Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

80750 .. 88927

Gene Structure 8178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTACTGTCTAGCTGCTCCTCAGGCTGTAAATGTGGAAGTTCATGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAACTGGTGAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATACGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGACGCCACGTACAAGGGGAACAAATCAAGATATATAAACCATAGCTGTTGTCCCAATACTGAGATGCAAAAATGGATAATCGATGGTGAAACAAGAATAGGCATATTTGCAACTTGCGACATAAAAAAGGGCGATCACCTCACCTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGCGGTGCTGTTGGTTGTCGTGAAAAACTTGGTGTACGACCTACCAAACCAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCATGCCAGGTGGCTGTGTCCTCTCCCAAAGTGAAAACAATGCTCTCTGCAAAAGATGTTTATCTGGATGGTGGTTTTCCTATAGGAAGTTCTCAACCTATCCGTAAGGACCATAACCAAGGTGCTACTGCTTGTAATTGCATTGATGAAGTGATTCAAATACGTCGTCCCATAAATCAGAGGTCATTCGGGGTTATCAAACGGTTTGATAATCATTCCAAAAAACACGCGATCATGTTTGAAGATGGTGGCATTGAAATCCTGGACATGTCGAAAGAAGAATGGGAATTTGTAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

283

Amino Acids

31.81

Weight (kDa)

8.08

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	38 - 144	6.1e-26	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	779
AciI	CCGC	2 cut(s)	128, 468
AcsI	RAATTY	2 cut(s)	152, 836
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	287, 501
AflIII	ACRYGT	2 cut(s)	194, 816
AgsI	TTSAA	5 cut(s)	440, 541, 707, 791, 806
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	2 cut(s)	555, 810
AluBI	AGCT	2 cut(s)	15, 321
AluI	AGCT	2 cut(s)	15, 321
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	15, 533
ApoI	RAATTY	2 cut(s)	152, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	700, 732
Asp700I	GAANNNNTTC	1 cut(s)	702
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	4 cut(s)	106, 374, 404, 409
AvaII	GGWCC	1 cut(s)	658
AxyI	CCTNAGG	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	2, 520
BccI	CCATC	3 cut(s)	353, 611, 788
BciT130I	CCWGG	2 cut(s)	557, 812
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	2 cut(s)	12, 545
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	2 cut(s)	16, 534
BlsI	GCNGC	2 cut(s)	17, 535
Bme1390I	CCNGG	2 cut(s)	557, 812
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	658
BmrFI	CCNGG	2 cut(s)	557, 812
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	226, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	557, 812
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	226, 667
BseGI	GGATG	2 cut(s)	136, 622
BseJI	GATNNNNATC	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	36, 93, 327
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	2, 520
BsgI	GTGCAG	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	312, 702
BsmFI	GGGAC	2 cut(s)	312, 702
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	409, 451, 780
BspACI	CCGC	2 cut(s)	128, 468
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	35, 94, 328
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	226, 667
BssMI	GATC	3 cut(s)	409, 451, 780
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	2 cut(s)	557, 812
Bst4CI	ACNGT	3 cut(s)	9, 227, 753
BstACI	GRCGYC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	22, 102, 336
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	136, 622
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	3 cut(s)	412, 454, 783
BstMBI	GATC	3 cut(s)	409, 451, 780
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	2 cut(s)	557, 812
BstNSI	RCATGY	3 cut(s)	198, 555, 820
BstSCI	CCNGG	2 cut(s)	555, 810
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	2, 520
BstV2I	GAAGAC	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	136, 622
Cac8I	GCNNGC	1 cut(s)	553
CaiI	CAGNNNCTG	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	658
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	286, 500
CviAII	CATG	5 cut(s)	45, 195, 552, 784, 817
CviJI	RGCY	6 cut(s)	15, 27, 73, 208, 321, 563
CviKI_1	RGCY	6 cut(s)	15, 27, 73, 208, 321, 563
CviQI	GTAC	2 cut(s)	286, 500
DdeI	CTNAG	3 cut(s)	22, 102, 336
DpnI	GATC	3 cut(s)	411, 453, 782
DpnII	GATC	3 cut(s)	409, 451, 780
EciI	GGCGGA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	658
Eco81I	CCTNAGG	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	555, 810
EcoT14I	CCWWGG	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	5 cut(s)	48, 198, 555, 787, 820
FaqI	GGGAC	2 cut(s)	312, 702
FatI	CATG	5 cut(s)	44, 194, 551, 783, 816
Fnu4HI	GCNGC	2 cut(s)	16, 534
FokI	GGATG	2 cut(s)	143, 629
Fsp4HI	GCNGC	2 cut(s)	16, 534
FspBI	CTAG	2 cut(s)	12, 545
GluI	GCNGC	2 cut(s)	16, 534
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	48, 198, 555, 787, 820
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	4 cut(s)	106, 374, 404, 409
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	51, 729
Hpy188III	TCNNGA	6 cut(s)	117, 263, 303, 455, 485, 614
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	717
HpyCH4III	ACNGT	3 cut(s)	9, 227, 753
HpyCH4IV	ACGT	3 cut(s)	168, 284, 712
HpyCH4V	TGCA	5 cut(s)	343, 386, 449, 599, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	22, 102, 336
HpySE526I	ACGT	3 cut(s)	168, 284, 712
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	48, 198, 555, 787, 820
Kzo9I	GATC	3 cut(s)	409, 451, 780
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	2, 520
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	12, 545
MaeII	ACGT	3 cut(s)	168, 284, 712
MaeIII	GTNAC	1 cut(s)	841
MalI	GATC	3 cut(s)	411, 453, 782
MboI	GATC	3 cut(s)	409, 451, 780
MboII	GAAGA	6 cut(s)	91, 94, 109, 146, 803, 839
MluCI	AATT	5 cut(s)	120, 152, 440, 685, 836
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	5 cut(s)	31, 193, 425, 580, 723
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	557, 812
MvaI	CCWGG	2 cut(s)	557, 812
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	3 cut(s)	409, 451, 780
NlaIII	CATG	5 cut(s)	48, 198, 555, 787, 820
NspI	RCATGY	3 cut(s)	198, 555, 820
PaeI	GCATGC	1 cut(s)	555
PciI	ACATGT	2 cut(s)	194, 816
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	703
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	2 cut(s)	17, 535
Ppu21I	YACGTR	1 cut(s)	285
PscI	ACATGT	2 cut(s)	194, 816
Psp6I	CCWGG	2 cut(s)	555, 810
PspGI	CCWGG	2 cut(s)	555, 810
PspPI	GGNCC	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	2 cut(s)	287, 501
RsaNI	GTAC	2 cut(s)	286, 500
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	16, 534
Sau3AI	GATC	3 cut(s)	409, 451, 780
Sau96I	GGNCC	1 cut(s)	658
ScrFI	CCNGG	2 cut(s)	557, 812
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	468
SpeI	ACTAGT	1 cut(s)	544
SphI	GCATGC	1 cut(s)	555
Sse9I	AATT	5 cut(s)	120, 152, 440, 685, 836
SsiI	CCGC	2 cut(s)	128, 468
SspMI	CTAG	2 cut(s)	12, 545
StyD4I	CCNGG	2 cut(s)	555, 810
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	3 cut(s)	9, 227, 753
TaiI	ACGT	3 cut(s)	171, 287, 715
TaqI	TCGA	3 cut(s)	262, 357, 821
TasI	AATT	5 cut(s)	120, 152, 440, 685, 836
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	2 cut(s)	15, 533
TspDTI	ATGAA	5 cut(s)	33, 101, 147, 233, 711
TspGWI	ACGGA	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	2 cut(s)	152, 836
XceI	RCATGY	3 cut(s)	198, 555, 820
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	2 cut(s)	12, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.