Rroxscaffold_4G00307300

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0009898
Physical Location & Seq
Reverse (-)
28479217 .. 28480213
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307300.1

Sequence Viewer

Length: 552 bp
ATGGCCCTGGCAATAGCTTTCCTTATACTCATGGTGGCAGCTCCAGCTGCAGTTTATGGAGCTGAGCACACTGTTGGTGATACCCAGGGATGGAACCAAGGTGTAAATTATGACACTTGGGCTTCCGGCAAAACCTTCACCGTCGGTGACACTCTTGTGTTCAACTATGACAGTAGCCACAAAGTTGATGAGGTAAACCTAGCAGACTACAACGGTTGCAGTTCAAGTAATTCCATCAAAACCTATGAAGATAGTCCCACAAATATCACCCTCTCCAAAGCTGGTCCAAGCTACTACATTTGCCCTATCCCAGGTCACTGTGCTAGTGGCATGAAGCTTTTGGTCAATGTTGTGGCGGCTGGCACCCCTAGTAGCACCCCGCCTACTACTAGCCCCGCCACGCCAGCTCCACCCACCAACACAACTCCTGCCAATAATGACTCGCCACCTCCGCCACCGCCACCGCCTAAGATATCACCAGCGAGTAGTCTTCACATGAATTTGGTTGGGGTTCCACTTGTGTTGGCAACCTTGGTGGCAGTTATAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

183

Amino Acids

18.81

Weight (kDa)

5.03

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 111 2.4e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AciI CCGC 6 cut(s) 356, 380, 396, 452, 458, 464
AcsI RAATTY 1 cut(s) 499
AfiI CCNNNNNNNGG 2 cut(s) 90, 311
AgsI TTSAA 2 cut(s) 163, 225
AjnI CCWGG 3 cut(s) 6, 84, 310
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 8 cut(s) 17, 41, 47, 62, 281, 291, 337, 407
AluI AGCT 8 cut(s) 17, 41, 47, 62, 281, 291, 337, 407
Alw21I GWGCWC 1 cut(s) 69
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 38, 47
ApoI RAATTY 1 cut(s) 499
AspS9I GGNCC 2 cut(s) 4, 284
AsuHPI GGTGA 5 cut(s) 89, 130, 158, 259, 468
AvaII GGWCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 34, 50
BccI CCATC 2 cut(s) 84, 242
BciT130I CCWGG 3 cut(s) 8, 86, 312
BfaI CTAG 5 cut(s) 200, 324, 369, 390, 550
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 3 cut(s) 39, 48, 357
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 40, 49, 358
Bme1390I CCNGG 3 cut(s) 8, 86, 312
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 4, 284
BmiI GGNNCC 3 cut(s) 95, 364, 513
BmrFI CCNGG 3 cut(s) 8, 86, 312
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 63
BsaJI CCNNGG 6 cut(s) 6, 84, 85, 97, 310, 531
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 311
BseBI CCWGG 3 cut(s) 8, 86, 312
BseDI CCNNGG 6 cut(s) 6, 84, 85, 97, 310, 531
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 90, 311
BseMII CTCAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 34, 50
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 2 cut(s) 90, 311
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 6 cut(s) 356, 380, 396, 452, 458, 464
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 95, 364, 513
BspMAI CTGCAG 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 362
BssECI CCNNGG 6 cut(s) 6, 84, 85, 97, 310, 531
BssT1I CCWWGG 2 cut(s) 97, 531
Bst2UI CCWGG 3 cut(s) 8, 86, 312
Bst4CI ACNGT 5 cut(s) 73, 142, 173, 215, 320
BstC8I GCNNGC 2 cut(s) 361, 405
BstDEI CTNAG 2 cut(s) 63, 468
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 95
BstMWI GCNNNNNNNGC 4 cut(s) 44, 47, 404, 451
BstNI CCWGG 3 cut(s) 8, 86, 312
BstSCI CCNGG 3 cut(s) 6, 84, 310
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 34, 50
BstV2I GAAGAC 1 cut(s) 482
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 2 cut(s) 69, 316
Cac8I GCNNGC 2 cut(s) 361, 405
Cfr13I GGNCC 2 cut(s) 4, 284
CspCI CAANNNNNGTGG 4 cut(s) 504, 516, 539, 551
CviAII CATG 3 cut(s) 31, 331, 496
DdeI CTNAG 2 cut(s) 63, 468
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 97, 531
Eco32I GATATC 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 3 cut(s) 6, 84, 310
EcoRV GATATC 1 cut(s) 474
EcoT14I CCWWGG 2 cut(s) 97, 531
ErhI CCWWGG 2 cut(s) 97, 531
FaeI CATG 3 cut(s) 34, 334, 499
FaiI YATR 9 cut(s) 26, 32, 57, 111, 168, 246, 332, 497, 545
FaqI GGGAC 1 cut(s) 240
FatI CATG 3 cut(s) 30, 330, 495
FauI CCCGC 2 cut(s) 387, 403
Fnu4HI GCNGC 3 cut(s) 39, 48, 357
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 39, 48, 357
FspBI CTAG 5 cut(s) 200, 324, 369, 390, 550
GluI GCNGC 3 cut(s) 39, 48, 357
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 126
Hin1II CATG 3 cut(s) 34, 334, 499
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 1 cut(s) 440
HpaII CCGG 1 cut(s) 126
HphI GGTGA 5 cut(s) 89, 130, 158, 259, 468
Hpy166II GTNNAC 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 5 cut(s) 73, 142, 173, 215, 320
HpyCH4V TGCA 2 cut(s) 50, 219
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 47, 404, 451
HpyF3I CTNAG 2 cut(s) 63, 468
Hsp92II CATG 3 cut(s) 34, 334, 499
LmnI GCTCC 3 cut(s) 46, 59, 412
Lsp1109I GCAGC 2 cut(s) 34, 50
MaeI CTAG 5 cut(s) 200, 324, 369, 390, 550
MaeIII GTNAC 2 cut(s) 146, 314
MboII GAAGA 2 cut(s) 260, 482
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 3 cut(s) 106, 229, 499
MlyI GAGTC 1 cut(s) 434
MnlI CCTC 3 cut(s) 184, 281, 459
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 3 cut(s) 8, 86, 312
MvaI CCWGG 3 cut(s) 8, 86, 312
MwoI GCNNNNNNNGC 4 cut(s) 44, 47, 404, 451
NlaIII CATG 3 cut(s) 34, 334, 499
NlaIV GGNNCC 3 cut(s) 95, 364, 513
NmuCI GTSAC 2 cut(s) 146, 314
OliI CACNNNNGTG 1 cut(s) 155
PasI CCCWGGG 1 cut(s) 85
PkrI GCNGC 3 cut(s) 40, 49, 358
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 6, 84, 310
PspGI CCWGG 3 cut(s) 6, 84, 310
PspN4I GGNNCC 3 cut(s) 95, 364, 513
PspPI GGNCC 2 cut(s) 4, 284
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 3 cut(s) 39, 48, 357
Sau96I GGNCC 2 cut(s) 4, 284
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 8, 86, 312
SduI GDGCHC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 3 cut(s) 106, 229, 499
SsiI CCGC 6 cut(s) 356, 380, 396, 452, 458, 464
SspMI CTAG 5 cut(s) 200, 324, 369, 390, 550
StyD4I CCNGG 3 cut(s) 6, 84, 310
StyI CCWWGG 2 cut(s) 97, 531
TaaI ACNGT 5 cut(s) 73, 142, 173, 215, 320
TasI AATT 3 cut(s) 106, 229, 499
TauI GCSGC 1 cut(s) 359
TscAI CASTG 2 cut(s) 76, 323
TseFI GTSAC 2 cut(s) 146, 314
TseI GCWGC 2 cut(s) 38, 47
Tsp45I GTSAC 2 cut(s) 146, 314
TspDTI ATGAA 3 cut(s) 261, 347, 512
TspRI CASTG 2 cut(s) 76, 323
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 499
XspI CTAG 5 cut(s) 200, 324, 369, 390, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.