Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

22247879 .. 22255800

Gene Structure 7922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G271600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCCTGCTATGAACAAGAATTCTGAGCGAAGTCACATTGGGAACGTATTCAACAAGTTGCTGAAGCAGATTGGAAATCCTGTAGATTTTGAACTTCCAGATTGGTTTAATAAATGGAAACCGATGCCCTACACTTTTATAAAGCGCAATATATATCTCACGAAGAAGATTAAAAGACGACTTGAGGATGATGGCATATTCTGTTCCTGCAGCCCATCACAAGGGTCTTCTAGTGTTTGTGGTAGAGATTGCCATTGTGGGATGCTTCTGTCTAGCTGTTCCTCAGTCTGTAAATGTGGAAGTTCCTGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAACTGGTGCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATATGTGGGAGAAGTTATTGATGACAAAACATGCGAGGAAAGGCTATGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGATGCCACATACAAAGGAAACAAGTCGAGATATATAAACCATAGTTGTTGTCCTAATACTGAGATGCAAAAATGGATAATCGATGGCGAAACAAGAATTGGTATATTCGCAACTCGTGACGTAAAAAAGGGAGAACACCTGACCTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGCGGTGCACGTGGTTGTCGGCGAAAACTTGGTGTCAGACCTACCAAGCCAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCATGTCAGGTGGCTGTGTCCTCTCCCAAATTGAAAGCAATTCTTTCTGCTAAAGACGTTTATCAGAACGGGGGTCTACATATAGGAAATTCACAACCTTTCCATAACCAAAGAGGTACACGTTCTTGTAATTGCATTGGTGAAGTGATTCGAATAAGTCGCCCCACGAATCAGAGATCCTTTGGGATTATCAAGCGGTTTGATAGATATTCCAAAAAACACTCAATCATGTTTGAAGATGGTGGCATCGAATTCCTTGACATGTCAAAAGAAGAATGGGAACTTGTAACACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

369

Amino Acids

41.89

Weight (kDa)

9.05

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	886
AciI	CCGC	3 cut(s)	389, 729, 1006
AclWI	GGATC	1 cut(s)	981
AcsI	RAATTY	4 cut(s)	19, 413, 898, 1061
AcuI	CTGAAG	1 cut(s)	83
AcvI	CACGTG	1 cut(s)	737
AfaI	GTAC	1 cut(s)	928
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	929, 1071
AgsI	TTSAA	6 cut(s)	52, 92, 701, 802, 844, 1046
AhlI	ACTAGT	1 cut(s)	805
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	736
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	981
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	1 cut(s)	332
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	210, 794
ApoI	RAATTY	4 cut(s)	19, 413, 898, 1061
Asp700I	GAANNNNTTC	2 cut(s)	47, 957
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	962
AsuII	TTCGAA	1 cut(s)	961
BaeGI	GKGCMC	1 cut(s)	736
BauI	CACGAG	1 cut(s)	651
BbrPI	CACGTG	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	222, 781
BccI	CCATC	4 cut(s)	185, 223, 614, 1043
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	3 cut(s)	231, 273, 806
BfmI	CTRYAG	2 cut(s)	81, 208
BisI	GCNGC	2 cut(s)	211, 795
BlsI	GCNGC	2 cut(s)	212, 796
BmsI	GCATC	5 cut(s)	114, 252, 529, 591, 1065
BpiI	GAAGAC	1 cut(s)	219
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	618
BsaAI	YACGTR	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	724
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	487
BseGI	GGATG	3 cut(s)	193, 267, 397
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	4 cut(s)	15, 297, 354, 588
BseNI	ACTGG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	2 cut(s)	222, 781
BsgI	GTGCAG	2 cut(s)	377, 729
BshFI	GGCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	2 cut(s)	712, 986
BspACI	CCGC	3 cut(s)	389, 729, 1006
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	4 cut(s)	16, 296, 355, 589
BspDI	ATCGAT	1 cut(s)	618
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	981
BspT104I	TTCGAA	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	724
BsrFI	RCCGGY	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	2 cut(s)	712, 986
BssSI	CACGAG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	651
Bst4CI	ACNGT	2 cut(s)	488, 1104
BstBAI	YACGTR	1 cut(s)	737
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	24, 283, 363, 597
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	3 cut(s)	193, 267, 397
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	715, 989
BstMBI	GATC	2 cut(s)	712, 986
BstNSI	RCATGY	3 cut(s)	459, 816, 1075
BstSFI	CTRYAG	2 cut(s)	81, 208
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	2 cut(s)	222, 781
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	334
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	193, 267, 397
BtsIMutI	CAGTG	1 cut(s)	1100
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	330
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	927
CviAII	CATG	4 cut(s)	456, 813, 1039, 1072
CviJI	RGCY	6 cut(s)	213, 276, 334, 469, 775, 824
CviKI_1	RGCY	6 cut(s)	213, 276, 334, 469, 775, 824
CviQI	GTAC	1 cut(s)	927
DdeI	CTNAG	4 cut(s)	24, 283, 363, 597
DpnI	GATC	2 cut(s)	714, 988
DpnII	GATC	2 cut(s)	712, 986
EciI	GGCGGA	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	83
Eco72I	CACGTG	1 cut(s)	737
EcoRI	GAATTC	2 cut(s)	19, 1061
FaeI	CATG	4 cut(s)	459, 816, 1042, 1075
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FatI	CATG	4 cut(s)	455, 812, 1038, 1071
FblI	GTMKAC	1 cut(s)	886
Fnu4HI	GCNGC	2 cut(s)	211, 795
FokI	GGATG	3 cut(s)	200, 274, 404
Fsp4HI	GCNGC	2 cut(s)	211, 795
FspBI	CTAG	3 cut(s)	231, 273, 806
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	211, 795
HaeIII	GGCC	1 cut(s)	334
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	459, 816, 1042, 1075
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	958, 979
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	3 cut(s)	734, 887, 929
Hpy188I	TCNGA	5 cut(s)	25, 312, 764, 876, 984
Hpy188III	TCNNGA	7 cut(s)	98, 160, 378, 524, 564, 653, 716
Hpy8I	GTNNAC	3 cut(s)	734, 887, 929
HpyCH4III	ACNGT	2 cut(s)	488, 1104
HpyCH4IV	ACGT	5 cut(s)	45, 657, 736, 867, 931
HpyCH4V	TGCA	6 cut(s)	210, 358, 604, 710, 734, 945
HpyF3I	CTNAG	4 cut(s)	24, 283, 363, 597
HpySE526I	ACGT	5 cut(s)	45, 657, 736, 867, 931
Hsp92II	CATG	4 cut(s)	459, 816, 1042, 1075
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	712, 986
Lsp1109I	GCAGC	2 cut(s)	222, 781
LweI	GCATC	5 cut(s)	114, 252, 529, 591, 1065
MaeI	CTAG	3 cut(s)	231, 273, 806
MaeII	ACGT	5 cut(s)	45, 657, 736, 867, 931
MaeIII	GTNAC	3 cut(s)	32, 653, 1096
MalI	GATC	2 cut(s)	714, 988
MboI	GATC	2 cut(s)	712, 986
MboII	GAAGA	8 cut(s)	175, 178, 219, 352, 355, 407, 1058, 1094
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	1 cut(s)	736
MnlI	CCTC	5 cut(s)	178, 292, 454, 841, 917
MroXI	GAANNNNTTC	2 cut(s)	47, 957
MseI	TTAA	3 cut(s)	108, 171, 402
MslI	CAYNNNNRTG	1 cut(s)	729
MspI	CCGG	1 cut(s)	331
NdeII	GATC	2 cut(s)	712, 986
NlaIII	CATG	4 cut(s)	459, 816, 1042, 1075
NmuCI	GTSAC	2 cut(s)	32, 653
NspI	RCATGY	3 cut(s)	459, 816, 1075
NspV	TTCGAA	1 cut(s)	961
PciI	ACATGT	1 cut(s)	1071
PdmI	GAANNNNTTC	2 cut(s)	47, 957
PfeI	GAWTC	2 cut(s)	958, 979
PkrI	GCNGC	2 cut(s)	212, 796
PmaCI	CACGTG	1 cut(s)	737
PmlI	CACGTG	1 cut(s)	737
Ppu21I	YACGTR	1 cut(s)	737
PscI	ACATGT	1 cut(s)	1071
PsiI	TTATAA	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	986
RsaI	GTAC	1 cut(s)	928
RsaNI	GTAC	1 cut(s)	927
RseI	CAYNNNNRTG	1 cut(s)	729
SaqAI	TTAA	3 cut(s)	108, 171, 402
SatI	GCNGC	2 cut(s)	211, 795
Sau3AI	GATC	2 cut(s)	712, 986
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	5 cut(s)	114, 252, 529, 591, 1065
SfcI	CTRYAG	2 cut(s)	81, 208
SfuI	TTCGAA	1 cut(s)	961
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	805
SsiI	CCGC	3 cut(s)	389, 729, 1006
SspMI	CTAG	3 cut(s)	231, 273, 806
TaaI	ACNGT	2 cut(s)	488, 1104
TaiI	ACGT	5 cut(s)	48, 660, 739, 870, 934
TaqI	TCGA	5 cut(s)	523, 563, 618, 961, 1059
TfiI	GAWTC	2 cut(s)	958, 979
Tru1I	TTAA	3 cut(s)	108, 171, 402
Tru9I	TTAA	3 cut(s)	108, 171, 402
TscAI	CASTG	1 cut(s)	1107
TseFI	GTSAC	2 cut(s)	32, 653
TseI	GCWGC	2 cut(s)	210, 794
Tsp45I	GTSAC	2 cut(s)	32, 653
TspDTI	ATGAA	4 cut(s)	26, 362, 408, 494
TspRI	CASTG	1 cut(s)	1107
VneI	GTGCAC	1 cut(s)	732
XapI	RAATTY	4 cut(s)	19, 413, 898, 1061
XceI	RCATGY	3 cut(s)	459, 816, 1075
XmiI	GTMKAC	1 cut(s)	886
XmnI	GAANNNNTTC	2 cut(s)	47, 957
XspI	CTAG	3 cut(s)	231, 273, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.