Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

23758671 .. 23765288

Gene Structure 6618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCTGCTATGAGGAAGCATTCTGAGCGTAGTCACTTTGGGAATGTATTCAACAAGTTGCTGAAGCAGATTGGAAGCCCTGTGGATTTTGAACTTCCAGATTGGTTCAATAAATGGAAACCGATGAACTACACTTTTATAAAGCGCAATATATATCTCACTAAGAAGATTAAAAGACGACTTGAGGATGATGGAATATTCTGCTCATGCGCCCCATCATCACCAGGGTCTCCGACTGTTTGTGGTAGAGATTGCCACTGTGGGATGCTACTGTCTAGCTGCTCCTCAGGCTGTAAATGTGGAAGTTCATGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAGCTGGTCAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATACGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTCTGGATAATCGATGGCGAAACAAGAATAGGAATTTTTGCAACTTGCGACATAAAAAGGGGAGATCACCTCACCTATGATTATCAGTTCGTTCAATTTGGTGCAGATCAAGATTGCCATTGTGGTGCTGTTGGTTGTCGTGAAAAACTCGGTGTCCGACCTACCAAACCGAAGATGTCATCAGTTGCTGCATTGAAACTAGTAGCATGCCAGCTGGCAGTGTCCTCTCCCAAAGTAAAAGGAATGTTCTCTGCAAAAGATGTTTATCCAAATGGTGGTTTTCCTGTAGGAAGTTCTCAACATATCCGTAAGGACCATAGCCAAGGTGGTACTGCTTGTAATTGCATTGATGAAGTGATACGAATACGTCGTCCCATAAATGAGAGGTCATTCGGGGTCATCAAACGGTTTGATAATCATTCCAAAAAACATGCGATCATGTTTGAAGATGGTGGAATTGAAATCCTGGACATGTCGAAAGAAGAATGGGAATTTGTAACGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

326

Amino Acids

36.48

Weight (kDa)

8.72

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	746
AciI	CCGC	1 cut(s)	392
AclI	AACGTT	1 cut(s)	971
AcsI	RAATTY	3 cut(s)	416, 504, 962
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	802
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflIII	ACRYGT	2 cut(s)	458, 942
AgsI	TTSAA	7 cut(s)	52, 92, 109, 566, 667, 917, 932
AhlI	ACTAGT	1 cut(s)	670
AjnI	CCWGG	2 cut(s)	223, 936
AluBI	AGCT	3 cut(s)	279, 355, 685
AluI	AGCT	3 cut(s)	279, 355, 685
Alw26I	GTCTC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	279, 659
ApoI	RAATTY	3 cut(s)	416, 504, 962
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	147, 212
AspS9I	GGNCC	1 cut(s)	784
AsuHPI	GGTGA	3 cut(s)	213, 530, 535
AvaII	GGWCC	1 cut(s)	784
AxyI	CCTNAGG	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	266, 646
BccI	CCATC	4 cut(s)	185, 223, 479, 914
BciT130I	CCWGG	2 cut(s)	225, 938
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	670
BfaI	CTAG	2 cut(s)	276, 671
BfmI	CTRYAG	1 cut(s)	756
BisI	GCNGC	2 cut(s)	280, 660
BlsI	GCNGC	2 cut(s)	281, 661
Bme1390I	CCNGG	2 cut(s)	225, 938
Bme18I	GGWCC	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	784
BmrFI	CCNGG	2 cut(s)	225, 938
BmsI	GCATC	1 cut(s)	255
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	224, 793
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse118I	RCCGGY	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	286
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	225, 938
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	224, 793
BseGI	GGATG	3 cut(s)	193, 270, 400
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMII	CTCAG	3 cut(s)	15, 300, 357
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	266, 646
BsgI	GTGCAG	1 cut(s)	594
BshFI	GGCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	828
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	828
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	535, 577, 906
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	3 cut(s)	16, 299, 358
BspDI	ATCGAT	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	224, 793
BssMI	GATC	3 cut(s)	535, 577, 906
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	2 cut(s)	225, 938
Bst4CI	ACNGT	4 cut(s)	238, 260, 273, 879
BstC8I	GCNNGC	4 cut(s)	6, 679, 683, 687
BstDEI	CTNAG	4 cut(s)	24, 162, 286, 366
BstF5I	GGATG	3 cut(s)	193, 270, 400
BstHHI	GCGC	2 cut(s)	147, 212
BstKTI	GATC	3 cut(s)	538, 580, 909
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	535, 577, 906
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 288
BstNI	CCWGG	2 cut(s)	225, 938
BstNSI	RCATGY	4 cut(s)	462, 681, 905, 946
BstSCI	CCNGG	2 cut(s)	223, 936
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	266, 646
Bsu15I	ATCGAT	1 cut(s)	483
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	193, 270, 400
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	256, 696
Cac8I	GCNNGC	4 cut(s)	6, 679, 683, 687
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	147, 212
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	784
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	801
CviAII	CATG	7 cut(s)	207, 309, 459, 678, 902, 910, 943
CviJI	RGCY	8 cut(s)	78, 279, 291, 337, 355, 472, 685, 792
CviKI_1	RGCY	8 cut(s)	78, 279, 291, 337, 355, 472, 685, 792
CviQI	GTAC	1 cut(s)	801
DdeI	CTNAG	4 cut(s)	24, 162, 286, 366
DpnI	GATC	3 cut(s)	537, 579, 908
DpnII	GATC	3 cut(s)	535, 577, 906
EciI	GGCGGA	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	793
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	223, 936
EcoT14I	CCWWGG	1 cut(s)	793
ErhI	CCWWGG	1 cut(s)	793
FaeI	CATG	7 cut(s)	210, 312, 462, 681, 905, 913, 946
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	7 cut(s)	206, 308, 458, 677, 901, 909, 942
Fnu4HI	GCNGC	2 cut(s)	280, 660
FokI	GGATG	3 cut(s)	200, 277, 407
Fsp4HI	GCNGC	2 cut(s)	280, 660
FspBI	CTAG	2 cut(s)	276, 671
GlaI	GCGC	2 cut(s)	146, 211
GluI	GCNGC	2 cut(s)	280, 660
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	2 cut(s)	147, 212
Hin1II	CATG	7 cut(s)	210, 312, 462, 681, 905, 913, 946
Hin6I	GCGC	2 cut(s)	145, 210
HinP1I	GCGC	2 cut(s)	145, 210
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	3 cut(s)	213, 530, 535
Hpy188I	TCNGA	4 cut(s)	25, 234, 315, 629
Hpy188III	TCNNGA	6 cut(s)	98, 361, 381, 475, 581, 611
Hpy99I	CGWCG	1 cut(s)	843
HpyCH4III	ACNGT	4 cut(s)	238, 260, 273, 879
HpyCH4IV	ACGT	3 cut(s)	432, 838, 971
HpyCH4V	TGCA	5 cut(s)	512, 575, 662, 725, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 288
HpyF3I	CTNAG	4 cut(s)	24, 162, 286, 366
HpySE526I	ACGT	3 cut(s)	432, 838, 971
Hsp92II	CATG	7 cut(s)	210, 312, 462, 681, 905, 913, 946
HspAI	GCGC	2 cut(s)	145, 210
Kzo9I	GATC	3 cut(s)	535, 577, 906
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	2 cut(s)	266, 646
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	276, 671
MaeII	ACGT	3 cut(s)	432, 838, 971
MaeIII	GTNAC	2 cut(s)	32, 967
MalI	GATC	3 cut(s)	537, 579, 908
MboI	GATC	3 cut(s)	535, 577, 906
MboII	GAAGA	7 cut(s)	178, 355, 358, 410, 655, 929, 965
MluCI	AATT	7 cut(s)	384, 416, 504, 566, 811, 927, 962
MmeI	TCCRAC	3 cut(s)	257, 415, 652
MnlI	CCTC	7 cut(s)	6, 178, 295, 457, 551, 706, 849
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	171, 405
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	225, 938
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	225, 938
MwoI	GCNNNNNNNGC	2 cut(s)	25, 288
NdeII	GATC	3 cut(s)	535, 577, 906
NlaIII	CATG	7 cut(s)	210, 312, 462, 681, 905, 913, 946
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	4 cut(s)	462, 681, 905, 946
PaeI	GCATGC	1 cut(s)	681
PciI	ACATGT	2 cut(s)	458, 942
PcsI	WCGNNNNNNNCGW	1 cut(s)	838
PctI	GAATGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	47
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	2 cut(s)	281, 661
PscI	ACATGT	2 cut(s)	458, 942
PsiI	TTATAA	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	971
Psp6I	CCWGG	2 cut(s)	223, 936
PspGI	CCWGG	2 cut(s)	223, 936
PspPI	GGNCC	1 cut(s)	784
PstNI	CAGNNNCTG	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	1 cut(s)	802
RsaNI	GTAC	1 cut(s)	801
RseI	CAYNNNNRTG	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	171, 405
SatI	GCNGC	2 cut(s)	280, 660
Sau3AI	GATC	3 cut(s)	535, 577, 906
Sau96I	GGNCC	1 cut(s)	784
ScrFI	CCNGG	2 cut(s)	225, 938
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	670
SphI	GCATGC	1 cut(s)	681
Sse9I	AATT	7 cut(s)	384, 416, 504, 566, 811, 927, 962
SsiI	CCGC	1 cut(s)	392
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	2 cut(s)	276, 671
StyD4I	CCNGG	2 cut(s)	223, 936
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	4 cut(s)	238, 260, 273, 879
TaiI	ACGT	3 cut(s)	435, 841, 974
TaqI	TCGA	2 cut(s)	483, 947
TasI	AATT	7 cut(s)	384, 416, 504, 566, 811, 927, 962
Tru1I	TTAA	2 cut(s)	171, 405
Tru9I	TTAA	2 cut(s)	171, 405
TscAI	CASTG	2 cut(s)	263, 696
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	279, 659
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	5 cut(s)	140, 297, 365, 411, 837
TspGWI	ACGGA	1 cut(s)	767
TspRI	CASTG	2 cut(s)	263, 696
Van91I	CCANNNNNTGG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	784
XapI	RAATTY	3 cut(s)	416, 504, 962
XceI	RCATGY	4 cut(s)	462, 681, 905, 946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	276, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.