Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Forward (+)

22148189 .. 22150583

Gene Structure 2395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCTTCCTCGAAGAAGGGTTCCGATCGGAATCAAATCAGGAAGTCGTTGAGGAAGTTAAAAAAGCAGATTGGGGAATTGGAGAAACTTGAATCTCCGGATCGGTTGAATAATGTGAAGCCTATCTTCATCAAGCGCAATATATACTTGAAGAAGAAACTCAAGAAGAAAGTTAAGGATCATGGCATATTCTGTTCTTGCTCCTTGGATCCTGGTTCTTCAACTCTTTGTGGCAGCGATTGCAATTGTGGGATTCTACTCTCAAGCTGTTCGTCTAGTTGCAAATGCAGTAGTGAATGCACCAACAAGCCGTTCCAACAACGACATATCAAGAAGATGAAGTTAGTTCAGACAGAGAAATGTGGATATGGGATTGTAGCAGATGAAGATATCAACTCAGGAGAGTTTATCATTGAATATGTGGGAGAAGTTATTGACGACAAGATTTGTGAAGAAAGGCTTTGGAAGCTGAATCATAAGGTCGAGACAAATTTCTATTTGTGTCAGATAAACTGGAACATGGTGATTGATGCTACTCACAAGGGTAATAAATCAAGATACATCAATCACAGCTGCAGTCCTAACACAGAGATGCAGAAATGGATAATTGATGGCGAGACAAGAATCGGCATTTTTGCTACCCGTTTCATAAACAAAGGCGAGCAGTTGACTTACGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGATTGCTACTGTGGTGCAGTGTGTTGCAGAAAAAAGCTAGGTGCAAAACCTTGCAAAACTAAGAACACAACCTTAGAAGAAGCTGTGAAGCCAGTGGCATGTAAAGTGACCTGGAAAACGCCCAAGGGAAAAACTCGAGGGAGACGCATTGCTGGACAAGCTTGGAACAATCATAGCCAGAGGAAAATATGTTGCCGGGACTGCATTGGTGCGGTGATCTGGTTAGCACGTCCCATGAACCAAAAGTGTTTTGGAATCATTACACAATATGATGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

329

Amino Acids

37.55

Weight (kDa)

9.28

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	122 - 228	4.6e-27	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	4 cut(s)	108, 186, 203, 216
AcsI	RAATTY	1 cut(s)	490
AgsI	TTSAA	5 cut(s)	92, 109, 151, 222, 416
AjiI	CACGTC	1 cut(s)	938
AjnI	CCWGG	2 cut(s)	211, 818
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	6 cut(s)	267, 469, 573, 745, 791, 869
AluI	AGCT	6 cut(s)	267, 469, 573, 745, 791, 869
Alw26I	GTCTC	3 cut(s)	479, 611, 844
AlwI	GGATC	4 cut(s)	108, 186, 203, 216
Ama87I	CYCGRG	1 cut(s)	843
Aor13HI	TCCGGA	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	234, 573
ApoI	RAATTY	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	905
AsuHPI	GGTGA	2 cut(s)	535, 934
AvaI	CYCGRG	1 cut(s)	843
BamHI	GGATCC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	246, 560
BccI	CCATC	1 cut(s)	605
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	2 cut(s)	213, 820
BcnI	CCSGG	1 cut(s)	905
BcoDI	GTCTC	3 cut(s)	479, 611, 844
BfaI	CTAG	2 cut(s)	276, 746
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	2 cut(s)	235, 574
BlsI	GCNGC	2 cut(s)	236, 575
Bme1390I	CCNGG	3 cut(s)	213, 820, 905
BmeT110I	CYCGRG	1 cut(s)	843
BmgBI	CACGTC	1 cut(s)	938
BmiI	GGNNCC	2 cut(s)	22, 210
BmrFI	CCNGG	3 cut(s)	213, 820, 905
BmsI	GCATC	2 cut(s)	520, 582
BpuEI	CTTGAG	2 cut(s)	146, 247
BpuMI	CCSGG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	204, 831
BsaWI	WCCGGW	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	518, 682, 800
Bse3DI	GCAATG	1 cut(s)	855
Bse8I	GATNNNNATC	1 cut(s)	30
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	213, 820
BseDI	CCNNGG	2 cut(s)	204, 831
BseJI	GATNNNNATC	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	3 cut(s)	518, 682, 800
BseXI	GCAGC	2 cut(s)	246, 560
BsgI	GTGCAG	2 cut(s)	720, 744
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	843
BsiSI	CCGG	2 cut(s)	98, 904
BslFI	GGGAC	2 cut(s)	920, 924
BsmAI	GTCTC	3 cut(s)	479, 611, 844
BsmBI	CGTCTC	1 cut(s)	844
BsmFI	GGGAC	2 cut(s)	920, 924
BsmI	GAATGC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	843
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
BspACI	CCGC	1 cut(s)	920
BspCNI	CTCAG	1 cut(s)	410
BspEI	TCCGGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	22, 210
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	4 cut(s)	108, 186, 203, 216
BsrDI	GCAATG	1 cut(s)	855
BsrI	ACTGG	3 cut(s)	518, 682, 800
BssECI	CCNNGG	2 cut(s)	204, 831
BssMI	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
BssT1I	CCWWGG	2 cut(s)	204, 831
Bst2UI	CCWGG	2 cut(s)	213, 820
Bst4CI	ACNGT	1 cut(s)	719
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	662
BstDEI	CTNAG	3 cut(s)	397, 768, 781
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	6 cut(s)	28, 103, 181, 211, 706, 927
BstMAI	GTCTC	3 cut(s)	479, 611, 844
BstMBI	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 466, 866, 909
BstNI	CCWGG	2 cut(s)	213, 820
BstNSI	RCATGY	1 cut(s)	810
BstSCI	CCNGG	3 cut(s)	211, 818, 903
BstSFI	CTRYAG	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	246, 560
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	938
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	732, 807
Cac8I	GCNNGC	1 cut(s)	662
CfoI	GCGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	861
CviAII	CATG	4 cut(s)	182, 520, 807, 943
DdeI	CTNAG	3 cut(s)	397, 768, 781
DpnI	GATC	6 cut(s)	27, 102, 180, 210, 705, 926
DpnII	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
Eco130I	CCWWGG	2 cut(s)	204, 831
Eco32I	GATATC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	843
EcoRII	CCWGG	2 cut(s)	211, 818
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	204, 831
ErhI	CCWWGG	2 cut(s)	204, 831
Esp3I	CGTCTC	1 cut(s)	844
FaeI	CATG	4 cut(s)	185, 523, 810, 946
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 444, 476
FaqI	GGGAC	2 cut(s)	920, 924
FatI	CATG	4 cut(s)	181, 519, 806, 942
Fnu4HI	GCNGC	2 cut(s)	235, 574
Fsp4HI	GCNGC	2 cut(s)	235, 574
FspBI	CTAG	2 cut(s)	276, 746
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	235, 574
HapII	CCGG	2 cut(s)	98, 904
HgaI	GACGC	1 cut(s)	861
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	185, 523, 810, 946
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	6 cut(s)	31, 92, 253, 472, 624, 963
HpaII	CCGG	2 cut(s)	98, 904
HphI	GGTGA	2 cut(s)	535, 934
Hpy166II	GTNNAC	1 cut(s)	669
Hpy188I	TCNGA	4 cut(s)	25, 30, 351, 507
Hpy188III	TCNNGA	8 cut(s)	40, 98, 163, 331, 399, 484, 555, 707
Hpy8I	GTNNAC	1 cut(s)	669
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	719
HpyCH4IV	ACGT	1 cut(s)	937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 466, 866, 909
HpyF3I	CTNAG	3 cut(s)	397, 768, 781
HpySE526I	ACGT	1 cut(s)	937
Hsp92II	CATG	4 cut(s)	185, 523, 810, 946
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	246, 560
LweI	GCATC	2 cut(s)	520, 582
MaeI	CTAG	2 cut(s)	276, 746
MaeII	ACGT	1 cut(s)	937
MaeIII	GTNAC	1 cut(s)	814
MalI	GATC	6 cut(s)	27, 102, 180, 210, 705, 926
MboI	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
MfeI	CAATTG	1 cut(s)	244
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	4 cut(s)	77, 244, 490, 606
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	19, 45, 839, 882
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	3 cut(s)	59, 174, 988
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	573
MspI	CCGG	2 cut(s)	98, 904
MspR9I	CCNGG	3 cut(s)	213, 820, 905
MunI	CAATTG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	213, 820
MwoI	GCNNNNNNNGC	4 cut(s)	240, 466, 866, 909
NciI	CCSGG	1 cut(s)	905
NdeII	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
NlaIII	CATG	4 cut(s)	185, 523, 810, 946
NlaIV	GGNNCC	2 cut(s)	22, 210
NmuCI	GTSAC	1 cut(s)	814
NspI	RCATGY	1 cut(s)	810
PaeR7I	CTCGAG	1 cut(s)	843
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	6 cut(s)	31, 92, 253, 472, 624, 963
PkrI	GCNGC	2 cut(s)	236, 575
Ple19I	CGATCG	1 cut(s)	28
Psp6I	CCWGG	2 cut(s)	211, 818
PspGI	CCWGG	2 cut(s)	211, 818
PspN4I	GGNNCC	2 cut(s)	22, 210
PspXI	VCTCGAGB	1 cut(s)	843
PstI	CTGCAG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	573
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	59, 174, 988
SatI	GCNGC	2 cut(s)	235, 574
Sau3AI	GATC	6 cut(s)	25, 100, 178, 208, 703, 924
ScrFI	CCNGG	3 cut(s)	213, 820, 905
SfaNI	GCATC	2 cut(s)	520, 582
SfcI	CTRYAG	1 cut(s)	574
Sfr274I	CTCGAG	1 cut(s)	843
SlaI	CTCGAG	1 cut(s)	843
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	3 cut(s)	161, 262, 843
SmoI	CTYRAG	3 cut(s)	161, 262, 843
Sse9I	AATT	4 cut(s)	77, 244, 490, 606
SsiI	CCGC	1 cut(s)	920
SspMI	CTAG	2 cut(s)	276, 746
StyD4I	CCNGG	3 cut(s)	211, 818, 903
StyI	CCWWGG	2 cut(s)	204, 831
TaaI	ACNGT	1 cut(s)	719
TaiI	ACGT	1 cut(s)	940
TaqI	TCGA	3 cut(s)	11, 483, 844
TasI	AATT	4 cut(s)	77, 244, 490, 606
TfiI	GAWTC	6 cut(s)	31, 92, 253, 472, 624, 963
Tru1I	TTAA	3 cut(s)	59, 174, 988
Tru9I	TTAA	3 cut(s)	59, 174, 988
TscAI	CASTG	2 cut(s)	732, 807
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	2 cut(s)	234, 573
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	5 cut(s)	118, 353, 399, 637, 959
TspRI	CASTG	2 cut(s)	732, 807
XapI	RAATTY	1 cut(s)	490
XceI	RCATGY	1 cut(s)	810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	956
XhoI	CTCGAG	1 cut(s)	843
XspI	CTAG	2 cut(s)	276, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.