Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457195.1

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1658

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 649 bp

gatgctactgtctagctgctcctcaggctgtaaatgtggaagttcatgtctgaacaaaccattccagcaccggcctgtgaagaagatgaaactggtgaagactgagaaatgtggttctggaattgtggcggatgaagatattaagcaaggagaatttgtgatagaatacgttggagaagttattgatgacaaaacatgtgaggaaaggctttggaatatgaaacaccgtggagaaacaaacttttacttatgtgaaatcaatcgagatatggttattgacgccacgtacaaggggaacaaatcaagatatataaaccatagctgttgtcccaatactgagatgcaaaaatggataatcgatggtgaaacaagaataggcatatttgcaacttgcgacataaaaaagggcgatcacctcacctatgattatcagtttgttcaatttggtgcagatcaagattgccattgcggtgctgttggttgtcgtgaaaaacttggtgtacgacctaccaaaccaaagatgtcatcagttgctgctttgaaactagtagcatgccaggtggctgtgtcctctcccaaagtgaaaacaatgctctctgcaaaagatgttagtgttggtttgcttttaacattcttccaaatattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

215

Amino Acids

24.05

Weight (kDa)

8.48

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	129, 469
AcsI	RAATTY	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	2 cut(s)	288, 502
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	441, 542
AhlI	ACTAGT	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	2 cut(s)	16, 322
AluI	AGCT	2 cut(s)	16, 322
AlwNI	CAGNNNCTG	1 cut(s)	534
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	16, 534
ApoI	RAATTY	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	107, 375, 405, 410
AxyI	CCTNAGG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	3, 521
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	558
BcuI	ACTAGT	1 cut(s)	545
BfaI	CTAG	2 cut(s)	13, 546
BisI	GCNGC	2 cut(s)	17, 535
BlsI	GCNGC	2 cut(s)	18, 536
Bme1390I	CCNGG	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	3 cut(s)	37, 94, 328
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	3, 521
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	410, 452
BspACI	CCGC	2 cut(s)	129, 469
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	36, 95, 329
BspDI	ATCGAT	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	2 cut(s)	410, 452
BssNI	GRCGYC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	10, 228
BstACI	GRCGYC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	3 cut(s)	23, 103, 337
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	2 cut(s)	413, 455
BstMBI	GATC	2 cut(s)	410, 452
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	2 cut(s)	199, 556
BstSCI	CCNGG	1 cut(s)	556
BstV1I	GCAGC	2 cut(s)	3, 521
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	358
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	554
CaiI	CAGNNNCTG	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	287, 501
CviAII	CATG	3 cut(s)	46, 196, 553
CviJI	RGCY	6 cut(s)	16, 28, 74, 209, 322, 564
CviKI_1	RGCY	6 cut(s)	16, 28, 74, 209, 322, 564
CviQI	GTAC	2 cut(s)	287, 501
DdeI	CTNAG	3 cut(s)	23, 103, 337
DpnI	GATC	2 cut(s)	412, 454
DpnII	GATC	2 cut(s)	410, 452
EciI	GGCGGA	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	49, 199, 556
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	45, 195, 552
Fnu4HI	GCNGC	2 cut(s)	17, 535
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	17, 535
FspBI	CTAG	2 cut(s)	13, 546
GluI	GCNGC	2 cut(s)	17, 535
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	49, 199, 556
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	4 cut(s)	107, 375, 405, 410
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	5 cut(s)	118, 264, 304, 456, 486
Hpy8I	GTNNAC	1 cut(s)	501
HpyCH4III	ACNGT	2 cut(s)	10, 228
HpyCH4IV	ACGT	2 cut(s)	169, 285
HpyCH4V	TGCA	4 cut(s)	344, 387, 450, 600
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	23, 103, 337
HpySE526I	ACGT	2 cut(s)	169, 285
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	49, 199, 556
Kzo9I	GATC	2 cut(s)	410, 452
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	8 cut(s)	10, 78, 78, 84, 88, 103, 543, 570
Lsp1109I	GCAGC	2 cut(s)	3, 521
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	13, 546
MaeII	ACGT	2 cut(s)	169, 285
MalI	GATC	2 cut(s)	412, 454
MboI	GATC	2 cut(s)	410, 452
MboII	GAAGA	5 cut(s)	92, 95, 110, 147, 626
MluCI	AATT	3 cut(s)	121, 153, 441
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	4 cut(s)	32, 194, 426, 581
MseI	TTAA	2 cut(s)	142, 627
MslI	CAYNNNNRTG	1 cut(s)	469
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	410, 452
NlaIII	CATG	3 cut(s)	49, 199, 556
NspI	RCATGY	2 cut(s)	199, 556
PaeI	GCATGC	1 cut(s)	556
PciI	ACATGT	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	18, 536
Ppu21I	YACGTR	1 cut(s)	286
PscI	ACATGT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	534
RsaI	GTAC	2 cut(s)	288, 502
RsaNI	GTAC	2 cut(s)	287, 501
RseI	CAYNNNNRTG	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	142, 627
SatI	GCNGC	2 cut(s)	17, 535
Sau3AI	GATC	2 cut(s)	410, 452
ScrFI	CCNGG	1 cut(s)	558
SetI	ASST	8 cut(s)	18, 172, 288, 324, 418, 423, 509, 562
SfaNI	GCATC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	469
SpeI	ACTAGT	1 cut(s)	545
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	3 cut(s)	121, 153, 441
SsiI	CCGC	2 cut(s)	129, 469
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	13, 546
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	10, 228
TaiI	ACGT	2 cut(s)	172, 288
TaqI	TCGA	2 cut(s)	263, 358
TasI	AATT	3 cut(s)	121, 153, 441
Tru1I	TTAA	2 cut(s)	142, 627
Tru9I	TTAA	2 cut(s)	142, 627
TseI	GCWGC	2 cut(s)	16, 534
TspDTI	ATGAA	4 cut(s)	34, 102, 148, 234
XapI	RAATTY	1 cut(s)	153
XceI	RCATGY	2 cut(s)	199, 556
XspI	CTAG	2 cut(s)	13, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.