Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

71743 .. 78785

Gene Structure 7043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGCCTGCTATGAAGAAGCATACTGAGCGCAGTCACATTGGGAATGTATTCAACAAGTTGCTGAAGCAGATTGGAAGTCCTGTGGATTTTGAACTTCCAGATTGGTTCAGTAAATGGAAACCCATGAACTACACTTTTATAAAGCGCAATATATATCTCACTAAGAGGATTAAAAGACGACTTGAAGATGATGGAATATTCTGCTCATGCTGCCCATCATCACCAGGGTCTCCTAGTGTTTGTGGTAGAGATTGCCATTGTGGGATGCTACTGTCTAGCTGCTCCTCAGGCTGTAAATGTGGTAGTTCATGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAACTGGTGAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATACGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGACGCCACGTACAAGGGGAACAAATCAAGATATATAAACCATAGCTGTTGTCCCAATACTGAGATGCAAAAATGGATAATCGATGGTGAAACAAGAATAGGCATATTTGCAACTTGCGACATAAAAAAGGGCGATCACCTCACCTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGCGGTGCTGTTGGTTGTCGTGAAAAACTTGGTGTACGACCTACCAAACCAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCATGCCAGGTGGCTGTGTCCTCTCCCAAAGTGAAAACAATGCTCTCTGCAAAAGATGTTTATCTGGATGGTGGTTTTCCTATAGGAAGTTCTCAACCTATCCGTAAGGACCATAACCAAGGTGCTACTGCTTGTAATTGCATTGATGAAGTGATTCAAATACGTCGTCCCATAAATCAGAGGTCATTCGGGGTTATCAAACGGTTTGATAATCATTCCAAAAAACACGCGATCATGTTTGAAGATGGTGGCATTGAAATCCTGGACATGTCGAAAGAAGAATGGGAATTTGTAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

371

Amino Acids

41.94

Weight (kDa)

8.67

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	126 - 232	1.1e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccII	CGCG	1 cut(s)	1043
AciI	CCGC	2 cut(s)	392, 732
AcsI	RAATTY	2 cut(s)	416, 1100
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	2 cut(s)	551, 765
AflIII	ACRYGT	2 cut(s)	458, 1080
AgsI	TTSAA	8 cut(s)	52, 92, 185, 704, 805, 971, 1055, 1070
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	3 cut(s)	223, 819, 1074
AluBI	AGCT	2 cut(s)	279, 585
AluI	AGCT	2 cut(s)	279, 585
Alw26I	GTCTC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	210, 279, 797
ApoI	RAATTY	2 cut(s)	416, 1100
ArsI	GACNNNNNNTTYG	2 cut(s)	964, 996
Asp700I	GAANNNNTTC	2 cut(s)	47, 966
AspLEI	GCGC	2 cut(s)	30, 147
AspS9I	GGNCC	1 cut(s)	922
AsuHPI	GGTGA	5 cut(s)	213, 370, 638, 668, 673
AvaII	GGWCC	1 cut(s)	922
AxyI	CCTNAGG	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	197, 266, 784
BccI	CCATC	5 cut(s)	185, 223, 617, 875, 1052
BciT130I	CCWGG	3 cut(s)	225, 821, 1076
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	3 cut(s)	234, 276, 809
BfmI	CTRYAG	1 cut(s)	894
BisI	GCNGC	3 cut(s)	211, 280, 798
BlsI	GCNGC	3 cut(s)	212, 281, 799
Bme1390I	CCNGG	3 cut(s)	225, 821, 1076
Bme18I	GGWCC	1 cut(s)	922
BmgT120I	GGNCC	1 cut(s)	922
BmrFI	CCNGG	3 cut(s)	225, 821, 1076
BmsI	GCATC	2 cut(s)	255, 594
BpiI	GAAGAC	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	224, 490, 931
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	360
Bse21I	CCTNAGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	727
Bse8I	GATNNNNATC	1 cut(s)	873
BseBI	CCWGG	3 cut(s)	225, 821, 1076
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	224, 490, 931
BseGI	GGATG	3 cut(s)	270, 400, 886
BseJI	GATNNNNATC	1 cut(s)	873
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	4 cut(s)	15, 300, 357, 591
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	197, 266, 784
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	1043
BshFI	GGCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	576, 966
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	576, 966
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	673, 715, 1044
BspACI	CCGC	2 cut(s)	392, 732
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	4 cut(s)	16, 299, 358, 592
BspDI	ATCGAT	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	224, 490, 931
BssMI	GATC	3 cut(s)	673, 715, 1044
BssNI	GRCGYC	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	3 cut(s)	225, 821, 1076
Bst4CI	ACNGT	3 cut(s)	273, 491, 1017
BstACI	GRCGYC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	6, 817
BstDEI	CTNAG	5 cut(s)	24, 162, 286, 366, 600
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	270, 400, 886
BstFNI	CGCG	1 cut(s)	1043
BstHHI	GCGC	2 cut(s)	30, 147
BstKTI	GATC	3 cut(s)	676, 718, 1047
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	673, 715, 1044
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
BstNI	CCWGG	3 cut(s)	225, 821, 1076
BstNSI	RCATGY	3 cut(s)	462, 819, 1084
BstSCI	CCNGG	3 cut(s)	223, 819, 1074
BstSFI	CTRYAG	1 cut(s)	894
BstUI	CGCG	1 cut(s)	1043
BstV1I	GCAGC	3 cut(s)	197, 266, 784
BstV2I	GAAGAC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	3 cut(s)	270, 400, 886
Cac8I	GCNNGC	2 cut(s)	6, 817
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	2 cut(s)	30, 147
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	922
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	550, 764
CviAII	CATG	7 cut(s)	124, 207, 309, 459, 816, 1048, 1081
CviJI	RGCY	6 cut(s)	279, 291, 337, 472, 585, 827
CviKI_1	RGCY	6 cut(s)	279, 291, 337, 472, 585, 827
CviQI	GTAC	2 cut(s)	550, 764
DdeI	CTNAG	5 cut(s)	24, 162, 286, 366, 600
DpnI	GATC	3 cut(s)	675, 717, 1046
DpnII	GATC	3 cut(s)	673, 715, 1044
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	931
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	922
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	223, 819, 1074
EcoT14I	CCWWGG	1 cut(s)	931
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	7 cut(s)	127, 210, 312, 462, 819, 1051, 1084
FaqI	GGGAC	2 cut(s)	576, 966
FatI	CATG	7 cut(s)	123, 206, 308, 458, 815, 1047, 1080
Fnu4HI	GCNGC	3 cut(s)	211, 280, 798
FokI	GGATG	3 cut(s)	277, 407, 893
Fsp4HI	GCNGC	3 cut(s)	211, 280, 798
FspBI	CTAG	3 cut(s)	234, 276, 809
GlaI	GCGC	2 cut(s)	29, 146
GluI	GCNGC	3 cut(s)	211, 280, 798
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	2 cut(s)	30, 147
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	7 cut(s)	127, 210, 312, 462, 819, 1051, 1084
Hin6I	GCGC	2 cut(s)	28, 145
HinP1I	GCGC	2 cut(s)	28, 145
HinfI	GANTC	1 cut(s)	967
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	5 cut(s)	213, 370, 638, 668, 673
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	2 cut(s)	315, 993
Hpy188III	TCNNGA	7 cut(s)	98, 381, 527, 567, 719, 749, 878
Hpy8I	GTNNAC	1 cut(s)	764
Hpy99I	CGWCG	1 cut(s)	981
HpyCH4III	ACNGT	3 cut(s)	273, 491, 1017
HpyCH4IV	ACGT	3 cut(s)	432, 548, 976
HpyCH4V	TGCA	5 cut(s)	607, 650, 713, 863, 954
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
HpyF3I	CTNAG	5 cut(s)	24, 162, 286, 366, 600
HpySE526I	ACGT	3 cut(s)	432, 548, 976
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	7 cut(s)	127, 210, 312, 462, 819, 1051, 1084
HspAI	GCGC	2 cut(s)	28, 145
Kzo9I	GATC	3 cut(s)	673, 715, 1044
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	197, 266, 784
LweI	GCATC	2 cut(s)	255, 594
MaeI	CTAG	3 cut(s)	234, 276, 809
MaeII	ACGT	3 cut(s)	432, 548, 976
MaeIII	GTNAC	2 cut(s)	32, 1105
MalI	GATC	3 cut(s)	675, 717, 1046
MboI	GATC	3 cut(s)	673, 715, 1044
MboII	GAAGA	8 cut(s)	25, 197, 355, 358, 373, 410, 1067, 1103
MluCI	AATT	5 cut(s)	384, 416, 704, 949, 1100
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	6 cut(s)	159, 295, 457, 689, 844, 987
MroXI	GAANNNNTTC	2 cut(s)	47, 966
MseI	TTAA	2 cut(s)	171, 405
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	3 cut(s)	225, 821, 1076
MvaI	CCWGG	3 cut(s)	225, 821, 1076
MvnI	CGCG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
NdeII	GATC	3 cut(s)	673, 715, 1044
NlaIII	CATG	7 cut(s)	127, 210, 312, 462, 819, 1051, 1084
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	3 cut(s)	462, 819, 1084
PaeI	GCATGC	1 cut(s)	819
PciI	ACATGT	2 cut(s)	458, 1080
PdmI	GAANNNNTTC	2 cut(s)	47, 966
PfeI	GAWTC	1 cut(s)	967
PfoI	TCCNGGA	1 cut(s)	1074
PkrI	GCNGC	3 cut(s)	212, 281, 799
Ppu21I	YACGTR	1 cut(s)	549
PscI	ACATGT	2 cut(s)	458, 1080
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	3 cut(s)	223, 819, 1074
PspGI	CCWGG	3 cut(s)	223, 819, 1074
PspPI	GGNCC	1 cut(s)	922
PstNI	CAGNNNCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	551, 765
RsaNI	GTAC	2 cut(s)	550, 764
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	171, 405
SatI	GCNGC	3 cut(s)	211, 280, 798
Sau3AI	GATC	3 cut(s)	673, 715, 1044
Sau96I	GGNCC	1 cut(s)	922
ScrFI	CCNGG	3 cut(s)	225, 821, 1076
SfaNI	GCATC	2 cut(s)	255, 594
SfcI	CTRYAG	1 cut(s)	894
SinI	GGWCC	1 cut(s)	922
SmiMI	CAYNNNNRTG	1 cut(s)	732
SpeI	ACTAGT	1 cut(s)	808
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	5 cut(s)	384, 416, 704, 949, 1100
SsiI	CCGC	2 cut(s)	392, 732
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	3 cut(s)	234, 276, 809
StyD4I	CCNGG	3 cut(s)	223, 819, 1074
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	3 cut(s)	273, 491, 1017
TaiI	ACGT	3 cut(s)	435, 551, 979
TaqI	TCGA	3 cut(s)	526, 621, 1085
TasI	AATT	5 cut(s)	384, 416, 704, 949, 1100
TfiI	GAWTC	1 cut(s)	967
Tru1I	TTAA	2 cut(s)	171, 405
Tru9I	TTAA	2 cut(s)	171, 405
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	3 cut(s)	210, 279, 797
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	7 cut(s)	26, 140, 297, 365, 411, 497, 975
TspGWI	ACGGA	1 cut(s)	905
VpaK11BI	GGWCC	1 cut(s)	922
XapI	RAATTY	2 cut(s)	416, 1100
XceI	RCATGY	3 cut(s)	462, 819, 1084
XmnI	GAANNNNTTC	2 cut(s)	47, 966
XspI	CTAG	3 cut(s)	234, 276, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.