Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004078

Physical Location & Seq

Genomic Coordinates Reverse (-)

70402 .. 77332

Gene Structure 6931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCCTGCTATGAAGAAGCATACTGAGCGCAGTCACATTGGGAATGTATTCAACAAGTTGCTGAAGCAGATTGGAAGTCCTGTGGATTTTGAACTTCCAGATTGGTTCAGTAAATGGAAACCCATGAACTACACTTTTATAAAGCGCAATATATATCTCACTAAGAGGATTAAAAGACGACTTGAAGATGATGGAATATTCTGCTCATGCTGCCCATCATCACCAGGGTCTCCTAGTGTTTGTGGTAGAGATTGCCATTGTGGGATGCTACTGTCTAGCTGCTCCTCAGGCTGTAAATGTGGAAGTTCATGTCTGAACAAACCATTCCAGCACCGGCCTGTGAAGAAGATGAAACTGGTGAAGACTGAGAAATGTGGTTCTGGAATCGTGGCGGATGAAGATATTAAGCAAGGAGAATTTGTGATAGAATACGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAATATGAAACACCGTGGAGAAACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTTATTGACGCCACGTACAAGGGGAACAAATCAAGATATATAAACCATAGCTGTTGTCCCAATACTGAGATGCAAAAATGGATAATCGATGGTGAAACAAGAATAGGCATATTTGCAACTTGCGACATAAAAAAGGGCGATCACCTCACCTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCATTGCGGTGCTGTTGGTTGTCGTGAAAAACTTGGTGTACGACCTACCAAACCAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCATGCCAGGTGGCTGTGTCCTCTCCCAAAGTGAAAACAATGCTCTCTGCAAAAGATGTTAGTGTTGGTTTGCTTTTAACATTCTTCCAAATATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0012505 GO:0016278 GO:0016279 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0032259 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

303

Amino Acids

34.18

Weight (kDa)

8.86

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	126 - 232	7e-26	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004078)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44150 AT3G59960 AT3G59960 AT3G59960 AT3G59960
fragaria_vesca	FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g00050 FvH4_1g30000 FvH4_1g30000
malus_domestica	MD15G1141800.v1.1
prunus_persica	Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1 Prupe.7G271600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084271
rosa_laevigata	RLG00000015605
rosa_multiflora	Rmu_co8457195.1_g000001 Rmu_sc0003129.1_g000015
rosa_rugosa	Rorug01G0452300
rosa_samantha	Rh2AG000700 Rh2BG000600 Rh2CG000500 Rh2DG000700
rosa_wichuraiana	Rw2G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AciI	CCGC	2 cut(s)	392, 732
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	2 cut(s)	551, 765
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	52, 92, 185, 704, 805
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	223, 819
AluBI	AGCT	2 cut(s)	279, 585
AluI	AGCT	2 cut(s)	279, 585
Alw26I	GTCTC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	210, 279, 797
ApoI	RAATTY	1 cut(s)	416
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	30, 147
AsuHPI	GGTGA	5 cut(s)	213, 370, 638, 668, 673
AxyI	CCTNAGG	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	197, 266, 784
BccI	CCATC	3 cut(s)	185, 223, 617
BciT130I	CCWGG	2 cut(s)	225, 821
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	3 cut(s)	234, 276, 809
BisI	GCNGC	3 cut(s)	211, 280, 798
BlsI	GCNGC	3 cut(s)	212, 281, 799
Bme1390I	CCNGG	2 cut(s)	225, 821
BmrFI	CCNGG	2 cut(s)	225, 821
BmsI	GCATC	2 cut(s)	255, 594
BpiI	GAAGAC	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	224, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	360
Bse21I	CCTNAGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	225, 821
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	2 cut(s)	224, 490
BseGI	GGATG	2 cut(s)	270, 400
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	4 cut(s)	15, 300, 357, 591
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	197, 266, 784
BsgI	GTGCAG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	576
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	576
BsnI	GGCC	1 cut(s)	337
Bso31I	GGTCTC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	673, 715
BspACI	CCGC	2 cut(s)	392, 732
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	4 cut(s)	16, 299, 358, 592
BspDI	ATCGAT	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	224, 490
BssMI	GATC	2 cut(s)	673, 715
BssNI	GRCGYC	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	225, 821
Bst4CI	ACNGT	2 cut(s)	273, 491
BstACI	GRCGYC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	6, 817
BstDEI	CTNAG	5 cut(s)	24, 162, 286, 366, 600
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	270, 400
BstHHI	GCGC	2 cut(s)	30, 147
BstKTI	GATC	2 cut(s)	676, 718
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	673, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
BstNI	CCWGG	2 cut(s)	225, 821
BstNSI	RCATGY	2 cut(s)	462, 819
BstSCI	CCNGG	2 cut(s)	223, 819
BstV1I	GCAGC	3 cut(s)	197, 266, 784
BstV2I	GAAGAC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	337
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	270, 400
Cac8I	GCNNGC	2 cut(s)	6, 817
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	2 cut(s)	30, 147
Cfr10I	RCCGGY	1 cut(s)	333
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	550, 764
CviAII	CATG	5 cut(s)	124, 207, 309, 459, 816
CviJI	RGCY	6 cut(s)	279, 291, 337, 472, 585, 827
CviKI_1	RGCY	6 cut(s)	279, 291, 337, 472, 585, 827
CviQI	GTAC	2 cut(s)	550, 764
DdeI	CTNAG	5 cut(s)	24, 162, 286, 366, 600
DpnI	GATC	2 cut(s)	675, 717
DpnII	GATC	2 cut(s)	673, 715
EciI	GGCGGA	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	223, 819
FaeI	CATG	5 cut(s)	127, 210, 312, 462, 819
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	5 cut(s)	123, 206, 308, 458, 815
Fnu4HI	GCNGC	3 cut(s)	211, 280, 798
FokI	GGATG	2 cut(s)	277, 407
Fsp4HI	GCNGC	3 cut(s)	211, 280, 798
FspBI	CTAG	3 cut(s)	234, 276, 809
GlaI	GCGC	2 cut(s)	29, 146
GluI	GCNGC	3 cut(s)	211, 280, 798
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	551
HhaI	GCGC	2 cut(s)	30, 147
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	5 cut(s)	127, 210, 312, 462, 819
Hin6I	GCGC	2 cut(s)	28, 145
HinP1I	GCGC	2 cut(s)	28, 145
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	5 cut(s)	213, 370, 638, 668, 673
Hpy166II	GTNNAC	1 cut(s)	764
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	6 cut(s)	98, 381, 527, 567, 719, 749
Hpy8I	GTNNAC	1 cut(s)	764
HpyCH4III	ACNGT	2 cut(s)	273, 491
HpyCH4IV	ACGT	2 cut(s)	432, 548
HpyCH4V	TGCA	4 cut(s)	607, 650, 713, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
HpyF3I	CTNAG	5 cut(s)	24, 162, 286, 366, 600
HpySE526I	ACGT	2 cut(s)	432, 548
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	127, 210, 312, 462, 819
HspAI	GCGC	2 cut(s)	28, 145
Kzo9I	GATC	2 cut(s)	673, 715
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	197, 266, 784
LweI	GCATC	2 cut(s)	255, 594
MaeI	CTAG	3 cut(s)	234, 276, 809
MaeII	ACGT	2 cut(s)	432, 548
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	2 cut(s)	675, 717
MboI	GATC	2 cut(s)	673, 715
MboII	GAAGA	7 cut(s)	25, 197, 355, 358, 373, 410, 889
MluCI	AATT	2 cut(s)	416, 704
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	5 cut(s)	159, 295, 457, 689, 844
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	4 cut(s)	171, 405, 890, 910
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	225, 821
MvaI	CCWGG	2 cut(s)	225, 821
MwoI	GCNNNNNNNGC	3 cut(s)	25, 210, 288
NdeII	GATC	2 cut(s)	673, 715
NlaIII	CATG	5 cut(s)	127, 210, 312, 462, 819
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	2 cut(s)	462, 819
PaeI	GCATGC	1 cut(s)	819
PciI	ACATGT	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	3 cut(s)	212, 281, 799
Ppu21I	YACGTR	1 cut(s)	549
PscI	ACATGT	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	223, 819
PspGI	CCWGG	2 cut(s)	223, 819
PstNI	CAGNNNCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	551, 765
RsaNI	GTAC	2 cut(s)	550, 764
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	4 cut(s)	171, 405, 890, 910
SatI	GCNGC	3 cut(s)	211, 280, 798
Sau3AI	GATC	2 cut(s)	673, 715
ScrFI	CCNGG	2 cut(s)	225, 821
SetI	ASST	8 cut(s)	281, 435, 551, 587, 681, 686, 772, 825
SfaNI	GCATC	2 cut(s)	255, 594
SmiMI	CAYNNNNRTG	1 cut(s)	732
SpeI	ACTAGT	1 cut(s)	808
SphI	GCATGC	1 cut(s)	819
Sse9I	AATT	2 cut(s)	416, 704
SsiI	CCGC	2 cut(s)	392, 732
SspI	AATATT	2 cut(s)	198, 906
SspMI	CTAG	3 cut(s)	234, 276, 809
StyD4I	CCNGG	2 cut(s)	223, 819
TaaI	ACNGT	2 cut(s)	273, 491
TaiI	ACGT	2 cut(s)	435, 551
TaqI	TCGA	2 cut(s)	526, 621
TasI	AATT	2 cut(s)	416, 704
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	4 cut(s)	171, 405, 890, 910
Tru9I	TTAA	4 cut(s)	171, 405, 890, 910
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	3 cut(s)	210, 279, 797
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	6 cut(s)	26, 140, 297, 365, 411, 497
XapI	RAATTY	1 cut(s)	416
XceI	RCATGY	2 cut(s)	462, 819
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	3 cut(s)	234, 276, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.