Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

10452526 .. 10458584

Gene Structure 6059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1141800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCCTGCTATGAAGAAGAATTCTGAGCGAAGTCACATTGGGAATGTCTTCAACAAGTTGCTGAAGCAGATTGGAAACCCTGTTGATTTTGAACTTCCAGATTGGTTCAATAAGTGGAAACCCATGCCCTACACTTTTATCAAGCGCAATATATATCACACCAAGAGGATTAAAAGACGACTTGAGGATGATGGCATATTCTGTTCCTGCAACCCATCACTAGAGTCTTCTAGCGTTTGTGGTAGAGATTGCCATTGTGGGATGCTTCTGTCTAGCTGCTCCTCAGCTTGTAAATGTGGAAGTTCCTGTCTGAACAAACCGTTCCAGCACAGACCTGTGAAGAAGATGAAACTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATATGTGGGAGAAGTGATTGATGACAAAACATGTGAGCAAAGGCTGTGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGATGCCACATACAAGGGAAACAAGTCAAGATATATAAACCATAGTTGTTGTCCTAATACTGAGATGCAAAAATGGATAATCGATGGTGAAACAAGAATTGGTATATTCGCAACTCGTGACATAAAAATGGGCGAGCACCTGACCTATGATTATCAGTTTGTTCAATTTGGCGCAGATCAAGATTGCCATTGTGGTGCGATTGGTTGTCGACGAAAACTTGGTGTCAAACCTACCAAGTCAAAGATATCGTCAGATGCTGCGTTGAAACTAGTAGCATGCCAGGTGGCTGTGTCCTCCCCTAAATTGAAAGCTATTATCTCTGCAAAAGATGTTATTCAGAATGGGGGTCTGCATATTGGAAATTCAGAACCCATCCATAACCAAAGCGATAGATGTTCTTGTAATTGCATTGGAGAAGTGATTCGAATAAGTCGCCCCCCAAATCAGTGGTCTTTTGGGATTATCAAACGGTTTGATAAATATTCCAGAAAACACTCGATCATGTTTGAAGATGGTGGCATTGAATTCCTTGACATGTCAAAAGAAGATTGGGAGCTTGTAACATTGATTCTGCAGAAGCAAGGACGACTCGTGGTAGTTGGAAACCGTAGCATGTATAACAGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

389

Amino Acids

44.12

Weight (kDa)

8.92

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	125 - 231	1.4e-26	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	745
AciI	CCGC	1 cut(s)	389
AcsI	RAATTY	4 cut(s)	19, 413, 898, 1061
AcuI	CTGAAG	1 cut(s)	83
AflIII	ACRYGT	2 cut(s)	455, 1071
AgsI	TTSAA	8 cut(s)	52, 92, 109, 701, 802, 844, 1046, 1061
AhlI	ACTAGT	1 cut(s)	805
AjnI	CCWGG	1 cut(s)	816
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	4 cut(s)	276, 287, 848, 1093
AluI	AGCT	4 cut(s)	276, 287, 848, 1093
Alw21I	GWGCWC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	794
ApeKI	GCWGC	2 cut(s)	276, 794
ApoI	RAATTY	4 cut(s)	19, 413, 898, 1061
ArsI	GACNNNNNNTTYG	4 cut(s)	770, 802, 971, 1003
Asp700I	GAANNNNTTC	2 cut(s)	47, 957
AspLEI	GCGC	2 cut(s)	147, 710
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	961
BauI	CACGAG	2 cut(s)	651, 1127
BbsI	GAAGAC	2 cut(s)	40, 219
Bbv12I	GWGCWC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	263, 781
BccI	CCATC	5 cut(s)	185, 223, 614, 917, 1043
BciT130I	CCWGG	1 cut(s)	818
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	5 cut(s)	221, 231, 273, 806, 1165
BfmI	CTRYAG	1 cut(s)	1109
BisI	GCNGC	2 cut(s)	277, 795
BlsI	GCNGC	2 cut(s)	278, 796
Bme1390I	CCNGG	1 cut(s)	818
BmrFI	CCNGG	1 cut(s)	818
BmsI	GCATC	4 cut(s)	252, 529, 591, 781
BpiI	GAAGAC	2 cut(s)	40, 219
Bpu10I	CCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	818
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	4 cut(s)	193, 267, 397, 909
BseMII	CTCAG	4 cut(s)	15, 297, 354, 588
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	263, 781
BshVI	ATCGAT	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	675
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	712, 1035
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	4 cut(s)	16, 296, 355, 589
BspDI	ATCGAT	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	1113
BspT104I	TTCGAA	1 cut(s)	961
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	712, 1035
BssSI	CACGAG	2 cut(s)	651, 1127
Bst2BI	CACGAG	2 cut(s)	651, 1127
Bst2UI	CCWGG	1 cut(s)	818
Bst4CI	ACNGT	5 cut(s)	321, 488, 1008, 1145, 1160
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	3 cut(s)	6, 671, 814
BstDEI	CTNAG	4 cut(s)	24, 283, 363, 597
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	4 cut(s)	193, 267, 397, 909
BstHHI	GCGC	2 cut(s)	147, 710
BstKTI	GATC	2 cut(s)	715, 1038
BstMBI	GATC	2 cut(s)	712, 1035
BstNI	CCWGG	1 cut(s)	818
BstNSI	RCATGY	4 cut(s)	459, 816, 1075, 1153
BstSCI	CCNGG	1 cut(s)	816
BstSFI	CTRYAG	1 cut(s)	1109
BstV1I	GCAGC	2 cut(s)	263, 781
BstV2I	GAAGAC	2 cut(s)	40, 219
BstXI	CCANNNNNNTGG	1 cut(s)	984
Bsu15I	ATCGAT	1 cut(s)	618
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	4 cut(s)	193, 267, 397, 909
BtsIMutI	CAGTG	1 cut(s)	989
Cac8I	GCNNGC	3 cut(s)	6, 671, 814
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	147, 710
ClaI	ATCGAT	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	6 cut(s)	124, 456, 813, 1039, 1072, 1150
CviJI	RGCY	6 cut(s)	276, 287, 469, 824, 848, 1093
CviKI_1	RGCY	6 cut(s)	276, 287, 469, 824, 848, 1093
DdeI	CTNAG	4 cut(s)	24, 283, 363, 597
DpnI	GATC	2 cut(s)	714, 1037
DpnII	GATC	2 cut(s)	712, 1035
EciI	GGCGGA	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	83
EcoRI	GAATTC	2 cut(s)	19, 1061
EcoRII	CCWGG	1 cut(s)	816
EcoRV	GATATC	1 cut(s)	783
FaeI	CATG	6 cut(s)	127, 459, 816, 1042, 1075, 1153
FatI	CATG	6 cut(s)	123, 455, 812, 1038, 1071, 1149
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	277, 795
FokI	GGATG	4 cut(s)	200, 274, 404, 896
Fsp4HI	GCNGC	2 cut(s)	277, 795
FspBI	CTAG	5 cut(s)	221, 231, 273, 806, 1165
GlaI	GCGC	2 cut(s)	146, 709
GluI	GCNGC	2 cut(s)	277, 795
HhaI	GCGC	2 cut(s)	147, 710
Hin1II	CATG	6 cut(s)	127, 459, 816, 1042, 1075, 1153
Hin6I	GCGC	2 cut(s)	145, 708
HinP1I	GCGC	2 cut(s)	145, 708
HincII	GTYRAC	1 cut(s)	746
HindII	GTYRAC	1 cut(s)	746
HinfI	GANTC	4 cut(s)	224, 958, 1105, 1125
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	1 cut(s)	746
Hpy188I	TCNGA	5 cut(s)	25, 312, 790, 876, 904
Hpy188III	TCNNGA	7 cut(s)	98, 378, 524, 564, 653, 716, 1023
Hpy8I	GTNNAC	1 cut(s)	746
Hpy99I	CGWCG	1 cut(s)	750
HpyCH4III	ACNGT	5 cut(s)	321, 488, 1008, 1145, 1160
HpyCH4V	TGCA	6 cut(s)	210, 604, 860, 889, 945, 1111
HpyF3I	CTNAG	4 cut(s)	24, 283, 363, 597
Hsp92II	CATG	6 cut(s)	127, 459, 816, 1042, 1075, 1153
HspAI	GCGC	2 cut(s)	145, 708
Kzo9I	GATC	2 cut(s)	712, 1035
LmnI	GCTCC	2 cut(s)	284, 1090
Lsp1109I	GCAGC	2 cut(s)	263, 781
LweI	GCATC	4 cut(s)	252, 529, 591, 781
MaeI	CTAG	5 cut(s)	221, 231, 273, 806, 1165
MaeIII	GTNAC	4 cut(s)	32, 653, 1096, 1160
MalI	GATC	2 cut(s)	714, 1037
MboI	GATC	2 cut(s)	712, 1035
MboII	GAAGA	9 cut(s)	25, 28, 40, 219, 352, 355, 407, 1058, 1094
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	9 cut(s)	19, 381, 413, 633, 701, 839, 898, 940, 1061
MlyI	GAGTC	2 cut(s)	233, 1119
MmeI	TCCRAC	1 cut(s)	1117
MnlI	CCTC	4 cut(s)	159, 178, 292, 841
MroXI	GAANNNNTTC	2 cut(s)	47, 957
MseI	TTAA	3 cut(s)	171, 357, 402
MslI	CAYNNNNRTG	2 cut(s)	662, 729
MspR9I	CCNGG	1 cut(s)	818
MvaI	CCWGG	1 cut(s)	818
NdeII	GATC	2 cut(s)	712, 1035
NlaIII	CATG	6 cut(s)	127, 459, 816, 1042, 1075, 1153
NmuCI	GTSAC	2 cut(s)	32, 653
NspI	RCATGY	4 cut(s)	459, 816, 1075, 1153
NspV	TTCGAA	1 cut(s)	961
PaeI	GCATGC	1 cut(s)	816
PciI	ACATGT	2 cut(s)	455, 1071
PdmI	GAANNNNTTC	2 cut(s)	47, 957
PfeI	GAWTC	2 cut(s)	958, 1105
PkrI	GCNGC	2 cut(s)	278, 796
PleI	GAGTC	2 cut(s)	232, 1119
PpsI	GAGTC	2 cut(s)	232, 1119
PscI	ACATGT	2 cut(s)	455, 1071
Psp6I	CCWGG	1 cut(s)	816
PspGI	CCWGG	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	1113
PstNI	CAGNNNCTG	1 cut(s)	794
RseI	CAYNNNNRTG	2 cut(s)	662, 729
SalI	GTCGAC	1 cut(s)	744
SaqAI	TTAA	3 cut(s)	171, 357, 402
SatI	GCNGC	2 cut(s)	277, 795
Sau3AI	GATC	2 cut(s)	712, 1035
SchI	GAGTC	2 cut(s)	233, 1119
ScrFI	CCNGG	1 cut(s)	818
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	9 cut(s)	278, 289, 337, 678, 683, 769, 822, 850, 1095
SfaNI	GCATC	4 cut(s)	252, 529, 591, 781
SfcI	CTRYAG	1 cut(s)	1109
SfuI	TTCGAA	1 cut(s)	961
SmiMI	CAYNNNNRTG	2 cut(s)	662, 729
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	805
SphI	GCATGC	1 cut(s)	816
Sse9I	AATT	9 cut(s)	19, 381, 413, 633, 701, 839, 898, 940, 1061
SsiI	CCGC	1 cut(s)	389
SspI	AATATT	1 cut(s)	1019
SspMI	CTAG	5 cut(s)	221, 231, 273, 806, 1165
StyD4I	CCNGG	1 cut(s)	816
TaaI	ACNGT	5 cut(s)	321, 488, 1008, 1145, 1160
TaqI	TCGA	5 cut(s)	523, 618, 745, 961, 1034
TasI	AATT	9 cut(s)	19, 381, 413, 633, 701, 839, 898, 940, 1061
TfiI	GAWTC	2 cut(s)	958, 1105
Tru1I	TTAA	3 cut(s)	171, 357, 402
Tru9I	TTAA	3 cut(s)	171, 357, 402
TscAI	CASTG	1 cut(s)	989
TseFI	GTSAC	2 cut(s)	32, 653
TseI	GCWGC	2 cut(s)	276, 794
Tsp45I	GTSAC	2 cut(s)	32, 653
TspDTI	ATGAA	4 cut(s)	26, 362, 408, 494
TspRI	CASTG	1 cut(s)	989
XapI	RAATTY	4 cut(s)	19, 413, 898, 1061
XceI	RCATGY	4 cut(s)	459, 816, 1075, 1153
XmiI	GTMKAC	1 cut(s)	745
XmnI	GAANNNNTTC	2 cut(s)	47, 957
XspI	CTAG	5 cut(s)	221, 231, 273, 806, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.