Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009898

Physical Location & Seq

Genomic Coordinates Forward (+)

19104442 .. 19105771

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCATAGCAACAGCGCTAGTAATTTTGCTGCTTGCAGCCCCAGCAGTTTATGGAGTGCAGCACACTGTTGGTGACACAGCTGGCTGGGAATCAAATGTAGATTATGTCACTTGGGCTGCTAGTAAAACCTTCACTGTTGGTGACACTCTTTTGTTCACCTATGGTGCTTCCCACTCAGTGGATCAAGTAAATCAAGCAGGCTACAGTAGTTGCAGTTCAAGCAATGCCATCGGAACCCATAGTGATGGGAACACATCAATCCCCCTCTCACAAGCTGGTCCAGTCTACTTCATCTGCCCTACTCCAGGTCACTGTGCCAGTGGCATGAAGGTTACAGTCACTGTTGTGGCAGCTGGCAGCCCTCCTACCACTTCTCCCACAACTCCATCTCCACCCACCTCCACTCCGTCTCCACCCACCTCCACTCCGTCTCCACCCACCACTCCTGCCAGCAATAATGGTTCGTCGCCGCCACCCCCGCCACCTTCCGGAGCAGCAGCTCTTAGCATGAATATGCTTGGGGTTCCACTTGCGCTGGCAACCTTGGTTGCATTCATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

189

Amino Acids

18.67

Weight (kDa)

5.16

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60270 AT3G60280
fragaria_vesca	FvH4_7g10340 FvH4_7g10340 FvH4_7g10340 FvH4_7g10340
malus_domestica	MD07G1109600.v1.1
prunus_persica	Prupe.2G133000_v2.0.a1 Prupe.2G133000_v2.0.a1 Prupe.2G133000_v2.0.a1
pyrus_communis	pycom07g09410
rosa_chinensis	RchiOBHm_Chr1g0348051
rosa_laevigata	RLG00000028695
rosa_multiflora	Rmu_sc0002523.1_g000012
rosa_roxburghii	Rroxscaffold_4G00307300
rosa_rugosa	Rorug01G0191300
rosa_samantha	Rh1AG209500 Rh1BG175200 Rh1CG193900 Rh1DG204800
rosa_wichuraiana	Rw1G017470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	288
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	2 cut(s)	473, 482
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	181
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	181, 308, 491
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	307
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	4 cut(s)	83, 278, 356, 503
AluI	AGCT	4 cut(s)	83, 278, 356, 503
Alw26I	GTCTC	2 cut(s)	417, 438
AlwI	GGATC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	491
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	8 cut(s)	31, 38, 61, 119, 353, 360, 497, 500
AspLEI	GCGC	2 cut(s)	19, 538
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	86, 151, 155
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	8 cut(s)	18, 50, 73, 106, 365, 372, 509, 512
BccI	CCATC	3 cut(s)	239, 242, 397
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	417, 438
BfaI	CTAG	3 cut(s)	20, 123, 565
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	9 cut(s)	32, 39, 62, 120, 354, 361, 473, 498, 501
BlsI	GCNGC	9 cut(s)	33, 40, 63, 121, 355, 362, 474, 499, 502
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	238, 528
BmrFI	CCNGG	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	546
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 308, 491
Bse1I	ACTGG	2 cut(s)	284, 321
Bse3DI	GCAATG	1 cut(s)	232
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	546
BseLI	CCNNNNNNNGG	3 cut(s)	181, 308, 491
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	284, 321
BseXI	GCAGC	8 cut(s)	18, 50, 73, 106, 365, 372, 509, 512
BseYI	CCCAGC	2 cut(s)	43, 87
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	181, 308, 491
BsmAI	GTCTC	2 cut(s)	417, 438
BsmBI	CGTCTC	2 cut(s)	417, 438
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	473, 482
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	191
BspEI	TCCGGA	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	238, 528
BspPI	GGATC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	284, 321
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	6 cut(s)	70, 139, 209, 317, 340, 346
BstC8I	GCNNGC	6 cut(s)	36, 85, 202, 358, 454, 540
BstDEI	CTNAG	2 cut(s)	178, 506
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 538
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	417, 438
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 222, 481
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	8 cut(s)	18, 50, 73, 106, 365, 372, 509, 512
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	6 cut(s)	66, 135, 186, 313, 328, 342
Cac8I	GCNNGC	6 cut(s)	36, 85, 202, 358, 454, 540
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	2 cut(s)	19, 538
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	3 cut(s)	328, 511, 559
DdeI	CTNAG	2 cut(s)	178, 506
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	281
Eco47III	AGCGCT	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	2 cut(s)	417, 438
FaeI	CATG	3 cut(s)	331, 514, 562
FaiI	YATR	9 cut(s)	8, 54, 108, 165, 243, 329, 512, 518, 560
FatI	CATG	3 cut(s)	327, 510, 558
FauI	CCCGC	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	9 cut(s)	32, 39, 62, 120, 354, 361, 473, 498, 501
Fsp4HI	GCNGC	9 cut(s)	32, 39, 62, 120, 354, 361, 473, 498, 501
FspBI	CTAG	3 cut(s)	20, 123, 565
GlaI	GCGC	2 cut(s)	18, 537
GluI	GCNGC	9 cut(s)	32, 39, 62, 120, 354, 361, 473, 498, 501
GsaI	CCCAGC	2 cut(s)	47, 91
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	2 cut(s)	19, 538
Hin1II	CATG	3 cut(s)	331, 514, 562
Hin6I	GCGC	2 cut(s)	17, 536
HinP1I	GCGC	2 cut(s)	17, 536
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	3 cut(s)	86, 151, 155
Hpy166II	GTNNAC	2 cut(s)	159, 289
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	2 cut(s)	159, 289
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	3 cut(s)	142, 325, 498
HpyCH4III	ACNGT	6 cut(s)	70, 139, 209, 317, 340, 346
HpyCH4V	TGCA	4 cut(s)	38, 61, 216, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 222, 481
HpyF3I	CTNAG	2 cut(s)	178, 506
Hsp92II	CATG	3 cut(s)	331, 514, 562
HspAI	GCGC	2 cut(s)	17, 536
Kpn2I	TCCGGA	1 cut(s)	491
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	8 cut(s)	18, 50, 73, 106, 365, 372, 509, 512
MaeI	CTAG	3 cut(s)	20, 123, 565
MaeIII	GTNAC	6 cut(s)	74, 109, 143, 311, 334, 340
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	24
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	278, 375, 412, 433
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	3 cut(s)	246, 347, 515
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	83, 356
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	44, 222, 481
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	331, 514, 562
NlaIV	GGNNCC	2 cut(s)	238, 528
NmuCI	GTSAC	5 cut(s)	74, 109, 143, 311, 340
OliI	CACNNNNGTG	1 cut(s)	347
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	9 cut(s)	33, 40, 63, 121, 355, 362, 474, 499, 502
Psp6I	CCWGG	1 cut(s)	307
PspFI	CCCAGC	2 cut(s)	43, 87
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	238, 528
PspPI	GGNCC	1 cut(s)	281
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
PstNI	CAGNNNCTG	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	83, 356
RseI	CAYNNNNRTG	3 cut(s)	246, 347, 515
SatI	GCNGC	9 cut(s)	32, 39, 62, 120, 354, 361, 473, 498, 501
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	3 cut(s)	246, 347, 515
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	2 cut(s)	473, 482
SspMI	CTAG	3 cut(s)	20, 123, 565
StyD4I	CCNGG	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	6 cut(s)	70, 139, 209, 317, 340, 346
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	92
TscAI	CASTG	6 cut(s)	73, 142, 186, 320, 328, 349
TseFI	GTSAC	5 cut(s)	74, 109, 143, 311, 340
TseI	GCWGC	8 cut(s)	31, 38, 61, 119, 353, 360, 497, 500
Tsp45I	GTSAC	5 cut(s)	74, 109, 143, 311, 340
TspDTI	ATGAA	4 cut(s)	283, 344, 527, 547
TspGWI	ACGGA	2 cut(s)	399, 420
TspRI	CASTG	6 cut(s)	73, 142, 186, 320, 328, 349
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	281
XagI	CCTNNNNNAGG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	3 cut(s)	20, 123, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.