AT3G60270

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009898
Physical Location & Seq
Reverse (-)
22277797 .. 22278837
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60270.1

Sequence Viewer

Length: 564 bp
ATGGGATCAACCGCCGCCACCGCTCTCCTCCTCCTCCTCCTCCTAGTGGCAGTCCCTGCCGTCTTTGCCGTGACTTTCCAGGTGGGAGATAATGATGGTTGGACCATTGGTGTCGAGTACACGAGTTGGGTTAGTGAAAAGACTTTCAGAGTCGGTGACACTCTAGAGTTCAAATATGGTCCTTCGCACTCGGTGGCCGTGGTGAATAAAGCCGACTATGATGGCTGCGAAACTAGCAGACCGACGCAGAGTTTTTCTGACGGAGACACTAAGATCGATCTTACAAAAGTAGGTGCTATACACTTCCTTTGCCTTACTCCTGGTCACTGCAGCCTTGGCATGAAACTCGCCGTACAAGTACTTGCTGCCGTTTCATTAGAGCCTCCACCGTCTCCATCAGCTCCATCGCCGTCTCCATCAGCTCCATCACCGTCTCCATCAGCTCCATCGCCGTCTCCATCGCCGGGAAACGCAGAAAACTTGAAAAATGCGGCGTCTAAGGGAATCATGAGCTATGGAAAGATTGTGGTGACGATGGTGTTGATGTACGGTGTGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

187

Amino Acids

19.38

Weight (kDa)

5.5

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 6e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 4 cut(s) 12, 15, 21, 491
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 494
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 4 cut(s) 119, 354, 360, 548
AfiI CCNNNNNNNGG 2 cut(s) 46, 464
AgsI TTSAA 2 cut(s) 172, 484
AjnI CCWGG 2 cut(s) 78, 319
AluBI AGCT 4 cut(s) 401, 422, 443, 513
AluI AGCT 4 cut(s) 401, 422, 443, 513
Alw26I GTCTC 5 cut(s) 258, 396, 417, 438, 459
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 225, 330, 365
AspS9I GGNCC 2 cut(s) 102, 179
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 4 cut(s) 167, 214, 420, 541
AvaII GGWCC 2 cut(s) 102, 179
BauI CACGAG 1 cut(s) 121
BbvI GCAGC 3 cut(s) 212, 342, 352
BceAI ACGGC 7 cut(s) 44, 53, 182, 335, 353, 394, 436
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 2 cut(s) 80, 321
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 5 cut(s) 258, 396, 417, 438, 459
BfaI CTAG 3 cut(s) 44, 164, 234
BfmI CTRYAG 1 cut(s) 328
BisI GCNGC 5 cut(s) 15, 226, 331, 366, 492
BlsI GCNGC 5 cut(s) 16, 227, 332, 367, 493
BmcAI AGTACT 1 cut(s) 360
Bme1390I CCNGG 3 cut(s) 80, 321, 465
Bme18I GGWCC 2 cut(s) 102, 179
BmgT120I GGNCC 2 cut(s) 102, 179
BmrFI CCNGG 3 cut(s) 80, 321, 465
BpuMI CCSGG 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 198, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 464
BseBI CCWGG 2 cut(s) 80, 321
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 198, 334
BseLI CCNNNNNNNGG 2 cut(s) 46, 464
BseRI GAGGAG 5 cut(s) 17, 20, 23, 26, 29
BseXI GCAGC 3 cut(s) 212, 342, 352
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 276
BsiSI CCGG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 46, 464
BsmAI GTCTC 5 cut(s) 258, 396, 417, 438, 459
BsmBI CGTCTC 4 cut(s) 396, 417, 438, 459
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 5, 273, 277
BspACI CCGC 4 cut(s) 12, 15, 21, 491
BspANI GGCC 1 cut(s) 197
BspDI ATCGAT 1 cut(s) 276
BspHI TCATGA 1 cut(s) 507
BspMAI CTGCAG 1 cut(s) 332
BspPI GGATC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 198, 334
BssMI GATC 3 cut(s) 5, 273, 277
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 80, 321
Bst4CI ACNGT 3 cut(s) 390, 432, 551
BstACI GRCGYC 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 270, 498
BstDSI CCRYGG 1 cut(s) 198
BstKTI GATC 3 cut(s) 8, 276, 280
BstMAI GTCTC 5 cut(s) 258, 396, 417, 438, 459
BstMBI GATC 3 cut(s) 5, 273, 277
BstMWI GCNNNNNNNGC 5 cut(s) 20, 56, 65, 234, 336
BstNI CCWGG 2 cut(s) 80, 321
BstSCI CCNGG 3 cut(s) 78, 319, 463
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 3 cut(s) 212, 342, 352
Bsu15I ATCGAT 1 cut(s) 276
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 198
BtgZI GCGATG 3 cut(s) 390, 432, 444
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 325
CaiI CAGNNNCTG 1 cut(s) 56
CciI TCATGA 1 cut(s) 507
Cfr13I GGNCC 2 cut(s) 102, 179
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 2 cut(s) 253, 483
Csp6I GTAC 4 cut(s) 118, 353, 359, 547
CviAII CATG 2 cut(s) 340, 508
CviJI RGCY 9 cut(s) 197, 212, 225, 333, 382, 401, 422, 443, 513
CviKI_1 RGCY 9 cut(s) 197, 212, 225, 333, 382, 401, 422, 443, 513
CviQI GTAC 4 cut(s) 118, 353, 359, 547
DdeI CTNAG 2 cut(s) 270, 498
DpnI GATC 3 cut(s) 7, 275, 279
DpnII GATC 3 cut(s) 5, 273, 277
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 102, 179
EcoRII CCWGG 2 cut(s) 78, 319
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 4 cut(s) 396, 417, 438, 459
FaeI CATG 2 cut(s) 343, 511
FaiI YATR 6 cut(s) 177, 219, 299, 341, 509, 516
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 339, 507
Fnu4HI GCNGC 5 cut(s) 15, 226, 331, 366, 492
Fsp4HI GCNGC 5 cut(s) 15, 226, 331, 366, 492
FspBI CTAG 3 cut(s) 44, 164, 234
GluI GCNGC 5 cut(s) 15, 226, 331, 366, 492
HaeIII GGCC 1 cut(s) 197
HapII CCGG 1 cut(s) 464
HgaI GACGC 2 cut(s) 253, 483
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 2 cut(s) 343, 511
HinfI GANTC 2 cut(s) 150, 504
HpaII CCGG 1 cut(s) 464
HphI GGTGA 4 cut(s) 167, 214, 420, 541
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 149, 259
Hpy188III TCNNGA 2 cut(s) 164, 508
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 390, 432, 551
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 56, 65, 234, 336
HpyF3I CTNAG 2 cut(s) 270, 498
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 2 cut(s) 343, 511
Kzo9I GATC 3 cut(s) 5, 273, 277
LmnI GCTCC 3 cut(s) 406, 427, 448
LpnPI CCDG 6 cut(s) 65, 69, 92, 306, 333, 477
Lsp1109I GCAGC 3 cut(s) 212, 342, 352
MaeI CTAG 3 cut(s) 44, 164, 234
MaeIII GTNAC 4 cut(s) 70, 155, 323, 529
MalI GATC 3 cut(s) 7, 275, 279
MbiI CCGCTC 1 cut(s) 23
MboI GATC 3 cut(s) 5, 273, 277
MluCI AATT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 6 cut(s) 38, 41, 44, 47, 50, 393
MseI TTAA 1 cut(s) 558
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 3 cut(s) 80, 321, 465
MvaI CCWGG 2 cut(s) 80, 321
MwoI GCNNNNNNNGC 5 cut(s) 20, 56, 65, 234, 336
NciI CCSGG 1 cut(s) 465
NdeII GATC 3 cut(s) 5, 273, 277
NlaIII CATG 2 cut(s) 343, 511
NmuCI GTSAC 4 cut(s) 70, 155, 323, 529
PagI TCATGA 1 cut(s) 507
PfeI GAWTC 1 cut(s) 504
PkrI GCNGC 5 cut(s) 16, 227, 332, 367, 493
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 78, 319
PspGI CCWGG 2 cut(s) 78, 319
PspPI GGNCC 2 cut(s) 102, 179
PstI CTGCAG 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 56
RsaI GTAC 4 cut(s) 119, 354, 360, 548
RsaNI GTAC 4 cut(s) 118, 353, 359, 547
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 5 cut(s) 15, 226, 331, 366, 492
Sau3AI GATC 3 cut(s) 5, 273, 277
Sau96I GGNCC 2 cut(s) 102, 179
ScaI AGTACT 1 cut(s) 360
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 3 cut(s) 80, 321, 465
SetI ASST 6 cut(s) 84, 295, 403, 424, 445, 515
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 2 cut(s) 102, 179
Sse9I AATT 1 cut(s) 559
SsiI CCGC 4 cut(s) 12, 15, 21, 491
SspMI CTAG 3 cut(s) 44, 164, 234
StyD4I CCNGG 3 cut(s) 78, 319, 463
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 390, 432, 551
TaqI TCGA 2 cut(s) 114, 276
TaqII GACCGA 1 cut(s) 256
TasI AATT 1 cut(s) 559
TatI WGTACW 2 cut(s) 117, 358
TauI GCSGC 2 cut(s) 17, 494
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 4 cut(s) 70, 155, 323, 529
TseI GCWGC 3 cut(s) 225, 330, 365
Tsp45I GTSAC 4 cut(s) 70, 155, 323, 529
TspDTI ATGAA 2 cut(s) 356, 363
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 102, 179
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 3 cut(s) 44, 164, 234
ZrmI AGTACT 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.