTY	7 cut(s)	370, 681, 1365, 1572, 2099, 3175, 3671
XbaI	TCTAGA	1 cut(s)	2446
XceI	RCATGY	5 cut(s)	1166, 1451, 1981, 2186, 3131
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	3 cut(s)	1601, 2625, 2736
XmnI	GAANNNNTTC	2 cut(s)	444, 471
XspI	CTAG	5 cut(s)	668, 2325, 2447, 3455, 3563
ZrmI	AGTACT	1 cut(s)	1900
Zsp2I	ATGCAT	4 cut(s)	1060, 1168, 1243, 2188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.