Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002523.1

Orthogroup ID

OG0009898

Physical Location & Seq

Genomic Coordinates Reverse (-)

64570 .. 65246

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002523.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggccctggcaatagctttccttatactcatggtggcagctccagctgcagtttatggagctgagcacactgttggtgatacccagggatggaaccaaggtgtaaattatgacacttgggcttccggcaaaaccttcaccgtcggtgacactcttgtgttcaactatgacagtagccacaaagttgatgaggtaaacctagcagactacaacggttgcagttcaagtaattccattaaaacctatgaggatagtcccacaaaaatcaccctctccaaagctggtccaagctactacatatgccctatcccaggtcactgtgctaatggcatgaagcttttggtcaatgttgtggcggctggcaccccaagtggcaccccgcctactactacccccgccacgccagctccacccaccaccacaactcctgccaataatgactcgccacctccgccaccgccaccgcctaagatatcaccagcgagtagtcttcacatgaatttggttggggttccacttgtcttggcaaccttgatggcagttatgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

183

Amino Acids

18.87

Weight (kDa)

5.33

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60270 AT3G60280
fragaria_vesca	FvH4_7g10340 FvH4_7g10340 FvH4_7g10340 FvH4_7g10340
malus_domestica	MD07G1109600.v1.1
prunus_persica	Prupe.2G133000_v2.0.a1 Prupe.2G133000_v2.0.a1 Prupe.2G133000_v2.0.a1
pyrus_communis	pycom07g09410
rosa_chinensis	RchiOBHm_Chr1g0348051
rosa_laevigata	RLG00000028695
rosa_multiflora	Rmu_sc0002523.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307300
rosa_rugosa	Rorug01G0191300
rosa_samantha	Rh1AG209500 Rh1BG175200 Rh1CG193900 Rh1DG204800
rosa_wichuraiana	Rw1G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	362, 374
AciI	CCGC	6 cut(s)	356, 380, 396, 452, 458, 464
AcsI	RAATTY	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	90, 311
AgsI	TTSAA	2 cut(s)	163, 225
AjnI	CCWGG	3 cut(s)	6, 84, 310
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	8 cut(s)	17, 41, 47, 62, 281, 291, 337, 407
AluI	AGCT	8 cut(s)	17, 41, 47, 62, 281, 291, 337, 407
Alw21I	GWGCWC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	38, 47
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	4, 284
AsuHPI	GGTGA	5 cut(s)	89, 130, 158, 259, 468
AvaII	GGWCC	1 cut(s)	284
BanI	GGYRCC	2 cut(s)	362, 374
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	34, 50
BccI	CCATC	2 cut(s)	84, 529
BciT130I	CCWGG	3 cut(s)	8, 86, 312
BfaI	CTAG	2 cut(s)	200, 550
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	39, 48, 357
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	3 cut(s)	40, 49, 358
Bme1390I	CCNGG	3 cut(s)	8, 86, 312
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	4, 284
BmiI	GGNNCC	4 cut(s)	95, 364, 376, 513
BmrFI	CCNGG	3 cut(s)	8, 86, 312
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	27
Bpu1102I	GCTNAGC	1 cut(s)	63
BsaJI	CCNNGG	5 cut(s)	6, 84, 85, 97, 310
BsaXI	ACNNNNNCTCC	4 cut(s)	391, 409, 421, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 311
BseBI	CCWGG	3 cut(s)	8, 86, 312
BseDI	CCNNGG	5 cut(s)	6, 84, 85, 97, 310
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	90, 311
BseMII	CTCAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	34, 50
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	362, 374
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	90, 311
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	6 cut(s)	356, 380, 396, 452, 458, 464
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	95, 364, 376, 513
BspMAI	CTGCAG	1 cut(s)	52
BspT107I	GGYRCC	2 cut(s)	362, 374
BssECI	CCNNGG	5 cut(s)	6, 84, 85, 97, 310
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	3 cut(s)	8, 86, 312
Bst4CI	ACNGT	5 cut(s)	73, 142, 173, 215, 320
BstC8I	GCNNGC	2 cut(s)	361, 405
BstDEI	CTNAG	2 cut(s)	63, 468
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 47, 404, 451
BstNI	CCWGG	3 cut(s)	8, 86, 312
BstSCI	CCNGG	3 cut(s)	6, 84, 310
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	34, 50
BstV2I	GAAGAC	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	69, 316
Cac8I	GCNNGC	2 cut(s)	361, 405
Cfr13I	GGNCC	2 cut(s)	4, 284
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	3 cut(s)	31, 331, 496
DdeI	CTNAG	2 cut(s)	63, 468
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoRII	CCWGG	3 cut(s)	6, 84, 310
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	34, 334, 499
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	3 cut(s)	30, 330, 495
FauI	CCCGC	2 cut(s)	387, 403
FauNDI	CATATG	1 cut(s)	299
Fnu4HI	GCNGC	3 cut(s)	39, 48, 357
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	39, 48, 357
FspBI	CTAG	2 cut(s)	200, 550
GluI	GCNGC	3 cut(s)	39, 48, 357
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	34, 334, 499
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	5 cut(s)	89, 130, 158, 259, 468
Hpy166II	GTNNAC	1 cut(s)	196
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	5 cut(s)	73, 142, 173, 215, 320
HpyCH4V	TGCA	2 cut(s)	50, 219
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 47, 404, 451
HpyF3I	CTNAG	2 cut(s)	63, 468
Hsp92II	CATG	3 cut(s)	34, 334, 499
LmnI	GCTCC	3 cut(s)	46, 59, 412
Lsp1109I	GCAGC	2 cut(s)	34, 50
MaeI	CTAG	2 cut(s)	200, 550
MaeIII	GTNAC	2 cut(s)	146, 314
MboII	GAAGA	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	106, 229, 499
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	4 cut(s)	184, 241, 281, 459
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	3 cut(s)	8, 86, 312
MvaI	CCWGG	3 cut(s)	8, 86, 312
MwoI	GCNNNNNNNGC	4 cut(s)	44, 47, 404, 451
NdeI	CATATG	1 cut(s)	299
NlaIII	CATG	3 cut(s)	34, 334, 499
NlaIV	GGNNCC	4 cut(s)	95, 364, 376, 513
NmuCI	GTSAC	2 cut(s)	146, 314
OliI	CACNNNNGTG	1 cut(s)	155
PasI	CCCWGGG	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	40, 49, 358
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp6I	CCWGG	3 cut(s)	6, 84, 310
PspGI	CCWGG	3 cut(s)	6, 84, 310
PspN4I	GGNNCC	4 cut(s)	95, 364, 376, 513
PspPI	GGNCC	2 cut(s)	4, 284
PstI	CTGCAG	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	39, 48, 357
Sau96I	GGNCC	2 cut(s)	4, 284
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	3 cut(s)	8, 86, 312
SduI	GDGCHC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	106, 229, 499
SsiI	CCGC	6 cut(s)	356, 380, 396, 452, 458, 464
SspMI	CTAG	2 cut(s)	200, 550
StyD4I	CCNGG	3 cut(s)	6, 84, 310
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	5 cut(s)	73, 142, 173, 215, 320
TasI	AATT	3 cut(s)	106, 229, 499
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	2 cut(s)	76, 323
TseFI	GTSAC	2 cut(s)	146, 314
TseI	GCWGC	2 cut(s)	38, 47
Tsp45I	GTSAC	2 cut(s)	146, 314
TspDTI	ATGAA	2 cut(s)	347, 512
TspRI	CASTG	2 cut(s)	76, 323
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	1 cut(s)	499
XspI	CTAG	2 cut(s)	200, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.