Rh1DG204800

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009898
Physical Location & Seq
Forward (+)
40069954 .. 40071441
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG204800.1

Sequence Viewer

Length: 540 bp
ATGGCCCTGGCAATAGCTTTCCTTATACTCATGGTGGCAGCTCCAGCTGCAGTTTATGGAGCTGAGCACACTGTTGGTGATACCCAGGGATGGAACCAAGGTGTAAATTATGACACTTGGGCTTCCGGCAATACCTTTACCGTCGGTGACACTCTTGTGTTCAACTATGACAGTAGCCACAAAGTTGATGAGGTAAACCTAGCAGACTACAACGGTTGCAGTTCAAGTAATTCCATCAAAACCTATGAGGATAGTCCCACAAATATCACCCTCTCCAAAGCTGGTCCAAGCTACTACATATGCCCTATCTCAGGTCACTGTGCTAGTGGCATGAAGCTTTTGGTCAATGTTGTGGCGGCTGGCACCCCGCCTACTACTACCCCCGCCACGCCACCTCCACCCACCACCACAACTCCTGCCAATAATGACTCGCCACCTCCGCCACCGCCACCGCCTAAGATATCACCAGCGAGTAGTCTTCACATGAATTTGGTTGGGGTTCCACTTGTGTTGGCAACCTTGATGGCAGTTATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

179

Amino Acids

18.49

Weight (kDa)

4.79

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 111 1.7e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 6 cut(s) 356, 368, 384, 440, 446, 452
AcsI RAATTY 1 cut(s) 487
AfiI CCNNNNNNNGG 2 cut(s) 90, 311
AgsI TTSAA 2 cut(s) 163, 225
AjnI CCWGG 2 cut(s) 6, 84
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 7 cut(s) 17, 41, 47, 62, 281, 291, 337
AluI AGCT 7 cut(s) 17, 41, 47, 62, 281, 291, 337
Alw21I GWGCWC 1 cut(s) 69
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 38, 47
ApoI RAATTY 1 cut(s) 487
AspS9I GGNCC 2 cut(s) 4, 284
AsuHPI GGTGA 4 cut(s) 89, 158, 259, 456
AvaII GGWCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 34, 50
BccI CCATC 3 cut(s) 84, 242, 517
BciT130I CCWGG 2 cut(s) 8, 86
BfaI CTAG 3 cut(s) 200, 324, 538
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 3 cut(s) 39, 48, 357
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 40, 49, 358
Bme1390I CCNGG 2 cut(s) 8, 86
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 4, 284
BmiI GGNNCC 3 cut(s) 95, 364, 501
BmrFI CCNGG 2 cut(s) 8, 86
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 6, 84, 85, 97
BsaXI ACNNNNNCTCC 4 cut(s) 379, 397, 409, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 311
BseBI CCWGG 2 cut(s) 8, 86
BseDI CCNNGG 4 cut(s) 6, 84, 85, 97
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 90, 311
BseMII CTCAG 2 cut(s) 54, 324
BseXI GCAGC 2 cut(s) 34, 50
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 90, 311
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 6 cut(s) 356, 368, 384, 440, 446, 452
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 55, 323
BspLI GGNNCC 3 cut(s) 95, 364, 501
BspMAI CTGCAG 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 362
BssECI CCNNGG 4 cut(s) 6, 84, 85, 97
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 8, 86
Bst4CI ACNGT 5 cut(s) 73, 142, 173, 215, 320
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 63, 310, 456
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 44, 47, 439
BstNI CCWGG 2 cut(s) 8, 86
BstSCI CCNGG 2 cut(s) 6, 84
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 34, 50
BstV2I GAAGAC 1 cut(s) 470
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 69, 316
Cac8I GCNNGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 4, 284
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 3 cut(s) 31, 331, 484
DdeI CTNAG 3 cut(s) 63, 310, 456
EciI GGCGGA 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 97
Eco32I GATATC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 6, 84
EcoRV GATATC 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 34, 334, 487
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 30, 330, 483
FauI CCCGC 2 cut(s) 375, 391
FauNDI CATATG 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 39, 48, 357
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 39, 48, 357
FspBI CTAG 3 cut(s) 200, 324, 538
GluI GCNGC 3 cut(s) 39, 48, 357
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 34, 334, 487
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 126
HphI GGTGA 4 cut(s) 89, 158, 259, 456
Hpy166II GTNNAC 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 5 cut(s) 73, 142, 173, 215, 320
HpyCH4V TGCA 2 cut(s) 50, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 47, 439
HpyF3I CTNAG 3 cut(s) 63, 310, 456
Hsp92II CATG 3 cut(s) 34, 334, 487
LmnI GCTCC 2 cut(s) 46, 59
Lsp1109I GCAGC 2 cut(s) 34, 50
MaeI CTAG 3 cut(s) 200, 324, 538
MaeIII GTNAC 2 cut(s) 146, 314
MboII GAAGA 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 106, 229, 487
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 5 cut(s) 184, 241, 281, 405, 447
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 8, 86
MvaI CCWGG 2 cut(s) 8, 86
MwoI GCNNNNNNNGC 3 cut(s) 44, 47, 439
NdeI CATATG 1 cut(s) 299
NlaIII CATG 3 cut(s) 34, 334, 487
NlaIV GGNNCC 3 cut(s) 95, 364, 501
NmuCI GTSAC 2 cut(s) 146, 314
OliI CACNNNNGTG 1 cut(s) 155
PasI CCCWGGG 1 cut(s) 85
PkrI GCNGC 3 cut(s) 40, 49, 358
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 6, 84
PspGI CCWGG 2 cut(s) 6, 84
PspN4I GGNNCC 3 cut(s) 95, 364, 501
PspPI GGNCC 2 cut(s) 4, 284
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 3 cut(s) 39, 48, 357
Sau96I GGNCC 2 cut(s) 4, 284
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 8, 86
SduI GDGCHC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 3 cut(s) 106, 229, 487
SsiI CCGC 6 cut(s) 356, 368, 384, 440, 446, 452
SspMI CTAG 3 cut(s) 200, 324, 538
StyD4I CCNGG 2 cut(s) 6, 84
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 5 cut(s) 73, 142, 173, 215, 320
TasI AATT 3 cut(s) 106, 229, 487
TauI GCSGC 1 cut(s) 359
TscAI CASTG 2 cut(s) 76, 323
TseFI GTSAC 2 cut(s) 146, 314
TseI GCWGC 2 cut(s) 38, 47
Tsp45I GTSAC 2 cut(s) 146, 314
TspDTI ATGAA 2 cut(s) 347, 500
TspRI CASTG 2 cut(s) 76, 323
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 487
XspI CTAG 3 cut(s) 200, 324, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.